Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007289

Physical Location & Seq

Genomic Coordinates Forward (+)

59834867 .. 59840179

Gene Structure 5313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG380600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAAAAAATGGGAGCGAGACCCCTTCGCTTTGGTAAAATGGAGGGTTGCTTGGTCAAATGCTCTCACGGCGGCAGCGCTCTTTTGAAAACCCTTAAACCTCTTCATCCCAAAACCCACATTCGCTGCTTCTCTGCCCTCCGATCGCCTCGCAGAGCCTACGACGCATTGTTGTTGGACGCCGGAGGTACTCTCTTGCAGCTGGCCAACCCCGTCGAAGAGGTCTACGCCTCCATAGGAACCCAATACGGTGTGACTGCAACTCCAGCTGAAATCAAGCAGGGTTTCAGAAGAGCCTTCTCTGCTCCTTGGCCTCAAAAGCTCCGATACCAGGGAGATGGGAGGCCATTTTGGAAACTAGTTGTTTCAGAAGCCACTGGTTGTTCTGATCTTGATTATTTCGAACACGTCTATCAGTACTATGCTAGTGGTGATTCATGGCGTTTACCCGATGGAGCTTATGAAACAATGGTACTTCTCAAGGATGCTGGAGTTAAGCTTGCTGTTGTATCGAATTTTGACTCCCGCTTAAGGAAACTACTCGAGGAGCTGAATGTGTTGCATCTGTTTGATGCTGTTATCATATCTTCAGAGGTTGGTTCTGAAAAACCAGATGCAAACATATTTAAAGCTGCGTTAGGTATGTATTGCAGCACCATGTTCAGCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

223

Amino Acids

24.69

Weight (kDa)

8.74

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	54 - 213	1.8e-14	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	133 - 213	2e-08	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14310
fragaria_vesca	FvH4_4g31490 FvH4_4g31490 FvH4_4g31490 FvH4_4g31490 FvH4_4g31490
malus_domestica	MD05G1042500.v1.1 MD13G1073200.v1.1 MD16G1074400.v1.1
prunus_persica	Prupe.1G272900_v2.0.a1
pyrus_communis	pycom13g06560 pycom16g06440 pycom17g12220
rosa_chinensis	RchiOBHm_Chr4g0439981
rosa_laevigata	RLG00000006218
rosa_multiflora	Rmu_sc0014336.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380930
rosa_rugosa	Rorug04G0322800 Rorug04G0322900
rosa_samantha	Rh1BG026500 Rh4AG374000 Rh4BG386300 Rh4CG400800 Rh4DG380600
rosa_wichuraiana	Rw4G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	3 cut(s)	72, 526, 666
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	1 cut(s)	573
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	3 cut(s)	190, 419, 474
AfeI	AGCGCT	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	331, 531
AflII	CTTAAG	1 cut(s)	529
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	1 cut(s)	88
AhlI	ACTAGT	1 cut(s)	358
AjiI	CACGTC	1 cut(s)	409
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	7 cut(s)	202, 269, 322, 458, 499, 550, 632
AluI	AGCT	7 cut(s)	202, 269, 322, 458, 499, 550, 632
Alw26I	GTCTC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	542
Aor51HI	AGCGCT	1 cut(s)	79
AoxI	GGCC	3 cut(s)	204, 311, 344
ApeKI	GCWGC	5 cut(s)	75, 126, 199, 632, 651
ApoI	RAATTY	1 cut(s)	514
AspLEI	GCGC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	443
AsuII	TTCGAA	1 cut(s)	402
AvaI	CYCGRG	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	206
BbvI	GCAGC	5 cut(s)	87, 113, 211, 619, 663
BccI	CCATC	2 cut(s)	332, 446
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	13
BcuI	ACTAGT	1 cut(s)	358
BfaI	CTAG	2 cut(s)	359, 426
BfoI	RGCGCY	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	529
BisI	GCNGC	6 cut(s)	73, 76, 127, 200, 633, 652
BlsI	GCNGC	6 cut(s)	74, 77, 128, 201, 634, 653
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	332
BmeT110I	CYCGRG	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	409
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	4 cut(s)	475, 562, 571, 604
BplI	GAGNNNNNCTC	2 cut(s)	177, 209
BpmI	CTGGAG	2 cut(s)	249, 510
Bpu14I	TTCGAA	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	464
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	308, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 531
Bse1I	ACTGG	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	308, 331
BseGI	GGATG	2 cut(s)	106, 490
BseLI	CCNNNNNNNGG	2 cut(s)	331, 531
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	5 cut(s)	87, 113, 211, 619, 663
Bsh1285I	CGRYCG	1 cut(s)	146
BshFI	GGCC	3 cut(s)	206, 313, 346
BsiEI	CGRYCG	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	331, 531
BsmAI	GTCTC	1 cut(s)	13
BsnI	GGCC	3 cut(s)	206, 313, 346
Bso31I	GGTCTC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	542
Bsp119I	TTCGAA	1 cut(s)	402
Bsp143I	GATC	2 cut(s)	143, 388
BspACI	CCGC	3 cut(s)	72, 526, 666
BspANI	GGCC	3 cut(s)	206, 313, 346
BspLI	GGNNCC	1 cut(s)	241
BspQI	GCTCTTC	1 cut(s)	286
BspT104I	TTCGAA	1 cut(s)	402
BspTI	CTTAAG	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	308, 331
BssMI	GATC	2 cut(s)	143, 388
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	3 cut(s)	108, 213, 286
BstACI	GRCGYC	1 cut(s)	180
BstAFI	CTTAAG	1 cut(s)	529
BstBI	TTCGAA	1 cut(s)	402
BstC8I	GCNNGC	2 cut(s)	204, 501
BstF5I	GGATG	2 cut(s)	106, 490
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	2 cut(s)	146, 391
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	2 cut(s)	143, 388
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 164, 266, 302, 319
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstV1I	GCAGC	5 cut(s)	87, 113, 211, 619, 663
BstXI	CCANNNNNNTGG	1 cut(s)	338
BsuRI	GGCC	3 cut(s)	206, 313, 346
BtrI	CACGTC	1 cut(s)	409
BtsCI	GGATG	2 cut(s)	106, 490
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	2 cut(s)	204, 501
CfoI	GCGC	1 cut(s)	80
CseI	GACGC	2 cut(s)	173, 188
Csp6I	GTAC	3 cut(s)	189, 418, 473
CviAII	CATG	2 cut(s)	438, 658
CviQI	GTAC	3 cut(s)	189, 418, 473
DpnI	GATC	2 cut(s)	145, 390
DpnII	GATC	2 cut(s)	143, 388
DraI	TTTAAA	1 cut(s)	628
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	3 cut(s)	108, 213, 286
EarI	CTCTTC	3 cut(s)	108, 213, 286
Eco130I	CCWWGG	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	13
Eco47III	AGCGCT	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	573
Eco88I	CYCGRG	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	2 cut(s)	441, 661
FaiI	YATR	8 cut(s)	236, 423, 439, 462, 584, 623, 644, 659
FatI	CATG	2 cut(s)	437, 657
FauI	CCCGC	1 cut(s)	533
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	6 cut(s)	73, 76, 127, 200, 633, 652
FokI	GGATG	2 cut(s)	93, 497
Fsp4HI	GCNGC	6 cut(s)	73, 76, 127, 200, 633, 652
FspBI	CTAG	2 cut(s)	359, 426
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	6 cut(s)	73, 76, 127, 200, 633, 652
GsuI	CTGGAG	2 cut(s)	249, 510
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	3 cut(s)	206, 313, 346
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	2 cut(s)	173, 188
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	2 cut(s)	441, 661
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	2 cut(s)	434, 521
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	2 cut(s)	226, 446
Hpy188I	TCNGA	7 cut(s)	143, 290, 326, 370, 388, 592, 604
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	2 cut(s)	226, 446
Hpy99I	CGWCG	2 cut(s)	167, 218
HpyAV	CCTTC	2 cut(s)	35, 307
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	5 cut(s)	199, 260, 562, 617, 651
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 164, 266, 302, 319
HpySE526I	ACGT	1 cut(s)	408
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	441, 661
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	143, 388
LguI	GCTCTTC	1 cut(s)	286
LmnI	GCTCC	5 cut(s)	14, 310, 327, 455, 547
LpnPI	CCDG	9 cut(s)	188, 196, 266, 279, 317, 344, 363, 474, 624
Lsp1109I	GCAGC	5 cut(s)	87, 113, 211, 619, 663
LweI	GCATC	4 cut(s)	475, 562, 571, 604
MaeI	CTAG	2 cut(s)	359, 426
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	2 cut(s)	145, 390
MboI	GATC	2 cut(s)	143, 388
MboII	GAAGA	4 cut(s)	95, 230, 303, 579
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	1 cut(s)	514
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	156
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	4 cut(s)	96, 495, 530, 627
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	3 cut(s)	202, 269, 666
MspCI	CTTAAG	1 cut(s)	529
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	5 cut(s)	69, 164, 266, 302, 319
NdeII	GATC	2 cut(s)	143, 388
NlaIII	CATG	2 cut(s)	441, 661
NlaIV	GGNNCC	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	253
NspV	TTCGAA	1 cut(s)	402
PaeR7I	CTCGAG	1 cut(s)	542
PciSI	GCTCTTC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	434
PkrI	GCNGC	6 cut(s)	74, 77, 128, 201, 634, 653
Ple19I	CGATCG	1 cut(s)	146
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	241
PspXI	VCTCGAGB	1 cut(s)	542
PvuI	CGATCG	1 cut(s)	146
PvuII	CAGCTG	2 cut(s)	202, 269
RsaI	GTAC	3 cut(s)	190, 419, 474
RsaNI	GTAC	3 cut(s)	189, 418, 473
SapI	GCTCTTC	1 cut(s)	286
SaqAI	TTAA	4 cut(s)	96, 495, 530, 627
SatI	GCNGC	6 cut(s)	73, 76, 127, 200, 633, 652
Sau3AI	GATC	2 cut(s)	143, 388
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	1 cut(s)	332
SfaNI	GCATC	4 cut(s)	475, 562, 571, 604
Sfr274I	CTCGAG	1 cut(s)	542
SfuI	TTCGAA	1 cut(s)	402
SlaI	CTCGAG	1 cut(s)	542
SmlI	CTYRAG	3 cut(s)	479, 529, 542
SmoI	CTYRAG	3 cut(s)	479, 529, 542
SpeI	ACTAGT	1 cut(s)	358
Sse9I	AATT	1 cut(s)	514
SsiI	CCGC	3 cut(s)	72, 526, 666
SspMI	CTAG	2 cut(s)	359, 426
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	4 cut(s)	216, 402, 512, 543
TasI	AATT	1 cut(s)	514
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	4 cut(s)	96, 495, 530, 627
Tru9I	TTAA	4 cut(s)	96, 495, 530, 627
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	5 cut(s)	75, 126, 199, 632, 651
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	3 cut(s)	95, 426, 477
TspRI	CASTG	1 cut(s)	382
Vha464I	CTTAAG	1 cut(s)	529
XapI	RAATTY	1 cut(s)	514
XhoI	CTCGAG	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	2 cut(s)	359, 426
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.