Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008863

Physical Location & Seq

Genomic Coordinates Reverse (-)

33634906 .. 33636604

Gene Structure 1699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGGATAACGGGATTGATCGAGGAGTTAGGATCCACGGTTGTAAGAGACACCACTCTCGACCAACTAGGGTTGAGCGGGAAAAAAGTGGGGATAGATGCCATGATATGGCTTGTGGCCGTGAAGGAATTGCTGATCAAGAAGGAACCACGTGTTACATTGCTCCCCAGGGAGGAGCGAGAGAGGATACAAGCAGATCGTTTCATGGCGTATTGTGAAAGAATGTTTGAACTTCTAAAGAAGCGTAATATCAAATATATGCTAGTGTTTGATGGGAACGCTACTCCGAGAAAGACCGAAATACAGTTGTTGAAGAAAAAGATACAGGAGGGCCGCTGTGATAGTGATGGTGATGAGAAAGTCAACTATGACAAGCCAAAATCTATGTTCATTCCTGACAGGGAAAGGGTACGCAAGTGGTTCATTAAAGAAGATGTGGAGTTTATCGTGGCTCCTTATGAAGCCGATGCTCAATTAACATATCTCGCAATCAAGGGTAAAATAGACGCGGTTATCACAGAGGACACGGACCTTATTCCATTTGGTTGTCCGCGTGTTATCTTTAAATTAGACGCAGATACTCTTACGTGTCAAGATTATGCATTTAATCGTTTAAAATACCATAAGAAATACAGAACATTTATCCAAAAGATGCTTCTAGAGATGTGCATTATCATTGGCTGTGATTACCTACCGAATTTAGAAGGCACAGGCAAATCGAGAGCTAGCGACGCTGTACTGAAACGGCCATCTTACATCGATTTAATTCCCTATTATGAAAACCCTCTCAAGCTTAGAATTGGGGCAGAGAAGTATGAAACATGCAAGGAGGTTATTCTAAAAGAATTCCAGAAAGCAATTAAAGCTTACACTTATCAACAAGTTTATGATCCCGATTCTCATACTTGTGAGCGCTTATCTCATATGGATTTAAAATACAATCTCCTTCGTGAAGATGCAGATAAGATTCTGGGACCATGTTTAAAGGACGAAGCTGTTCATATTATTGCAACAGGAATTAAATCTTCTGAGATCGAGAAAACTTATATAGTAGAAAACACCAGTGACAAAAGAGCTGGAGCCAAAAGGAAGCCTAGTCCGTTTATCACAGGTCATTTCAAACGTCTTGATGATTCTATTGATGGCAAACGTAGAAATAGGGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

390

Amino Acids

45.02

Weight (kDa)

8.71

Isoelectric Point (pI)

30.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XPG_N	PF00752	1 - 101	3.3e-07	XPG N-terminal domain
XPG_I	PF00867	146 - 229	8.9e-20	XPG I-region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36910 FvH4_6g02530 FvH4_7g04680
rosa_laevigata	RLG00000009071 RLG00000026067
rosa_multiflora	Rmu_sc0001753.1_g000028 Rmu_sc0005139.1_g000010 Rmu_sc0014419.1_g000003 Rmu_sc0014419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276940 Rroxscaffold_5G00387150 Rroxscaffold_7G00212230
rosa_rugosa	Rorug05G0542500
rosa_samantha	Rh1BG428500 Rh1CG440900 Rh1DG461300 Rh4BG445000 Rh4BG445100 Rh4CG462300 Rh4CG462400 Rh6CG048900 Rh6DG044600
rosa_wichuraiana	Rw4G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	108
AccBSI	CCGCTC	1 cut(s)	78
AccII	CGCG	2 cut(s)	509, 553
AciI	CCGC	4 cut(s)	78, 334, 509, 551
AclWI	GGATC	3 cut(s)	27, 40, 884
AcoI	YGGCCR	2 cut(s)	117, 746
AcsI	RAATTY	2 cut(s)	697, 845
AcvI	CACGTG	1 cut(s)	152
AfaI	GTAC	2 cut(s)	411, 738
AfeI	AGCGCT	1 cut(s)	914
AfiI	CCNNNNNNNGG	2 cut(s)	108, 172
AflIII	ACRYGT	2 cut(s)	151, 587
AgsI	TTSAA	3 cut(s)	230, 313, 1120
AjnI	CCWGG	1 cut(s)	167
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AluBI	AGCT	5 cut(s)	725, 793, 866, 995, 1076
AluI	AGCT	5 cut(s)	725, 793, 866, 995, 1076
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	3 cut(s)	27, 40, 884
Aor51HI	AGCGCT	1 cut(s)	914
AoxI	GGCC	3 cut(s)	117, 331, 746
ApoI	RAATTY	2 cut(s)	697, 845
Asp700I	GAANNNNTTC	1 cut(s)	996
AspLEI	GCGC	1 cut(s)	915
AspS9I	GGNCC	3 cut(s)	331, 529, 974
AsuHPI	GGTGA	1 cut(s)	362
AsuNHI	GCTAGC	1 cut(s)	725
AvaII	GGWCC	2 cut(s)	529, 974
BaeI	ACNNNNGTAYC	2 cut(s)	401, 434
BamHI	GGATCC	1 cut(s)	32
BbrPI	CACGTG	1 cut(s)	152
BccI	CCATC	4 cut(s)	266, 341, 757, 1136
BceAI	ACGGC	2 cut(s)	104, 761
BciT130I	CCWGG	1 cut(s)	169
BciVI	GTATCC	1 cut(s)	180
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	5 cut(s)	68, 263, 659, 726, 1095
BfoI	RGCGCY	1 cut(s)	916
BfuI	GTATCC	1 cut(s)	180
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	2 cut(s)	529, 974
BmgT120I	GGNCC	3 cut(s)	331, 529, 974
BmiI	GGNNCC	5 cut(s)	34, 147, 453, 975, 1081
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	4 cut(s)	88, 457, 642, 946
BmtI	GCTAGC	1 cut(s)	729
BpmI	CTGGAG	1 cut(s)	1098
BpuEI	CTTGAG	1 cut(s)	773
Bsa29I	ATCGAT	1 cut(s)	759
BsaAI	YACGTR	2 cut(s)	152, 588
BsaJI	CCNNGG	3 cut(s)	36, 167, 168
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 172
Bse1I	ACTGG	1 cut(s)	1062
Bse3DI	GCAATG	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	169
BseCI	ATCGAT	1 cut(s)	759
BseDI	CCNNGG	3 cut(s)	36, 167, 168
BseLI	CCNNNNNNNGG	2 cut(s)	108, 172
BseMI	GCAATG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	1020
BseNI	ACTGG	1 cut(s)	1062
BseRI	GAGGAG	2 cut(s)	38, 188
Bsh1236I	CGCG	2 cut(s)	509, 553
BshFI	GGCC	3 cut(s)	119, 333, 748
BshVI	ATCGAT	1 cut(s)	759
BslFI	GGGAC	1 cut(s)	987
BslI	CCNNNNNNNGG	2 cut(s)	108, 172
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	987
BsnI	GGCC	3 cut(s)	119, 333, 748
Bsp143I	GATC	6 cut(s)	18, 32, 135, 196, 889, 1032
BspACI	CCGC	4 cut(s)	78, 334, 509, 551
BspANI	GGCC	3 cut(s)	119, 333, 748
BspCNI	CTCAG	1 cut(s)	1021
BspDI	ATCGAT	1 cut(s)	759
BspFNI	CGCG	2 cut(s)	509, 553
BspLI	GGNNCC	5 cut(s)	34, 147, 453, 975, 1081
BspOI	GCTAGC	1 cut(s)	729
BspPI	GGATC	3 cut(s)	27, 40, 884
BsrBI	CCGCTC	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	1062
BssECI	CCNNGG	3 cut(s)	36, 167, 168
BssMI	GATC	6 cut(s)	18, 32, 135, 196, 889, 1032
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	40, 306
BstBAI	YACGTR	2 cut(s)	152, 588
BstC8I	GCNNGC	1 cut(s)	727
BstDEI	CTNAG	2 cut(s)	794, 1029
BstDSI	CCRYGG	1 cut(s)	36
BstFNI	CGCG	2 cut(s)	509, 553
BstH2I	RGCGCY	1 cut(s)	916
BstHHI	GCGC	1 cut(s)	915
BstKTI	GATC	6 cut(s)	21, 35, 138, 199, 892, 1035
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	6 cut(s)	18, 32, 135, 196, 889, 1032
BstMWI	GCNNNNNNNGC	2 cut(s)	731, 863
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	825
BstSCI	CCNGG	1 cut(s)	167
BstUI	CGCG	2 cut(s)	509, 553
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
Bsu15I	ATCGAT	1 cut(s)	759
BsuI	GTATCC	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	119, 333, 748
BsuTUI	ATCGAT	1 cut(s)	759
BtgI	CCRYGG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	1069
Cac8I	GCNNGC	1 cut(s)	727
CfoI	GCGC	1 cut(s)	915
Cfr13I	GGNCC	3 cut(s)	331, 529, 974
ClaI	ATCGAT	1 cut(s)	759
CseI	GACGC	3 cut(s)	515, 581, 740
Csp6I	GTAC	2 cut(s)	410, 737
CviAII	CATG	4 cut(s)	103, 205, 822, 978
CviQI	GTAC	2 cut(s)	410, 737
DdeI	CTNAG	2 cut(s)	794, 1029
DpnI	GATC	6 cut(s)	20, 34, 137, 198, 891, 1034
DpnII	GATC	6 cut(s)	18, 32, 135, 196, 889, 1032
DraI	TTTAAA	4 cut(s)	565, 615, 933, 984
EaeI	YGGCCR	2 cut(s)	117, 746
Eco47I	GGWCC	2 cut(s)	529, 974
Eco47III	AGCGCT	1 cut(s)	914
Eco72I	CACGTG	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	845
EcoRII	CCWGG	1 cut(s)	167
EcoT22I	ATGCAT	1 cut(s)	604
FaeI	CATG	4 cut(s)	106, 208, 825, 981
FaqI	GGGAC	1 cut(s)	987
FatI	CATG	4 cut(s)	102, 204, 821, 977
FauI	CCCGC	1 cut(s)	71
FauNDI	CATATG	1 cut(s)	924
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	5 cut(s)	68, 263, 659, 726, 1095
GlaI	GCGC	1 cut(s)	914
GluI	GCNGC	1 cut(s)	334
GsuI	CTGGAG	1 cut(s)	1098
HaeII	RGCGCY	1 cut(s)	916
HaeIII	GGCC	3 cut(s)	119, 333, 748
HgaI	GACGC	3 cut(s)	515, 581, 740
HhaI	GCGC	1 cut(s)	915
Hin1II	CATG	4 cut(s)	106, 208, 825, 981
Hin6I	GCGC	1 cut(s)	913
HinP1I	GCGC	1 cut(s)	913
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	2 cut(s)	791, 864
HinfI	GANTC	3 cut(s)	896, 967, 1133
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	2 cut(s)	288, 1030
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	1 cut(s)	734
HpyAV	CCTTC	4 cut(s)	118, 136, 698, 956
HpyCH4III	ACNGT	2 cut(s)	40, 306
HpyCH4IV	ACGT	4 cut(s)	151, 587, 1123, 1150
HpyCH4V	TGCA	5 cut(s)	602, 669, 825, 959, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	731, 863
HpyF3I	CTNAG	2 cut(s)	794, 1029
HpySE526I	ACGT	4 cut(s)	151, 587, 1123, 1150
Hsp92II	CATG	4 cut(s)	106, 208, 825, 981
HspAI	GCGC	1 cut(s)	913
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	6 cut(s)	18, 32, 135, 196, 889, 1032
LmnI	GCTCC	4 cut(s)	168, 175, 457, 1079
LweI	GCATC	4 cut(s)	88, 457, 642, 946
MaeI	CTAG	5 cut(s)	68, 263, 659, 726, 1095
MaeII	ACGT	4 cut(s)	151, 587, 1123, 1150
MaeIII	GTNAC	2 cut(s)	154, 1064
MalI	GATC	6 cut(s)	20, 34, 137, 198, 891, 1034
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	6 cut(s)	18, 32, 135, 196, 889, 1032
MboII	GAAGA	4 cut(s)	325, 443, 965, 1017
MflI	RGATCY	1 cut(s)	32
MluCI	AATT	9 cut(s)	128, 473, 566, 697, 765, 798, 845, 858, 1017
MnlI	CCTC	7 cut(s)	16, 166, 177, 322, 514, 795, 823
Mph1103I	ATGCAT	1 cut(s)	604
MroXI	GAANNNNTTC	1 cut(s)	996
MslI	CAYNNNNRTG	1 cut(s)	906
MspA1I	CMGCKG	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	2 cut(s)	509, 553
MwoI	GCNNNNNNNGC	2 cut(s)	731, 863
NdeI	CATATG	1 cut(s)	924
NdeII	GATC	6 cut(s)	18, 32, 135, 196, 889, 1032
NheI	GCTAGC	1 cut(s)	725
NlaIII	CATG	4 cut(s)	106, 208, 825, 981
NlaIV	GGNNCC	5 cut(s)	34, 147, 453, 975, 1081
NmuCI	GTSAC	1 cut(s)	1064
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	1 cut(s)	825
PasI	CCCWGGG	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	996
PfeI	GAWTC	3 cut(s)	896, 967, 1133
PflMI	CCANNNNNTGG	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	335
PmaCI	CACGTG	1 cut(s)	152
PmlI	CACGTG	1 cut(s)	152
Ppu21I	YACGTR	2 cut(s)	152, 588
Psp6I	CCWGG	1 cut(s)	167
PspCI	CACGTG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	5 cut(s)	34, 147, 453, 975, 1081
PspPI	GGNCC	3 cut(s)	331, 529, 974
PsuI	RGATCY	1 cut(s)	32
RsaI	GTAC	2 cut(s)	411, 738
RsaNI	GTAC	2 cut(s)	410, 737
RseI	CAYNNNNRTG	1 cut(s)	906
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	6 cut(s)	18, 32, 135, 196, 889, 1032
Sau96I	GGNCC	3 cut(s)	331, 529, 974
ScrFI	CCNGG	1 cut(s)	169
SfaNI	GCATC	4 cut(s)	88, 457, 642, 946
SinI	GGWCC	2 cut(s)	529, 974
SmiMI	CAYNNNNRTG	1 cut(s)	906
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
Sse9I	AATT	9 cut(s)	128, 473, 566, 697, 765, 798, 845, 858, 1017
SsiI	CCGC	4 cut(s)	78, 334, 509, 551
SspMI	CTAG	5 cut(s)	68, 263, 659, 726, 1095
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	40, 306
TaiI	ACGT	4 cut(s)	154, 590, 1126, 1153
TaqI	TCGA	5 cut(s)	21, 60, 719, 759, 1035
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	9 cut(s)	128, 473, 566, 697, 765, 798, 845, 858, 1017
TatI	WGTACW	1 cut(s)	736
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	3 cut(s)	896, 967, 1133
TscAI	CASTG	1 cut(s)	1069
TseFI	GTSAC	1 cut(s)	1064
Tsp45I	GTSAC	1 cut(s)	1064
TspDTI	ATGAA	7 cut(s)	193, 379, 412, 474, 792, 831, 989
TspGWI	ACGGA	2 cut(s)	542, 1089
TspRI	CASTG	1 cut(s)	1069
Van91I	CCANNNNNTGG	1 cut(s)	108
VpaK11BI	GGWCC	2 cut(s)	529, 974
XapI	RAATTY	2 cut(s)	697, 845
XbaI	TCTAGA	1 cut(s)	658
XceI	RCATGY	1 cut(s)	825
XmnI	GAANNNNTTC	1 cut(s)	996
XspI	CTAG	5 cut(s)	68, 263, 659, 726, 1095
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.