Rmu_sc0014336.1_g000001

Haloacid dehalogenase-like hydrolase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014336.1
OG0007289
Physical Location & Seq
Forward (+)
533 .. 835
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014336.1_g000001.1.cds

Sequence Viewer

Length: 303 bp
atgggagcgagaccccttcgctttggtaaaatggagggttgcttggtcaaatgctctcacggcggcagcgctcttttgaaaacccttaaacctcttcatcccaagacccacattcgctgcttctctgccctccgatcgcctcgcagggcctacgacgcattgttgttggacgccggaggtactctcttgcagctggccaaccccgtcgaagaggtctacgcctccataggaacccaatacggtgcgtttcggtaccacaattcccgcttgaaaaaaaaatcccatcacagaatccagttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HAD_2

Protein Analysis

100

Amino Acids

11.19

Weight (kDa)

10.3

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 216
AciI CCGC 2 cut(s) 63, 265
AcoI YGGCCR 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 2 cut(s) 181, 254
AfeI AGCGCT 1 cut(s) 70
AgsI TTSAA 2 cut(s) 79, 271
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 4
Aor51HI AGCGCT 1 cut(s) 70
AoxI GGCC 2 cut(s) 147, 195
ApeKI GCWGC 3 cut(s) 66, 117, 190
Asp718I GGTACC 1 cut(s) 252
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 147
BalI TGGCCA 1 cut(s) 197
BanI GGYRCC 1 cut(s) 252
BbvI GCAGC 3 cut(s) 78, 104, 202
BccI CCATC 1 cut(s) 291
BceAI ACGGC 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 4
BfoI RGCGCY 1 cut(s) 72
BisI GCNGC 4 cut(s) 64, 67, 118, 191
BlsI GCNGC 4 cut(s) 65, 68, 119, 192
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 2 cut(s) 232, 254
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 295
BseXI GCAGC 3 cut(s) 78, 104, 202
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 2 cut(s) 149, 197
BshNI GGYRCC 1 cut(s) 252
BsiEI CGRYCG 1 cut(s) 137
BsiSI CCGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 4
BsnI GGCC 2 cut(s) 149, 197
Bso31I GGTCTC 1 cut(s) 4
Bsp143I GATC 1 cut(s) 134
BspACI CCGC 2 cut(s) 63, 265
BspANI GGCC 2 cut(s) 149, 197
BspLI GGNNCC 2 cut(s) 232, 254
BspT107I GGYRCC 1 cut(s) 252
BspTNI GGTCTC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 295
BssMI GATC 1 cut(s) 134
BssNI GRCGYC 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 2 cut(s) 99, 204
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 195
BstF5I GGATG 1 cut(s) 97
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 1 cut(s) 137
BstMAI GTCTC 1 cut(s) 4
BstMBI GATC 1 cut(s) 134
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 2 cut(s) 60, 155
BstV1I GCAGC 3 cut(s) 78, 104, 202
BsuRI GGCC 2 cut(s) 149, 197
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 195
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 147
CseI GACGC 2 cut(s) 164, 179
Csp6I GTAC 2 cut(s) 180, 253
CviJI RGCY 3 cut(s) 149, 193, 197
CviKI_1 RGCY 3 cut(s) 149, 193, 197
CviQI GTAC 2 cut(s) 180, 253
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 99, 204
EarI CTCTTC 2 cut(s) 99, 204
Eco31I GGTCTC 1 cut(s) 4
Eco47III AGCGCT 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 147
FaiI YATR 1 cut(s) 227
FauI CCCGC 1 cut(s) 272
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 4 cut(s) 64, 67, 118, 191
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 4 cut(s) 64, 67, 118, 191
GlaI GCGC 1 cut(s) 70
GluI GCNGC 4 cut(s) 64, 67, 118, 191
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 2 cut(s) 149, 197
HapII CCGG 1 cut(s) 174
HgaI GACGC 2 cut(s) 164, 179
HhaI GCGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 171
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 1 cut(s) 291
HpaII CCGG 1 cut(s) 174
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 2 cut(s) 158, 209
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4V TGCA 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 155
Hsp92I GRCGYC 1 cut(s) 171
HspAI GCGC 1 cut(s) 69
KpnI GGTACC 1 cut(s) 256
Kzo9I GATC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 3 cut(s) 130, 179, 187
Lsp1109I GCAGC 3 cut(s) 78, 104, 202
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MboII GAAGA 2 cut(s) 86, 221
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 1 cut(s) 259
MluNI TGGCCA 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 7 cut(s) 28, 102, 140, 150, 170, 205, 232
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
MseI TTAA 1 cut(s) 87
Msp20I TGGCCA 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 60, 155
NdeII GATC 1 cut(s) 134
NlaIV GGNNCC 2 cut(s) 232, 254
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 4 cut(s) 65, 68, 119, 192
Ple19I CGATCG 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 232, 254
PspPI GGNCC 1 cut(s) 147
PvuI CGATCG 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 2 cut(s) 181, 254
RsaNI GTAC 2 cut(s) 180, 253
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 4 cut(s) 64, 67, 118, 191
Sau3AI GATC 1 cut(s) 134
Sau96I GGNCC 1 cut(s) 147
SetI ASST 4 cut(s) 94, 181, 195, 216
Sse9I AATT 1 cut(s) 259
SsiI CCGC 2 cut(s) 63, 265
TaaI ACNGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 207
TasI AATT 1 cut(s) 259
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseI GCWGC 3 cut(s) 66, 117, 190
TspDTI ATGAA 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.