Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007289

Physical Location & Seq

Genomic Coordinates Reverse (-)

9958937 .. 9959886

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g12220.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGAAGGTTGCTTGATGAGATGCTCTCACGGCAGCGCTCTCCTGAAAACCTTCAAACCTCTCGTTGCGTCTTGTCCGCAGAATGAGGCTCAGTGGGGAGCAATGGCTAACAGGAATCTGGGGAAGTTGGAGTCCATTAACGCACAACTTCGGCTTCTGGTTTCGACTGTAAAATTTGGTTTCGATCGGTTTGAGACATTCATCTTGATTTCGATTGAAGCAATCTGGGCATGCAAAGAACAAGGAACATATGGAAGAAGAGAAAGTAGAGAGACGGGAGAGACAGAATCAAATAAAAAGGGTAAGTCAGTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

106

Amino Acids

11.71

Weight (kDa)

9.05

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14310
fragaria_vesca	FvH4_4g31490 FvH4_4g31490 FvH4_4g31490 FvH4_4g31490 FvH4_4g31490
malus_domestica	MD05G1042500.v1.1 MD13G1073200.v1.1 MD16G1074400.v1.1
prunus_persica	Prupe.1G272900_v2.0.a1
pyrus_communis	pycom13g06560 pycom16g06440 pycom17g12220
rosa_chinensis	RchiOBHm_Chr4g0439981
rosa_laevigata	RLG00000006218
rosa_multiflora	Rmu_sc0014336.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380930
rosa_rugosa	Rorug04G0322800 Rorug04G0322900
rosa_samantha	Rh1BG026500 Rh4AG374000 Rh4BG386300 Rh4CG400800 Rh4DG380600
rosa_wichuraiana	Rw4G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	173
AfeI	AGCGCT	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	55, 218
Alw26I	GTCTC	3 cut(s)	188, 266, 275
Aor51HI	AGCGCT	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	45
BceAI	ACGGC	1 cut(s)	46
BcoDI	GTCTC	3 cut(s)	188, 266, 275
BfoI	RGCGCY	1 cut(s)	39
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
BmsI	GCATC	1 cut(s)	11
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
Bse3DI	GCAATG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	187
BsiEI	CGRYCG	1 cut(s)	187
BsmAI	GTCTC	3 cut(s)	188, 266, 275
BsmBI	CGTCTC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	108
BssMI	GATC	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	3 cut(s)	188, 266, 275
BstMBI	GATC	1 cut(s)	184
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 227
BstNSI	RCATGY	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	232
CfoI	GCGC	1 cut(s)	38
CseI	GACGC	1 cut(s)	57
CviAII	CATG	1 cut(s)	231
CviJI	RGCY	3 cut(s)	89, 107, 154
CviKI_1	RGCY	3 cut(s)	89, 107, 154
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Eco47III	AGCGCT	1 cut(s)	37
Esp3I	CGTCTC	1 cut(s)	266
FaeI	CATG	1 cut(s)	234
FaiI	YATR	3 cut(s)	232, 250, 252
FatI	CATG	1 cut(s)	230
FauNDI	CATATG	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	34
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	34
HaeII	RGCGCY	1 cut(s)	39
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	234
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HinfI	GANTC	3 cut(s)	115, 131, 287
Hpy188III	TCNNGA	2 cut(s)	43, 205
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 227
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	234
HspAI	GCGC	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	5 cut(s)	56, 97, 104, 143, 211
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	1 cut(s)	11
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	2 cut(s)	267, 270
MluCI	AATT	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	2 cut(s)	69, 79
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	30, 227
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	1 cut(s)	234
NspI	RCATGY	1 cut(s)	234
PaeI	GCATGC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	115, 287
PkrI	GCNGC	1 cut(s)	35
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PvuI	CGATCG	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	140
SetI	ASST	3 cut(s)	10, 53, 61
SfaNI	GCATC	1 cut(s)	11
SphI	GCATGC	1 cut(s)	234
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	3 cut(s)	164, 183, 212
TasI	AATT	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	115, 287
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	98
TseI	GCWGC	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.