Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007289

Physical Location & Seq

Genomic Coordinates Forward (+)

54028879 .. 54030272

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG386300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAGGGTTGCTTGATCAAATGCTCTCACGGCGGCAGCGCTCTCTTGAAAACCCTTAAACCTCTTCATCATCCCAAAACCCACATTCGCTGCTTCTCTTCAACGCCAATTCGCTCCGGCGAAGCCCTCCGATCGCCTCGCAGAGCCTACGACGCATTGTTGTTGGACGCCGGAGGCACTCTCTTGCAGCTGGCCAACCCCGTCGAAGAGGTCTACGCCTCCATAGGAACCCAATACGGTGTGACTGCAACTCCAGCTGAAATCAAGCAGGGGTTCAGAAGAGCCTTCTCTGCTCCTTGGCCTCAAAAGCTCCGATACCAGGGAGATGGGAGGCCATTTTGGAAACTAGTTGTTTCAGAAGCCACTGGTTGTTCTGATCTTGATTATTTCGAACACGTCTATCAGTACTATGCTAGAGGTGATTCATGGCGTTTACCCGATGGAGCTTATGAAACAATGGTACTTCTCAAGGATGCTAGAGTTAAGCTTGCTGTTGTATCGAATTTTGACTCCCGCTTAAGGAAGCTACTCGAGGAGCTGAATGTGTTGCATCTGTTTGATGCTGTTATCATATCTTCAGAGGTTGGTTCTGAAAAACCAGATGCAAACATATTTAAAGCTGCTTTAGATCAAACTCATGCGGATGCTGGCAAGGCAGTACATGTTGGTGATGATGAAAATGCAGATAAGATTGGGGCCAATGCTGTTGGAATTGATTGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

241

Amino Acids

26.55

Weight (kDa)

6.45

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	50 - 237	2.8e-20	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	129 - 240	6.5e-15	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14310
fragaria_vesca	FvH4_4g31490 FvH4_4g31490 FvH4_4g31490 FvH4_4g31490 FvH4_4g31490
malus_domestica	MD05G1042500.v1.1 MD13G1073200.v1.1 MD16G1074400.v1.1
prunus_persica	Prupe.1G272900_v2.0.a1
pyrus_communis	pycom13g06560 pycom16g06440 pycom17g12220
rosa_chinensis	RchiOBHm_Chr4g0439981
rosa_laevigata	RLG00000006218
rosa_multiflora	Rmu_sc0014336.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380930
rosa_rugosa	Rorug04G0322800 Rorug04G0322900
rosa_samantha	Rh1BG026500 Rh4AG374000 Rh4BG386300 Rh4CG400800 Rh4DG380600
rosa_wichuraiana	Rw4G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	3 cut(s)	33, 514, 641
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	502
AcuI	CTGAAG	1 cut(s)	561
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	3 cut(s)	407, 462, 660
AfeI	AGCGCT	1 cut(s)	40
AfiI	CCNNNNNNNGG	2 cut(s)	319, 519
AflII	CTTAAG	1 cut(s)	517
AflIII	ACRYGT	2 cut(s)	394, 661
AgsI	TTSAA	2 cut(s)	49, 102
AhlI	ACTAGT	1 cut(s)	346
AjiI	CACGTC	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	8 cut(s)	190, 257, 310, 446, 487, 526, 538, 620
AluI	AGCT	8 cut(s)	190, 257, 310, 446, 487, 526, 538, 620
Ama87I	CYCGRG	1 cut(s)	530
Aor51HI	AGCGCT	1 cut(s)	40
AoxI	GGCC	4 cut(s)	192, 299, 332, 696
ApeKI	GCWGC	4 cut(s)	36, 90, 187, 620
ApoI	RAATTY	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	696
AsuHPI	GGTGA	2 cut(s)	431, 680
AsuII	TTCGAA	1 cut(s)	390
AvaI	CYCGRG	1 cut(s)	530
BalI	TGGCCA	1 cut(s)	194
BbvI	GCAGC	4 cut(s)	48, 77, 199, 607
BccI	CCATC	2 cut(s)	320, 434
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	320
BclI	TGATCA	1 cut(s)	15
BcuI	ACTAGT	1 cut(s)	346
BfaI	CTAG	3 cut(s)	347, 414, 477
BfoI	RGCGCY	1 cut(s)	42
BfrI	CTTAAG	1 cut(s)	517
BisI	GCNGC	5 cut(s)	34, 37, 91, 188, 621
BlsI	GCNGC	5 cut(s)	35, 38, 92, 189, 622
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	1 cut(s)	320
BmeT110I	CYCGRG	1 cut(s)	530
BmgBI	CACGTC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	696
BmiI	GGNNCC	2 cut(s)	229, 697
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	5 cut(s)	463, 550, 559, 592, 634
BplI	GAGNNNNNCTC	2 cut(s)	165, 197
BpmI	CTGGAG	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	452
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	296, 319
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 519
Bse1I	ACTGG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	296, 319
BseGI	GGATG	3 cut(s)	70, 478, 649
BseLI	CCNNNNNNNGG	2 cut(s)	319, 519
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	548
BseXI	GCAGC	4 cut(s)	48, 77, 199, 607
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	4 cut(s)	194, 301, 334, 698
BsiEI	CGRYCG	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	2 cut(s)	117, 171
BslI	CCNNNNNNNGG	2 cut(s)	319, 519
BsnI	GGCC	4 cut(s)	194, 301, 334, 698
BsoBI	CYCGRG	1 cut(s)	530
Bsp119I	TTCGAA	1 cut(s)	390
Bsp143I	GATC	4 cut(s)	15, 131, 376, 628
BspACI	CCGC	3 cut(s)	33, 514, 641
BspANI	GGCC	4 cut(s)	194, 301, 334, 698
BspLI	GGNNCC	2 cut(s)	229, 697
BspQI	GCTCTTC	1 cut(s)	274
BspT104I	TTCGAA	1 cut(s)	390
BspTI	CTTAAG	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	296, 319
BssMI	GATC	4 cut(s)	15, 131, 376, 628
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	4 cut(s)	69, 103, 201, 274
BstACI	GRCGYC	1 cut(s)	168
BstAFI	CTTAAG	1 cut(s)	517
BstBI	TTCGAA	1 cut(s)	390
BstC8I	GCNNGC	3 cut(s)	192, 489, 649
BstF5I	GGATG	3 cut(s)	70, 478, 649
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	4 cut(s)	18, 134, 379, 631
BstMBI	GATC	4 cut(s)	15, 131, 376, 628
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 152, 254, 290, 307, 653
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	665
BstSCI	CCNGG	1 cut(s)	318
BstV1I	GCAGC	4 cut(s)	48, 77, 199, 607
BstXI	CCANNNNNNTGG	1 cut(s)	326
BsuRI	GGCC	4 cut(s)	194, 301, 334, 698
BtrI	CACGTC	1 cut(s)	397
BtsCI	GGATG	3 cut(s)	70, 478, 649
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	3 cut(s)	192, 489, 649
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	696
CseI	GACGC	2 cut(s)	161, 176
Csp6I	GTAC	3 cut(s)	406, 461, 659
CviAII	CATG	3 cut(s)	426, 638, 662
CviQI	GTAC	3 cut(s)	406, 461, 659
DpnI	GATC	4 cut(s)	17, 133, 378, 630
DpnII	GATC	4 cut(s)	15, 131, 376, 628
DraI	TTTAAA	1 cut(s)	616
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	4 cut(s)	69, 103, 201, 274
EarI	CTCTTC	4 cut(s)	69, 103, 201, 274
Eco130I	CCWWGG	1 cut(s)	296
Eco47III	AGCGCT	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	530
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	3 cut(s)	429, 641, 665
FaiI	YATR	8 cut(s)	224, 411, 427, 450, 572, 611, 639, 663
FatI	CATG	3 cut(s)	425, 637, 661
FauI	CCCGC	1 cut(s)	521
FbaI	TGATCA	1 cut(s)	15
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	5 cut(s)	34, 37, 91, 188, 621
FokI	GGATG	3 cut(s)	57, 485, 656
Fsp4HI	GCNGC	5 cut(s)	34, 37, 91, 188, 621
FspBI	CTAG	3 cut(s)	347, 414, 477
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	5 cut(s)	34, 37, 91, 188, 621
GsuI	CTGGAG	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	4 cut(s)	194, 301, 334, 698
HapII	CCGG	2 cut(s)	117, 171
HgaI	GACGC	2 cut(s)	161, 176
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	429, 641, 665
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	2 cut(s)	422, 509
HpaII	CCGG	2 cut(s)	117, 171
HphI	GGTGA	2 cut(s)	431, 680
Hpy166II	GTNNAC	2 cut(s)	214, 434
Hpy188I	TCNGA	7 cut(s)	131, 278, 314, 358, 376, 580, 592
Hpy188III	TCNNGA	2 cut(s)	46, 380
Hpy8I	GTNNAC	2 cut(s)	214, 434
Hpy99I	CGWCG	2 cut(s)	155, 206
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	5 cut(s)	187, 248, 550, 605, 683
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 152, 254, 290, 307, 653
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	429, 641, 665
HspAI	GCGC	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	15, 131, 376, 628
LguI	GCTCTTC	1 cut(s)	274
LmnI	GCTCC	5 cut(s)	119, 298, 315, 443, 535
Lsp1109I	GCAGC	4 cut(s)	48, 77, 199, 607
LweI	GCATC	5 cut(s)	463, 550, 559, 592, 634
MaeI	CTAG	3 cut(s)	347, 414, 477
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	4 cut(s)	17, 133, 378, 630
MboI	GATC	4 cut(s)	15, 131, 376, 628
MboII	GAAGA	5 cut(s)	56, 90, 218, 291, 567
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	3 cut(s)	108, 502, 711
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	2 cut(s)	144, 688
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	4 cut(s)	57, 483, 518, 615
MslI	CAYNNNNRTG	2 cut(s)	642, 666
Msp20I	TGGCCA	1 cut(s)	194
MspA1I	CMGCKG	2 cut(s)	190, 257
MspCI	CTTAAG	1 cut(s)	517
MspI	CCGG	2 cut(s)	117, 171
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	6 cut(s)	30, 152, 254, 290, 307, 653
NdeII	GATC	4 cut(s)	15, 131, 376, 628
NlaIII	CATG	3 cut(s)	429, 641, 665
NlaIV	GGNNCC	2 cut(s)	229, 697
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	665
NspV	TTCGAA	1 cut(s)	390
PaeR7I	CTCGAG	1 cut(s)	530
PciI	ACATGT	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	5 cut(s)	35, 38, 92, 189, 622
Ple19I	CGATCG	1 cut(s)	134
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
PscI	ACATGT	1 cut(s)	661
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	229, 697
PspPI	GGNCC	1 cut(s)	696
PspXI	VCTCGAGB	1 cut(s)	530
PvuI	CGATCG	1 cut(s)	134
PvuII	CAGCTG	2 cut(s)	190, 257
RsaI	GTAC	3 cut(s)	407, 462, 660
RsaNI	GTAC	3 cut(s)	406, 461, 659
RseI	CAYNNNNRTG	2 cut(s)	642, 666
SapI	GCTCTTC	1 cut(s)	274
SaqAI	TTAA	4 cut(s)	57, 483, 518, 615
SatI	GCNGC	5 cut(s)	34, 37, 91, 188, 621
Sau3AI	GATC	4 cut(s)	15, 131, 376, 628
Sau96I	GGNCC	1 cut(s)	696
ScaI	AGTACT	1 cut(s)	407
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	320
SfaNI	GCATC	5 cut(s)	463, 550, 559, 592, 634
Sfr274I	CTCGAG	1 cut(s)	530
SfuI	TTCGAA	1 cut(s)	390
SlaI	CTCGAG	1 cut(s)	530
SmiMI	CAYNNNNRTG	2 cut(s)	642, 666
SmlI	CTYRAG	3 cut(s)	467, 517, 530
SmoI	CTYRAG	3 cut(s)	467, 517, 530
SpeI	ACTAGT	1 cut(s)	346
Sse9I	AATT	3 cut(s)	108, 502, 711
SsiI	CCGC	3 cut(s)	33, 514, 641
SspMI	CTAG	3 cut(s)	347, 414, 477
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	4 cut(s)	204, 390, 500, 531
TasI	AATT	3 cut(s)	108, 502, 711
TatI	WGTACW	2 cut(s)	405, 658
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	4 cut(s)	57, 483, 518, 615
Tru9I	TTAA	4 cut(s)	57, 483, 518, 615
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	4 cut(s)	36, 90, 187, 620
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	4 cut(s)	56, 414, 465, 690
TspRI	CASTG	1 cut(s)	370
Vha464I	CTTAAG	1 cut(s)	517
XapI	RAATTY	1 cut(s)	502
XceI	RCATGY	1 cut(s)	665
XhoI	CTCGAG	1 cut(s)	530
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	3 cut(s)	347, 414, 477
ZrmI	AGTACT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.