Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007289

Physical Location & Seq

Genomic Coordinates Forward (+)

3516826 .. 3531761

Gene Structure 14936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG026500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAATGGAAAAAGTGGAGGTGACCCCTTCCACTTTGGTAACACTGTAATGGAGGGTTGCTTGATCAAATGCTCTCACGGCAGCGCTCTCTGGAAAACCCTTAAACCTCTTCATCCCAAAACACACATTCCCTTCTCTTCAACACCAATTCACTCCGGCGAAGCCTTCCGATCGCCTCCTGTAGCCTATGACACATTGTTGATGGACGCCAGAGGTACTCTCTTGCAGCTAGCCAACCTCGTCGAAGAGGGTAACAAGGGAATATTTACAAAAAAATATGAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

95

Amino Acids

10.38

Weight (kDa)

8.64

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14310
fragaria_vesca	FvH4_4g31490 FvH4_4g31490 FvH4_4g31490 FvH4_4g31490 FvH4_4g31490
malus_domestica	MD05G1042500.v1.1 MD13G1073200.v1.1 MD16G1074400.v1.1
prunus_persica	Prupe.1G272900_v2.0.a1
pyrus_communis	pycom13g06560 pycom16g06440 pycom17g12220
rosa_chinensis	RchiOBHm_Chr4g0439981
rosa_laevigata	RLG00000006218
rosa_multiflora	Rmu_sc0014336.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380930
rosa_rugosa	Rorug04G0322800 Rorug04G0322900
rosa_samantha	Rh1BG026500 Rh4AG374000 Rh4BG386300 Rh4CG400800 Rh4DG380600
rosa_wichuraiana	Rw4G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	217
AfeI	AGCGCT	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	141
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Aor51HI	AGCGCT	1 cut(s)	85
ApeKI	GCWGC	2 cut(s)	81, 226
AspLEI	GCGC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	32
AsuNHI	GCTAGC	1 cut(s)	229
BbvI	GCAGC	2 cut(s)	93, 238
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	63
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	2 cut(s)	82, 227
BlsI	GCNGC	2 cut(s)	83, 228
BmtI	GCTAGC	1 cut(s)	233
BplI	GAGNNNNNCTC	2 cut(s)	204, 236
BsaHI	GRCGYC	1 cut(s)	207
BseGI	GGATG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	93, 238
Bsh1285I	CGRYCG	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	63, 170
BspOI	GCTAGC	1 cut(s)	233
BssMI	GATC	2 cut(s)	63, 170
BssNI	GRCGYC	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	3 cut(s)	114, 142, 240
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	231
BstEII	GGTNACC	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	66, 173
BstMBI	GATC	2 cut(s)	63, 170
BstMCI	CGRYCG	1 cut(s)	173
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstPI	GGTNACC	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	93, 238
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	231
CfoI	GCGC	1 cut(s)	86
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	216
CviJI	RGCY	4 cut(s)	164, 185, 229, 233
CviKI_1	RGCY	4 cut(s)	164, 185, 229, 233
CviQI	GTAC	1 cut(s)	216
DpnI	GATC	2 cut(s)	65, 172
DpnII	GATC	2 cut(s)	63, 170
Eam1104I	CTCTTC	3 cut(s)	114, 142, 240
EarI	CTCTTC	3 cut(s)	114, 142, 240
Eco47III	AGCGCT	1 cut(s)	85
Eco91I	GGTNACC	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	20
FaiI	YATR	3 cut(s)	189, 279, 286
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	82, 227
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	2 cut(s)	82, 227
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	82, 227
HaeII	RGCGCY	1 cut(s)	87
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	207
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	3 cut(s)	37, 142, 175
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
Hsp92I	GRCGYC	1 cut(s)	207
HspAI	GCGC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	63, 170
LpnPI	CCDG	4 cut(s)	76, 169, 192, 223
Lsp1109I	GCAGC	2 cut(s)	93, 238
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	3 cut(s)	20, 38, 251
MalI	GATC	2 cut(s)	65, 172
MboI	GATC	2 cut(s)	63, 170
MboII	GAAGA	3 cut(s)	101, 129, 257
MluCI	AATT	1 cut(s)	147
MnlI	CCTC	7 cut(s)	11, 46, 117, 186, 206, 241, 248
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	78
NdeII	GATC	2 cut(s)	63, 170
NheI	GCTAGC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	83, 228
Ple19I	CGATCG	1 cut(s)	173
PspEI	GGTNACC	1 cut(s)	20
PvuI	CGATCG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	82, 227
Sau3AI	GATC	2 cut(s)	63, 170
SetI	ASST	5 cut(s)	22, 109, 217, 231, 240
SfcI	CTRYAG	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	147
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	1 cut(s)	243
TasI	AATT	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	81, 226
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	17, 101
TspRI	CASTG	1 cut(s)	49
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.