Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007289

Physical Location & Seq

Genomic Coordinates Forward (+)

30600295 .. 30602738

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGAAATGCTTGATCAGATGCTCTCATGGCAGCGCTCTCTTCAAAACCCTTAAACCCAAAACCCACATTCGCTTCTCTTCAACGCCACTTCGCTCCGGCCAAGCCCTCCGATCGCCTCGCAGAGCCTACGACGCTTTGCTGTTGGACGCCGGCGGCACTCTATTGCAGCTGGCCAAGCCCGTTGAAGACGTTTACGCCTCCATCGGATCCCAATACGCTGAAATCAAACAAGGTTTCAGGAGAGCCTTCTCTGCTCCTTGGCCTCAAAAGCTCCGATACCAGGGAGATGGGAGGCCGTTTTGGAAACTAGTTGTTTCCGAAGCCACGGGTTGTTCTGATCTTGATTATTTCGAACACGTCTATCAGTACTATGCTAAAGGTGATTCGTGGCGTTTACCGGATGGAGCTCATGAGACAATGCTACTTCTCAAGGATGCTGGAGTTAAGCTTGCTGTTGTGTCGAATTTTGACTCCCGCTTGAGGAAGTTGCTTGAGGAGCTGAATGTGTTGCATCTGTTTGATGCTGTTATCATATCTTCAGAGGTTGGTTCTGAAAAACCAGATGCAAACATATTTAAAGCTGCTTTAGATCAAACTCATGCTGATGCTGGCAAGGCAGTACATGTTGGTGATGATGAAAAAGCAGATAAGGTTGGGGCCAATGCTGTTGGAATTGATTGCTGGTTATGGGGCAAGGAGGTGAAGACATTCTTCGACATTCGAAATAGAATTCTGATTTCAGAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

251

Amino Acids

27.89

Weight (kDa)

8.26

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	44 - 225	4.3e-20	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	116 - 228	1.3e-15	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14310
fragaria_vesca	FvH4_4g31490 FvH4_4g31490 FvH4_4g31490 FvH4_4g31490 FvH4_4g31490
malus_domestica	MD05G1042500.v1.1 MD13G1073200.v1.1 MD16G1074400.v1.1
prunus_persica	Prupe.1G272900_v2.0.a1
pyrus_communis	pycom13g06560 pycom16g06440 pycom17g12220
rosa_chinensis	RchiOBHm_Chr4g0439981
rosa_laevigata	RLG00000006218
rosa_multiflora	Rmu_sc0014336.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380930
rosa_rugosa	Rorug04G0322800 Rorug04G0322900
rosa_samantha	Rh1BG026500 Rh4AG374000 Rh4BG386300 Rh4CG400800 Rh4DG380600
rosa_wichuraiana	Rw4G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	156, 478
AclWI	GGATC	2 cut(s)	204, 217
AcoI	YGGCCR	2 cut(s)	100, 174
AcsI	RAATTY	2 cut(s)	466, 732
AcuI	CTGAAG	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	2 cut(s)	371, 624
AfeI	AGCGCT	1 cut(s)	37
AfiI	CCNNNNNNNGG	2 cut(s)	283, 483
AflIII	ACRYGT	2 cut(s)	358, 625
AgsI	TTSAA	3 cut(s)	46, 84, 188
AhlI	ACTAGT	1 cut(s)	310
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	6 cut(s)	172, 274, 410, 451, 502, 584
AluI	AGCT	6 cut(s)	172, 274, 410, 451, 502, 584
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	2 cut(s)	204, 217
Aor51HI	AGCGCT	1 cut(s)	37
AoxI	GGCC	5 cut(s)	100, 174, 263, 296, 660
ApeKI	GCWGC	3 cut(s)	33, 169, 584
ApoI	RAATTY	2 cut(s)	466, 732
Asp700I	GAANNNNTTC	1 cut(s)	710
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	660
AsuHPI	GGTGA	3 cut(s)	395, 644, 715
AsuII	TTCGAA	2 cut(s)	354, 724
BalI	TGGCCA	1 cut(s)	176
BamHI	GGATCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	412
BbsI	GAAGAC	2 cut(s)	195, 713
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	3 cut(s)	45, 181, 571
BccI	CCATC	3 cut(s)	212, 284, 398
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	284
BclI	TGATCA	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	410
BcuI	ACTAGT	1 cut(s)	310
BfaI	CTAG	1 cut(s)	311
BfoI	RGCGCY	1 cut(s)	39
BisI	GCNGC	4 cut(s)	34, 157, 170, 585
BlsI	GCNGC	4 cut(s)	35, 158, 171, 586
BmcAI	AGTACT	1 cut(s)	371
Bme1390I	CCNGG	1 cut(s)	284
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	660
BmiI	GGNNCC	2 cut(s)	211, 661
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	6 cut(s)	11, 427, 514, 523, 556, 598
BpiI	GAAGAC	2 cut(s)	195, 713
BpmI	CTGGAG	1 cut(s)	462
Bpu14I	TTCGAA	2 cut(s)	354, 724
BpuEI	CTTGAG	3 cut(s)	416, 502, 515
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	260, 283, 327
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 483
Bse118I	RCCGGY	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	3 cut(s)	260, 283, 327
BseGI	GGATG	2 cut(s)	409, 442
BseLI	CCNNNNNNNGG	2 cut(s)	283, 483
BseRI	GAGGAG	1 cut(s)	512
BseXI	GCAGC	3 cut(s)	45, 181, 571
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	5 cut(s)	102, 176, 265, 298, 662
BsiEI	CGRYCG	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	412
BsiSI	CCGG	3 cut(s)	99, 153, 401
BslI	CCNNNNNNNGG	2 cut(s)	283, 483
BsmAI	GTCTC	1 cut(s)	410
BsnI	GGCC	5 cut(s)	102, 176, 265, 298, 662
Bsp119I	TTCGAA	2 cut(s)	354, 724
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	5 cut(s)	15, 113, 209, 340, 592
BspACI	CCGC	2 cut(s)	156, 478
BspANI	GGCC	5 cut(s)	102, 176, 265, 298, 662
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	211, 661
BspPI	GGATC	2 cut(s)	204, 217
BspT104I	TTCGAA	2 cut(s)	354, 724
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	260, 283, 327
BssMI	GATC	5 cut(s)	15, 113, 209, 340, 592
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	284
Bst6I	CTCTTC	2 cut(s)	47, 85
BstACI	GRCGYC	1 cut(s)	150
BstBI	TTCGAA	2 cut(s)	354, 724
BstC8I	GCNNGC	4 cut(s)	154, 174, 453, 613
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	2 cut(s)	409, 442
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	5 cut(s)	18, 116, 212, 343, 595
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	5 cut(s)	15, 113, 209, 340, 592
BstMCI	CGRYCG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	7 cut(s)	30, 134, 178, 254, 271, 499, 617
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	45, 181, 571
BstV2I	GAAGAC	2 cut(s)	195, 713
BstX2I	RGATCY	1 cut(s)	209
BstXI	CCANNNNNNTGG	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	5 cut(s)	102, 176, 265, 298, 662
BtgI	CCRYGG	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	409, 442
Cac8I	GCNNGC	4 cut(s)	154, 174, 453, 613
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	1 cut(s)	38
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	660
CseI	GACGC	2 cut(s)	143, 158
Csp6I	GTAC	2 cut(s)	370, 623
CviAII	CATG	4 cut(s)	29, 413, 602, 626
CviQI	GTAC	2 cut(s)	370, 623
DpnI	GATC	5 cut(s)	17, 115, 211, 342, 594
DpnII	GATC	5 cut(s)	15, 113, 209, 340, 592
DraI	TTTAAA	1 cut(s)	580
EaeI	YGGCCR	2 cut(s)	100, 174
Eam1104I	CTCTTC	2 cut(s)	47, 85
EarI	CTCTTC	2 cut(s)	47, 85
Ecl136II	GAGCTC	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	412
Eco47III	AGCGCT	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	525
EcoICRI	GAGCTC	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	732
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	4 cut(s)	32, 416, 605, 629
FaiI	YATR	9 cut(s)	30, 375, 414, 536, 575, 603, 627, 691, 751
FalI	AAGNNNNNCTT	2 cut(s)	698, 730
FatI	CATG	4 cut(s)	28, 412, 601, 625
FauI	CCCGC	1 cut(s)	485
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	4 cut(s)	34, 157, 170, 585
FokI	GGATG	2 cut(s)	416, 449
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	4 cut(s)	34, 157, 170, 585
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	4 cut(s)	34, 157, 170, 585
GsuI	CTGGAG	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	5 cut(s)	102, 176, 265, 298, 662
HapII	CCGG	3 cut(s)	99, 153, 401
HgaI	GACGC	2 cut(s)	143, 158
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	4 cut(s)	32, 416, 605, 629
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	3 cut(s)	386, 473, 746
HpaII	CCGG	3 cut(s)	99, 153, 401
HphI	GGTGA	3 cut(s)	395, 644, 715
Hpy166II	GTNNAC	2 cut(s)	196, 398
Hpy188III	TCNNGA	3 cut(s)	241, 344, 413
Hpy8I	GTNNAC	2 cut(s)	196, 398
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	259
HpyCH4IV	ACGT	2 cut(s)	192, 360
HpyCH4V	TGCA	3 cut(s)	169, 514, 569
HpyF10VI	GCNNNNNNNGC	7 cut(s)	30, 134, 178, 254, 271, 499, 617
HpySE526I	ACGT	2 cut(s)	192, 360
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	32, 416, 605, 629
HspAI	GCGC	1 cut(s)	36
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	5 cut(s)	15, 113, 209, 340, 592
LmnI	GCTCC	5 cut(s)	101, 262, 279, 407, 499
Lsp1109I	GCAGC	3 cut(s)	45, 181, 571
LweI	GCATC	6 cut(s)	11, 427, 514, 523, 556, 598
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	2 cut(s)	192, 360
MalI	GATC	5 cut(s)	17, 115, 211, 342, 594
MboI	GATC	5 cut(s)	15, 113, 209, 340, 592
MboII	GAAGA	6 cut(s)	34, 72, 200, 531, 706, 718
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	412
MlsI	TGGCCA	1 cut(s)	176
MluCI	AATT	3 cut(s)	466, 675, 732
MluNI	TGGCCA	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	2 cut(s)	126, 652
MnlI	CCTC	9 cut(s)	119, 129, 211, 276, 288, 477, 490, 538, 694
Mox20I	TGGCCA	1 cut(s)	176
MreI	CGCCGGCG	1 cut(s)	152
MroNI	GCCGGC	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	710
MscI	TGGCCA	1 cut(s)	176
MseI	TTAA	3 cut(s)	54, 447, 579
MslI	CAYNNNNRTG	2 cut(s)	606, 630
Msp20I	TGGCCA	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	3 cut(s)	99, 153, 401
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	7 cut(s)	30, 134, 178, 254, 271, 499, 617
NaeI	GCCGGC	1 cut(s)	154
NdeII	GATC	5 cut(s)	15, 113, 209, 340, 592
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	4 cut(s)	32, 416, 605, 629
NlaIV	GGNNCC	2 cut(s)	211, 661
NspI	RCATGY	1 cut(s)	629
NspV	TTCGAA	2 cut(s)	354, 724
PagI	TCATGA	1 cut(s)	412
PciI	ACATGT	1 cut(s)	625
PdiI	GCCGGC	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	710
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	4 cut(s)	35, 158, 171, 586
Ple19I	CGATCG	1 cut(s)	116
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PscI	ACATGT	1 cut(s)	625
Psp124BI	GAGCTC	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	211, 661
PspPI	GGNCC	1 cut(s)	660
PsuI	RGATCY	1 cut(s)	209
PvuI	CGATCG	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	2 cut(s)	371, 624
RsaNI	GTAC	2 cut(s)	370, 623
RseI	CAYNNNNRTG	2 cut(s)	606, 630
SacI	GAGCTC	1 cut(s)	412
SaqAI	TTAA	3 cut(s)	54, 447, 579
SatI	GCNGC	4 cut(s)	34, 157, 170, 585
Sau3AI	GATC	5 cut(s)	15, 113, 209, 340, 592
Sau96I	GGNCC	1 cut(s)	660
ScaI	AGTACT	1 cut(s)	371
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	6 cut(s)	11, 427, 514, 523, 556, 598
SfuI	TTCGAA	2 cut(s)	354, 724
SgrAI	CRCCGGYG	1 cut(s)	152
SmiMI	CAYNNNNRTG	2 cut(s)	606, 630
SmlI	CTYRAG	3 cut(s)	431, 481, 494
SmoI	CTYRAG	3 cut(s)	431, 481, 494
SpeI	ACTAGT	1 cut(s)	310
Sse9I	AATT	3 cut(s)	466, 675, 732
SsiI	CCGC	2 cut(s)	156, 478
SspMI	CTAG	1 cut(s)	311
SstI	GAGCTC	1 cut(s)	412
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	260
TaiI	ACGT	2 cut(s)	195, 363
TaqI	TCGA	4 cut(s)	354, 464, 717, 724
TasI	AATT	3 cut(s)	466, 675, 732
TatI	WGTACW	2 cut(s)	369, 622
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	3 cut(s)	54, 447, 579
Tru9I	TTAA	3 cut(s)	54, 447, 579
TseI	GCWGC	3 cut(s)	33, 169, 584
TspDTI	ATGAA	1 cut(s)	654
XapI	RAATTY	2 cut(s)	466, 732
XceI	RCATGY	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	710
XspI	CTAG	1 cut(s)	311
ZrmI	AGTACT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.