Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0007289

Physical Location & Seq

Genomic Coordinates Forward (+)

59147053 .. 59149276

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G031990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAAAAAATGGGAGCGAGACCCCTTCGCTTTGGTAAAATGGAGGGTTGCTTGGTCAAATGCTCTCACGGCGGCAGCGCTCTTTTGAAAACCCTTAAACCTCTTCATCCCAAAACCCACATTCGCTGCTTCTCTGCCCTCCGATCGCCTCGCAGAGCCTACGACGCATTGTTGTTGGACGCCGGAGGTACTCTCTTGCAGCTGGCCAACCCCGTCGAAGAGGTCTACGCCTCCATAGGAACCCAATACGGTGTGACTGCAACTCCAGCTGAAATCAAGCAGGGGTTCAGAAGAGCCTTCTCTGCTCCTTGGCCTCAAAAGCTCCGATACCAGGGAGATGGGAGGCCATTTTGGAAACTAGTTGTTTCAGAAGCCACTGGTTGTTCTGATCTTGATTATTTCGAACACGTCTATCAGTACTATGCTAGAGGTGATTCATGGCGTTTACCCGATGGAGCTTATGAAACAATGGTACTTCTCAAGGATGCTGGAGTTAAGCTTGCTGTTGTGTCGAATTTTGACTCCCGCTTAAGGAAACTACTCGAGGAGCTGAATGTGTTGCATCTGTTTGATGCTGTTATCATATCTTCAGAGGTTGGTTCTGAAAAACCAGATGCAAACATATTTAAAGCTGCGTTAGATCAAACTCATGTGGATGCTGGCAAGGCAGTACATGTCGGTGATGATGAAAATGCAGATAAGATTGGGGCCAATGCTGTTGGAATTGATTGCTGGTTATGGGGCAAGGAGGTGAAGACATTCTCCGACATTCGAAACAGAATTCTCATTTCAGAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

266

Amino Acids

29.47

Weight (kDa)

7.66

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	54 - 241	1.5e-21	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	133 - 244	1.1e-15	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14310
fragaria_vesca	FvH4_4g31490 FvH4_4g31490 FvH4_4g31490 FvH4_4g31490 FvH4_4g31490
malus_domestica	MD05G1042500.v1.1 MD13G1073200.v1.1 MD16G1074400.v1.1
prunus_persica	Prupe.1G272900_v2.0.a1
pyrus_communis	pycom13g06560 pycom16g06440 pycom17g12220
rosa_chinensis	RchiOBHm_Chr4g0439981
rosa_laevigata	RLG00000006218
rosa_multiflora	Rmu_sc0014336.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380930
rosa_rugosa	Rorug04G0322800 Rorug04G0322900
rosa_samantha	Rh1BG026500 Rh4AG374000 Rh4BG386300 Rh4CG400800 Rh4DG380600
rosa_wichuraiana	Rw4G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	2 cut(s)	72, 526
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	514, 780
AcuI	CTGAAG	1 cut(s)	573
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	4 cut(s)	190, 419, 474, 672
AfeI	AGCGCT	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	331, 531
AflII	CTTAAG	1 cut(s)	529
AflIII	ACRYGT	2 cut(s)	406, 673
AgsI	TTSAA	1 cut(s)	88
AhlI	ACTAGT	1 cut(s)	358
AjiI	CACGTC	1 cut(s)	409
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	7 cut(s)	202, 269, 322, 458, 499, 550, 632
AluI	AGCT	7 cut(s)	202, 269, 322, 458, 499, 550, 632
Alw26I	GTCTC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	542
Aor51HI	AGCGCT	1 cut(s)	79
AoxI	GGCC	4 cut(s)	204, 311, 344, 708
ApeKI	GCWGC	4 cut(s)	75, 126, 199, 632
ApoI	RAATTY	2 cut(s)	514, 780
Asp700I	GAANNNNTTC	1 cut(s)	758
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	708
AsuHPI	GGTGA	3 cut(s)	443, 692, 763
AsuII	TTCGAA	2 cut(s)	402, 772
AvaI	CYCGRG	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	761
BbvI	GCAGC	4 cut(s)	87, 113, 211, 619
BccI	CCATC	2 cut(s)	332, 446
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	13
BcuI	ACTAGT	1 cut(s)	358
BfaI	CTAG	2 cut(s)	359, 426
BfoI	RGCGCY	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	529
BisI	GCNGC	5 cut(s)	73, 76, 127, 200, 633
BlsI	GCNGC	5 cut(s)	74, 77, 128, 201, 634
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	332
BmeT110I	CYCGRG	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	708
BmiI	GGNNCC	2 cut(s)	241, 709
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	5 cut(s)	475, 562, 571, 604, 646
BpiI	GAAGAC	1 cut(s)	761
BplI	GAGNNNNNCTC	2 cut(s)	177, 209
BpmI	CTGGAG	2 cut(s)	249, 510
Bpu14I	TTCGAA	2 cut(s)	402, 772
BpuEI	CTTGAG	1 cut(s)	464
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	308, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 531
Bse1I	ACTGG	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	308, 331
BseGI	GGATG	3 cut(s)	106, 490, 661
BseLI	CCNNNNNNNGG	2 cut(s)	331, 531
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	4 cut(s)	87, 113, 211, 619
Bsh1285I	CGRYCG	1 cut(s)	146
BshFI	GGCC	4 cut(s)	206, 313, 346, 710
BsiEI	CGRYCG	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	331, 531
BsmAI	GTCTC	1 cut(s)	13
BsnI	GGCC	4 cut(s)	206, 313, 346, 710
Bso31I	GGTCTC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	542
Bsp119I	TTCGAA	2 cut(s)	402, 772
Bsp143I	GATC	3 cut(s)	143, 388, 640
BspACI	CCGC	2 cut(s)	72, 526
BspANI	GGCC	4 cut(s)	206, 313, 346, 710
BspLI	GGNNCC	2 cut(s)	241, 709
BspQI	GCTCTTC	1 cut(s)	286
BspT104I	TTCGAA	2 cut(s)	402, 772
BspTI	CTTAAG	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	308, 331
BssMI	GATC	3 cut(s)	143, 388, 640
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	3 cut(s)	108, 213, 286
BstACI	GRCGYC	1 cut(s)	180
BstAFI	CTTAAG	1 cut(s)	529
BstBI	TTCGAA	2 cut(s)	402, 772
BstC8I	GCNNGC	3 cut(s)	204, 501, 661
BstF5I	GGATG	3 cut(s)	106, 490, 661
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	3 cut(s)	146, 391, 643
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	3 cut(s)	143, 388, 640
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	6 cut(s)	69, 164, 266, 302, 319, 665
BstNI	CCWGG	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	677
BstSCI	CCNGG	1 cut(s)	330
BstV1I	GCAGC	4 cut(s)	87, 113, 211, 619
BstV2I	GAAGAC	1 cut(s)	761
BstXI	CCANNNNNNTGG	1 cut(s)	338
BsuRI	GGCC	4 cut(s)	206, 313, 346, 710
BtrI	CACGTC	1 cut(s)	409
BtsCI	GGATG	3 cut(s)	106, 490, 661
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	3 cut(s)	204, 501, 661
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	708
CseI	GACGC	2 cut(s)	173, 188
Csp6I	GTAC	4 cut(s)	189, 418, 473, 671
CviAII	CATG	3 cut(s)	438, 650, 674
CviQI	GTAC	4 cut(s)	189, 418, 473, 671
DpnI	GATC	3 cut(s)	145, 390, 642
DpnII	GATC	3 cut(s)	143, 388, 640
DraI	TTTAAA	1 cut(s)	628
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	3 cut(s)	108, 213, 286
EarI	CTCTTC	3 cut(s)	108, 213, 286
Eco130I	CCWWGG	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	13
Eco47III	AGCGCT	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	573
Eco88I	CYCGRG	1 cut(s)	542
EcoRI	GAATTC	1 cut(s)	780
EcoRII	CCWGG	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	3 cut(s)	441, 653, 677
FatI	CATG	3 cut(s)	437, 649, 673
FauI	CCCGC	1 cut(s)	533
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	5 cut(s)	73, 76, 127, 200, 633
FokI	GGATG	3 cut(s)	93, 497, 668
Fsp4HI	GCNGC	5 cut(s)	73, 76, 127, 200, 633
FspBI	CTAG	2 cut(s)	359, 426
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	5 cut(s)	73, 76, 127, 200, 633
GsuI	CTGGAG	2 cut(s)	249, 510
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	4 cut(s)	206, 313, 346, 710
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	2 cut(s)	173, 188
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	441, 653, 677
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	3 cut(s)	434, 521, 794
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	3 cut(s)	443, 692, 763
Hpy166II	GTNNAC	2 cut(s)	226, 446
Hpy188I	TCNGA	9 cut(s)	143, 290, 326, 370, 388, 592, 604, 766, 793
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	2 cut(s)	226, 446
Hpy99I	CGWCG	2 cut(s)	167, 218
HpyAV	CCTTC	2 cut(s)	35, 307
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	5 cut(s)	199, 260, 562, 617, 695
HpyF10VI	GCNNNNNNNGC	6 cut(s)	69, 164, 266, 302, 319, 665
HpySE526I	ACGT	1 cut(s)	408
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	3 cut(s)	441, 653, 677
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	143, 388, 640
LguI	GCTCTTC	1 cut(s)	286
LmnI	GCTCC	5 cut(s)	14, 310, 327, 455, 547
Lsp1109I	GCAGC	4 cut(s)	87, 113, 211, 619
LweI	GCATC	5 cut(s)	475, 562, 571, 604, 646
MaeI	CTAG	2 cut(s)	359, 426
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	145, 390, 642
MboI	GATC	3 cut(s)	143, 388, 640
MboII	GAAGA	5 cut(s)	95, 230, 303, 579, 766
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	3 cut(s)	514, 723, 780
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	3 cut(s)	156, 700, 789
Mox20I	TGGCCA	1 cut(s)	206
MroXI	GAANNNNTTC	1 cut(s)	758
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	4 cut(s)	96, 495, 530, 627
MslI	CAYNNNNRTG	2 cut(s)	654, 678
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	2 cut(s)	202, 269
MspCI	CTTAAG	1 cut(s)	529
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	6 cut(s)	69, 164, 266, 302, 319, 665
NdeII	GATC	3 cut(s)	143, 388, 640
NlaIII	CATG	3 cut(s)	441, 653, 677
NlaIV	GGNNCC	2 cut(s)	241, 709
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	677
NspV	TTCGAA	2 cut(s)	402, 772
PaeR7I	CTCGAG	1 cut(s)	542
PciI	ACATGT	1 cut(s)	673
PciSI	GCTCTTC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	758
PfeI	GAWTC	1 cut(s)	434
PkrI	GCNGC	5 cut(s)	74, 77, 128, 201, 634
Ple19I	CGATCG	1 cut(s)	146
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
PscI	ACATGT	1 cut(s)	673
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	2 cut(s)	241, 709
PspPI	GGNCC	1 cut(s)	708
PspXI	VCTCGAGB	1 cut(s)	542
PvuI	CGATCG	1 cut(s)	146
PvuII	CAGCTG	2 cut(s)	202, 269
RsaI	GTAC	4 cut(s)	190, 419, 474, 672
RsaNI	GTAC	4 cut(s)	189, 418, 473, 671
RseI	CAYNNNNRTG	2 cut(s)	654, 678
SapI	GCTCTTC	1 cut(s)	286
SaqAI	TTAA	4 cut(s)	96, 495, 530, 627
SatI	GCNGC	5 cut(s)	73, 76, 127, 200, 633
Sau3AI	GATC	3 cut(s)	143, 388, 640
Sau96I	GGNCC	1 cut(s)	708
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	1 cut(s)	332
SfaNI	GCATC	5 cut(s)	475, 562, 571, 604, 646
Sfr274I	CTCGAG	1 cut(s)	542
SfuI	TTCGAA	2 cut(s)	402, 772
SlaI	CTCGAG	1 cut(s)	542
SmiMI	CAYNNNNRTG	2 cut(s)	654, 678
SmlI	CTYRAG	3 cut(s)	479, 529, 542
SmoI	CTYRAG	3 cut(s)	479, 529, 542
SpeI	ACTAGT	1 cut(s)	358
Sse9I	AATT	3 cut(s)	514, 723, 780
SsiI	CCGC	2 cut(s)	72, 526
SspMI	CTAG	2 cut(s)	359, 426
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	5 cut(s)	216, 402, 512, 543, 772
TasI	AATT	3 cut(s)	514, 723, 780
TatI	WGTACW	2 cut(s)	417, 670
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	4 cut(s)	96, 495, 530, 627
Tru9I	TTAA	4 cut(s)	96, 495, 530, 627
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	4 cut(s)	75, 126, 199, 632
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	4 cut(s)	95, 426, 477, 702
TspRI	CASTG	1 cut(s)	382
Vha464I	CTTAAG	1 cut(s)	529
XapI	RAATTY	2 cut(s)	514, 780
XceI	RCATGY	1 cut(s)	677
XhoI	CTCGAG	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	758
XspI	CTAG	2 cut(s)	359, 426
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.