Rorug04G0322900

Haloacid dehalogenase-like hydrolase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007289
Physical Location & Seq
Reverse (-)
49833103 .. 49833548
446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0322900.1

Sequence Viewer

Length: 210 bp
ATGGCAGATTGGGGACCAGTGGTGATAGCGGTGGTGTTGTTTGTGCTGTTAAGTCCGGGGCTACTGTTTCAGCTGCCGGGGAAGGGCAGAGTGGTGGAGTTTGGCAACATGCAAACCAGTGGACTATCCATCCTCGTCCACACCATCATCTTCTTTGGCCTCATCACCATCTTCCTCATCGCCATTGGCGTTCACATCTACACTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HAD_2

Protein Analysis

69

Amino Acids

7.41

Weight (kDa)

6.69

Isoelectric Point (pI)

21.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 67 4.1e-37 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 83
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 2 cut(s) 57, 78
AsuHPI GGTGA 2 cut(s) 34, 157
AvaII GGWCC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 60
BccI CCATC 3 cut(s) 137, 152, 176
BcnI CCSGG 2 cut(s) 57, 78
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
Bme1390I CCNGG 2 cut(s) 57, 78
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 2 cut(s) 57, 78
BpuMI CCSGG 2 cut(s) 57, 78
BsaJI CCNNGG 2 cut(s) 56, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 3 cut(s) 17, 117, 208
BseDI CCNNGG 2 cut(s) 56, 77
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 83
BseNI ACTGG 3 cut(s) 17, 117, 208
BseXI GCAGC 1 cut(s) 60
BshFI GGCC 1 cut(s) 159
BsiSI CCGG 2 cut(s) 56, 77
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 1 cut(s) 159
BspACI CCGC 1 cut(s) 29
BspANI GGCC 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 15
BsrI ACTGG 3 cut(s) 17, 117, 208
BssECI CCNNGG 2 cut(s) 56, 77
Bst4CI ACNGT 1 cut(s) 66
BstF5I GGATG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 2 cut(s) 55, 76
BstV1I GCAGC 1 cut(s) 60
BsuRI GGCC 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 1 cut(s) 129
BtsIMutI CAGTG 3 cut(s) 24, 124, 201
Cfr13I GGNCC 1 cut(s) 14
CviAII CATG 1 cut(s) 109
CviJI RGCY 3 cut(s) 61, 73, 159
CviKI_1 RGCY 3 cut(s) 61, 73, 159
Eco47I GGWCC 1 cut(s) 14
FaeI CATG 1 cut(s) 112
FaiI YATR 1 cut(s) 110
FaqI GGGAC 1 cut(s) 27
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 74
GluI GCNGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 159
HapII CCGG 2 cut(s) 56, 77
Hin1II CATG 1 cut(s) 112
HpaII CCGG 2 cut(s) 56, 77
HphI GGTGA 2 cut(s) 34, 157
Hpy166II GTNNAC 3 cut(s) 122, 139, 193
Hpy8I GTNNAC 3 cut(s) 122, 139, 193
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 112
Hsp92II CATG 1 cut(s) 112
LpnPI CCDG 5 cut(s) 30, 69, 90, 130, 189
Lsp1109I GCAGC 1 cut(s) 60
MboII GAAGA 2 cut(s) 142, 163
MnlI CCTC 3 cut(s) 143, 170, 185
MseI TTAA 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 2 cut(s) 56, 77
MspR9I CCNGG 2 cut(s) 57, 78
NciI CCSGG 2 cut(s) 57, 78
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 15
NspI RCATGY 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PkrI GCNGC 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 73
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 1 cut(s) 74
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 57, 78
SetI ASST 1 cut(s) 75
SgeI CNNG 8 cut(s) 29, 68, 69, 89, 90, 121, 129, 146
SinI GGWCC 1 cut(s) 14
SsiI CCGC 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 55, 76
TaaI ACNGT 1 cut(s) 66
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 3 cut(s) 24, 124, 208
TseI GCWGC 1 cut(s) 73
TspRI CASTG 3 cut(s) 24, 124, 208
VpaK11BI GGWCC 1 cut(s) 14
XceI RCATGY 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.