Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007289

Physical Location & Seq

Genomic Coordinates Forward (+)

4256473 .. 4258054

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAAGGTTGCTTGATGAGATGCTATCACGGCGGCGCCCTATTCAAAACCCTCAAGCCCCTCTCTTTAAACCTCCCCAGAAACTCCATTCGCTGCTCTTCCATGTCCGTCTACTCCGGCGGAGGAGGAGGATCGGCTCTTAGTCGCAAGGTCTACGACGCATTGCTGTTAGACGCCGGAGGCACTCTGTTGCAGTTGGCGAAGCCAGTCGAAGATGTCTACGCTTCCATCGGAACCAAATACGGTGTGACTGCAACTCCAGCTGAAATCAAGCAGGGATTCAGAAGAGCATTTTCTGCTCCTTGGCCTCAGAAGCTGCGTTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTTGTGTCCGAAGCCACTGGTTGTTCTAATCTTGATTATTTCGAACAAGTTTATGAGTACTATGCTAAAGGCGACGCATGGCGTCTTCCAGATGGAGCTTATGAAACAATGCTGCTTCTCAAAGAGGCTGGAGTTAAGCTGGCTGTTGTATCCAATTTCGATTCCCGCTTACGGAAGCTACTTGAGGACCTTAATGTTTTGCATCTGTTTGATTCCGTTATCATATCTTTAGAAGTTGGGTATGAGAAACCAGATGCAGGTATATTCGAAGCCGCTTTAGATCAAGTACGTGTGGACGCTGGCAAAGCGGTACATGTTGGCGACGACAAAATTGCAGATAAGGATGGGGCCAATGCCATTGGAATTGATTGCTGGTTATGGGGCCTAGATGTGAAGGCATTCTCCGACATTCAAAATCGCATTCTCATTTCAGAGTCTCAGCTTGCGAAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

270

Amino Acids

29.48

Weight (kDa)

5.73

Isoelectric Point (pI)

27.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14310
fragaria_vesca	FvH4_4g31490 FvH4_4g31490 FvH4_4g31490 FvH4_4g31490 FvH4_4g31490
malus_domestica	MD05G1042500.v1.1 MD13G1073200.v1.1 MD16G1074400.v1.1
prunus_persica	Prupe.1G272900_v2.0.a1
pyrus_communis	pycom13g06560 pycom16g06440 pycom17g12220
rosa_chinensis	RchiOBHm_Chr4g0439981
rosa_laevigata	RLG00000006218
rosa_multiflora	Rmu_sc0014336.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380930
rosa_rugosa	Rorug04G0322800 Rorug04G0322900
rosa_samantha	Rh1BG026500 Rh4AG374000 Rh4BG386300 Rh4CG400800 Rh4DG380600
rosa_wichuraiana	Rw4G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	35
AccI	GTMKAC	3 cut(s)	111, 153, 219
AciI	CCGC	5 cut(s)	33, 120, 520, 627, 662
AclWI	GGATC	1 cut(s)	139
AcyI	GRCGYC	3 cut(s)	36, 174, 436
AfaI	GTAC	3 cut(s)	413, 642, 666
AfiI	CCNNNNNNNGG	2 cut(s)	525, 611
AflIII	ACRYGT	2 cut(s)	643, 667
AgsI	TTSAA	2 cut(s)	46, 767
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	6 cut(s)	263, 316, 452, 493, 532, 796
AluI	AGCT	6 cut(s)	263, 316, 452, 493, 532, 796
Alw26I	GTCTC	1 cut(s)	795
AlwI	GGATC	1 cut(s)	139
AlwNI	CAGNNNCTG	1 cut(s)	316
AoxI	GGCC	4 cut(s)	305, 338, 702, 736
ApeKI	GCWGC	3 cut(s)	93, 316, 466
Asp700I	GAANNNNTTC	1 cut(s)	752
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	3 cut(s)	541, 702, 736
AsuII	TTCGAA	2 cut(s)	396, 621
AvaII	GGWCC	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	35
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BbsI	GAAGAC	1 cut(s)	431
BbvI	GCAGC	3 cut(s)	80, 303, 453
BccI	CCATC	4 cut(s)	236, 326, 440, 692
BceAI	ACGGC	1 cut(s)	46
BcgI	CGANNNNNNTGC	2 cut(s)	668, 702
BciT130I	CCWGG	1 cut(s)	326
BciVI	GTATCC	1 cut(s)	514
BcoDI	GTCTC	1 cut(s)	795
BfaI	CTAG	2 cut(s)	740, 808
BfoI	RGCGCY	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	602
BfuI	GTATCC	1 cut(s)	514
BisI	GCNGC	5 cut(s)	34, 94, 317, 467, 627
BlsI	GCNGC	5 cut(s)	35, 95, 318, 468, 628
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	541
BmgT120I	GGNCC	3 cut(s)	541, 702, 736
BmiI	GGNNCC	4 cut(s)	37, 235, 703, 737
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	3 cut(s)	11, 565, 598
BpiI	GAAGAC	1 cut(s)	431
BpmI	CTGGAG	2 cut(s)	243, 504
Bpu14I	TTCGAA	2 cut(s)	396, 621
BpuEI	CTTGAG	2 cut(s)	38, 557
BsaAI	YACGTR	1 cut(s)	644
BsaHI	GRCGYC	3 cut(s)	36, 174, 436
BsaJI	CCNNGG	2 cut(s)	302, 325
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 611
Bse1I	ACTGG	2 cut(s)	206, 376
Bse3DI	GCAATG	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	2 cut(s)	302, 325
BseGI	GGATG	1 cut(s)	703
BseLI	CCNNNNNNNGG	2 cut(s)	525, 611
BseMI	GCAATG	1 cut(s)	161
BseMII	CTCAG	2 cut(s)	323, 806
BseNI	ACTGG	2 cut(s)	206, 376
BseRI	GAGGAG	2 cut(s)	138, 141
BseXI	GCAGC	3 cut(s)	80, 303, 453
BshFI	GGCC	4 cut(s)	307, 340, 704, 738
BshNI	GGYRCC	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	117, 177
BslI	CCNNNNNNNGG	2 cut(s)	525, 611
BsmAI	GTCTC	1 cut(s)	795
BsmI	GAATGC	2 cut(s)	752, 774
BsnI	GGCC	4 cut(s)	307, 340, 704, 738
Bsp119I	TTCGAA	2 cut(s)	396, 621
Bsp143I	GATC	2 cut(s)	131, 634
BspACI	CCGC	5 cut(s)	33, 120, 520, 627, 662
BspANI	GGCC	4 cut(s)	307, 340, 704, 738
BspCNI	CTCAG	2 cut(s)	322, 805
BspLI	GGNNCC	4 cut(s)	37, 235, 703, 737
BspMI	ACCTGC	1 cut(s)	602
BspPI	GGATC	1 cut(s)	139
BspQI	GCTCTTC	2 cut(s)	103, 280
BspT104I	TTCGAA	2 cut(s)	396, 621
BspT107I	GGYRCC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	206, 376
BssECI	CCNNGG	2 cut(s)	302, 325
BssMI	GATC	2 cut(s)	131, 634
BssNI	GRCGYC	3 cut(s)	36, 174, 436
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	2 cut(s)	103, 280
BstACI	GRCGYC	3 cut(s)	36, 174, 436
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstBAI	YACGTR	1 cut(s)	644
BstBI	TTCGAA	2 cut(s)	396, 621
BstC8I	GCNNGC	3 cut(s)	495, 655, 798
BstDEI	CTNAG	3 cut(s)	140, 309, 792
BstF5I	GGATG	1 cut(s)	703
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	2 cut(s)	134, 637
BstMAI	GTCTC	1 cut(s)	795
BstMBI	GATC	2 cut(s)	131, 634
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 260, 296, 313, 659
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	671
BstSCI	CCNGG	1 cut(s)	324
BstV1I	GCAGC	3 cut(s)	80, 303, 453
BstV2I	GAAGAC	1 cut(s)	431
BstXI	CCANNNNNNTGG	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	514
BsuRI	GGCC	4 cut(s)	307, 340, 704, 738
BtsCI	GGATG	1 cut(s)	703
BtsIMutI	CAGTG	1 cut(s)	369
BveI	ACCTGC	1 cut(s)	602
Cac8I	GCNNGC	3 cut(s)	495, 655, 798
CaiI	CAGNNNCTG	1 cut(s)	316
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	3 cut(s)	541, 702, 736
CseI	GACGC	5 cut(s)	167, 182, 425, 437, 659
Csp6I	GTAC	3 cut(s)	412, 641, 665
CviAII	CATG	3 cut(s)	103, 432, 668
CviQI	GTAC	3 cut(s)	412, 641, 665
DdeI	CTNAG	3 cut(s)	140, 309, 792
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	2 cut(s)	133, 636
DpnII	GATC	2 cut(s)	131, 634
DraI	TTTAAA	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	103, 280
EarI	CTCTTC	2 cut(s)	103, 280
EciI	GGCGGA	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	541
EcoO109I	RGGNCCY	2 cut(s)	541, 736
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	302
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	3 cut(s)	106, 435, 671
FatI	CATG	3 cut(s)	102, 431, 667
FauI	CCCGC	1 cut(s)	527
FblI	GTMKAC	3 cut(s)	111, 153, 219
Fnu4HI	GCNGC	5 cut(s)	34, 94, 317, 467, 627
FokI	GGATG	1 cut(s)	710
Fsp4HI	GCNGC	5 cut(s)	34, 94, 317, 467, 627
FspBI	CTAG	2 cut(s)	740, 808
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	5 cut(s)	34, 94, 317, 467, 627
GsuI	CTGGAG	2 cut(s)	243, 504
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	4 cut(s)	307, 340, 704, 738
HapII	CCGG	2 cut(s)	117, 177
HgaI	GACGC	5 cut(s)	167, 182, 425, 437, 659
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	3 cut(s)	36, 174, 436
Hin1II	CATG	3 cut(s)	106, 435, 671
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HinfI	GANTC	4 cut(s)	279, 515, 566, 788
HpaII	CCGG	2 cut(s)	117, 177
Hpy166II	GTNNAC	4 cut(s)	112, 154, 220, 649
Hpy188I	TCNGA	6 cut(s)	233, 284, 312, 364, 760, 787
Hpy188III	TCNNGA	2 cut(s)	386, 443
Hpy8I	GTNNAC	4 cut(s)	112, 154, 220, 649
Hpy99I	CGWCG	3 cut(s)	161, 431, 680
HpyAV	CCTTC	2 cut(s)	742, 796
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	5 cut(s)	193, 254, 556, 611, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 260, 296, 313, 659
HpyF3I	CTNAG	3 cut(s)	140, 309, 792
HpySE526I	ACGT	1 cut(s)	643
Hsp92I	GRCGYC	3 cut(s)	36, 174, 436
Hsp92II	CATG	3 cut(s)	106, 435, 671
HspAI	GCGC	1 cut(s)	36
KasI	GGCGCC	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	131, 634
LguI	GCTCTTC	2 cut(s)	103, 280
LmnI	GCTCC	2 cut(s)	304, 449
Lsp1109I	GCAGC	3 cut(s)	80, 303, 453
LweI	GCATC	3 cut(s)	11, 565, 598
MaeI	CTAG	2 cut(s)	740, 808
MaeII	ACGT	1 cut(s)	643
MaeIII	GTNAC	2 cut(s)	247, 320
MalI	GATC	2 cut(s)	133, 636
MboI	GATC	2 cut(s)	131, 634
MboII	GAAGA	4 cut(s)	90, 224, 297, 431
MluCI	AATT	3 cut(s)	508, 684, 717
Mly113I	GGCGCC	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	1 cut(s)	783
MroXI	GAANNNNTTC	1 cut(s)	752
MseI	TTAA	3 cut(s)	68, 489, 546
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	2 cut(s)	117, 177
MspR9I	CCNGG	1 cut(s)	326
Mva1269I	GAATGC	2 cut(s)	752, 774
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	5 cut(s)	30, 260, 296, 313, 659
NarI	GGCGCC	1 cut(s)	36
NdeII	GATC	2 cut(s)	131, 634
NlaIII	CATG	3 cut(s)	106, 435, 671
NlaIV	GGNNCC	4 cut(s)	37, 235, 703, 737
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	671
NspV	TTCGAA	2 cut(s)	396, 621
PciI	ACATGT	1 cut(s)	667
PciSI	GCTCTTC	2 cut(s)	103, 280
PctI	GAATGC	2 cut(s)	752, 774
PdmI	GAANNNNTTC	1 cut(s)	752
PfeI	GAWTC	3 cut(s)	279, 515, 566
PkrI	GCNGC	5 cut(s)	35, 95, 318, 468, 628
PleI	GAGTC	1 cut(s)	796
PluTI	GGCGCC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	796
Ppu21I	YACGTR	1 cut(s)	644
PpuMI	RGGWCCY	1 cut(s)	541
PscI	ACATGT	1 cut(s)	667
Psp5II	RGGWCCY	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	4 cut(s)	37, 235, 703, 737
PspPI	GGNCC	3 cut(s)	541, 702, 736
PspPPI	RGGWCCY	1 cut(s)	541
PstNI	CAGNNNCTG	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	3 cut(s)	413, 642, 666
RsaNI	GTAC	3 cut(s)	412, 641, 665
SapI	GCTCTTC	2 cut(s)	103, 280
SaqAI	TTAA	3 cut(s)	68, 489, 546
SatI	GCNGC	5 cut(s)	34, 94, 317, 467, 627
Sau3AI	GATC	2 cut(s)	131, 634
Sau96I	GGNCC	3 cut(s)	541, 702, 736
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	1 cut(s)	326
SfaNI	GCATC	3 cut(s)	11, 565, 598
SfoI	GGCGCC	1 cut(s)	37
SfuI	TTCGAA	2 cut(s)	396, 621
SinI	GGWCC	1 cut(s)	541
SmlI	CTYRAG	2 cut(s)	53, 536
SmoI	CTYRAG	2 cut(s)	53, 536
Sse9I	AATT	3 cut(s)	508, 684, 717
SsiI	CCGC	5 cut(s)	33, 120, 520, 627, 662
SspDI	GGCGCC	1 cut(s)	35
SspMI	CTAG	2 cut(s)	740, 808
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	4 cut(s)	210, 396, 513, 621
TasI	AATT	3 cut(s)	508, 684, 717
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	2 cut(s)	36, 629
TfiI	GAWTC	3 cut(s)	279, 515, 566
Tru1I	TTAA	3 cut(s)	68, 489, 546
Tru9I	TTAA	3 cut(s)	68, 489, 546
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	3 cut(s)	93, 316, 466
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	471
TspGWI	ACGGA	3 cut(s)	97, 541, 559
TspRI	CASTG	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	541
XceI	RCATGY	1 cut(s)	671
XmiI	GTMKAC	3 cut(s)	111, 153, 219
XmnI	GAANNNNTTC	1 cut(s)	752
XspI	CTAG	2 cut(s)	740, 808
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.