Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008863

Physical Location & Seq

Genomic Coordinates Reverse (-)

331284 .. 332862

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026067

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGGGATAGGAAAGGGAAGCGAACTGTTGGATGACTTTGGAGACAACGCAGTAAAAATAGGCATGCGCCTCGACAGACTGGGCAGTGAGGGTATTACGAGAGTAGGGGTTGATGCCACTCCCTGGCTTGTGACCGTTCACCATACACTTGAGGATCACCAAAAGAAAAATTACGAACTGCATGCAAAACTTTTCATGGAGTATTGCGGTAAGAGGATTAATGTACTAAAGCGGAATGGACTTATACCGACTATGGTCTTTGATGGAAATGCTACACCATTAAAAATCCACATAAAGGAGCTGAGGAAAGCGATTAGTGATGAAGACAAGAACAACAACAACAACAACATCAATACGAATGAGATACGGGATCCTGGTAGTGATATCAGTGACAGTGATAGTGATGTTAATGTCAACAGTGATAGTGAGCCTGTAGACAATAAGTCACCCTATAAGTGGCCAAAACATAGATACATTCCTGAAAGGTCCGAAGTAGTCAAGTGGTTGACCGAGGAGATGGATGTAAAGTTCTTTGTGGCTCCTTATGAAGCCGATGCCCAATTGACACACTTGGCAAGCAAGAAAATAATAGATGCCGTCATCACCAATGATTCAGACCTTATAGCATTCGGATGTAAAAAAATTATCTATCACATTGATTTTGAAGAAGAGACATGCGATTATTACTCATTTGATCGTTTAAAAGAAGTGAACGATGCCTACAAAGATTTTTCGCAAAAGAAGCTTCTAGAAATGGCAATAATGATAGGCTGCGATTATTTACCAAATTTGGCAGGCATAGGCATTGGTAAAGCTTACGATGAGATAATGAAGCATAAACATTATGAGAATGTAATTGCCTGGTCGAAAAAAAAGCTGGTGCTTAGAACTGGGGTCGGGAATAAGCAAGATACAACTTTGAGGACGGAGATTCTACAATGTTTTCAAACGGCAATTCTAGCGTTCACATATCAACAAGTTTATAATCCCGAATCTAAAGTTTGTGAACGCTTATCTCATCTAATATATAATAATCTACATAATGTAGTGGTGAGAAACATTACCAGGTTGTTAGGACCACGTTTGAAGGACGAATCTGTTCATAATATTGCAATGGGTAATAGACCTTCGAAGCTCGAGGACATTGATGTAGATAATCGGCCTGAACAGTATCATGGAAAGACGGTTGAGTATGGGCTAAATTCTTTGGAAAGATTTTTTTGTAATAAGAGAAGCCGAAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

416

Amino Acids

47.66

Weight (kDa)

6.3

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XPG_N	PF00752	33 - 108	2e-06	XPG N-terminal domain
XPG_I	PF00867	175 - 259	1.8e-19	XPG I-region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36910 FvH4_6g02530 FvH4_7g04680
rosa_laevigata	RLG00000009071 RLG00000026067
rosa_multiflora	Rmu_sc0001753.1_g000028 Rmu_sc0005139.1_g000010 Rmu_sc0014419.1_g000003 Rmu_sc0014419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276940 Rroxscaffold_5G00387150 Rroxscaffold_7G00212230
rosa_rugosa	Rorug05G0542500
rosa_samantha	Rh1BG428500 Rh1CG440900 Rh1DG461300 Rh4BG445000 Rh4BG445100 Rh4CG462300 Rh4CG462400 Rh6CG048900 Rh6DG044600
rosa_wichuraiana	Rw4G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	984
AccB7I	CCANNNNNTGG	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	435
AciI	CCGC	2 cut(s)	207, 232
AclWI	GGATC	3 cut(s)	162, 365, 378
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	2 cut(s)	787, 1201
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	3 cut(s)	123, 295, 456
AgsI	TTSAA	3 cut(s)	665, 947, 1087
AhdI	GACNNNNNGTC	1 cut(s)	442
AjnI	CCWGG	4 cut(s)	122, 373, 860, 1064
AloI	GAACNNNNNNTCC	2 cut(s)	512, 544
AluBI	AGCT	5 cut(s)	301, 745, 815, 877, 1135
AluI	AGCT	5 cut(s)	301, 745, 815, 877, 1135
Alw26I	GTCTC	2 cut(s)	36, 665
AlwI	GGATC	3 cut(s)	162, 365, 378
Ama87I	CYCGRG	1 cut(s)	1136
AoxI	GGCC	2 cut(s)	458, 1160
ApeKI	GCWGC	1 cut(s)	771
ApoI	RAATTY	2 cut(s)	787, 1201
AseI	ATTAAT	1 cut(s)	219
Asp700I	GAANNNNTTC	1 cut(s)	1098
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	486, 1076
AsuHPI	GGTGA	5 cut(s)	131, 149, 438, 595, 1063
AsuII	TTCGAA	1 cut(s)	1130
AvaI	CYCGRG	1 cut(s)	1136
AvaII	GGWCC	2 cut(s)	486, 1076
BalI	TGGCCA	1 cut(s)	460
BamHI	GGATCC	1 cut(s)	370
BarI	GAAGNNNNNNTAC	2 cut(s)	1111, 1143
BbsI	GAAGAC	1 cut(s)	330
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	758
BccI	CCATC	2 cut(s)	257, 511
BceAI	ACGGC	2 cut(s)	581, 966
BcgI	CGANNNNNNTGC	4 cut(s)	52, 86, 164, 198
BciT130I	CCWGG	4 cut(s)	124, 375, 862, 1066
BcoDI	GTCTC	2 cut(s)	36, 665
BfaI	CTAG	2 cut(s)	749, 959
BfmI	CTRYAG	1 cut(s)	432
BisI	GCNGC	1 cut(s)	772
BlsI	GCNGC	1 cut(s)	773
Bme1390I	CCNGG	4 cut(s)	124, 375, 862, 1066
Bme18I	GGWCC	2 cut(s)	486, 1076
BmeRI	GACNNNNNGTC	1 cut(s)	442
BmeT110I	CYCGRG	1 cut(s)	1136
BmgT120I	GGNCC	2 cut(s)	486, 1076
BmiI	GGNNCC	2 cut(s)	372, 540
BmrFI	CCNGG	4 cut(s)	124, 375, 862, 1066
BmrI	ACTGGG	2 cut(s)	89, 900
BmsI	GCATC	4 cut(s)	103, 544, 583, 706
BmuI	ACTGGG	2 cut(s)	89, 900
BoxI	GACNNNNGTC	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	302
Bpu14I	TTCGAA	1 cut(s)	1130
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	122, 510
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 295, 456
Bse1I	ACTGG	2 cut(s)	84, 895
Bse3DI	GCAATG	1 cut(s)	1119
BseBI	CCWGG	4 cut(s)	124, 375, 862, 1066
BseDI	CCNNGG	2 cut(s)	122, 510
BseGI	GGATG	3 cut(s)	37, 526, 638
BseLI	CCNNNNNNNGG	3 cut(s)	123, 295, 456
BseMI	GCAATG	1 cut(s)	1119
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	2 cut(s)	84, 895
BseRI	GAGGAG	1 cut(s)	527
BseXI	GCAGC	1 cut(s)	758
BshFI	GGCC	2 cut(s)	460, 1162
BsiHKCI	CYCGRG	1 cut(s)	1136
BslI	CCNNNNNNNGG	3 cut(s)	123, 295, 456
BsmAI	GTCTC	2 cut(s)	36, 665
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	2 cut(s)	460, 1162
BsoBI	CYCGRG	1 cut(s)	1136
Bsp119I	TTCGAA	1 cut(s)	1130
Bsp143I	GATC	3 cut(s)	154, 370, 694
BspACI	CCGC	2 cut(s)	207, 232
BspANI	GGCC	2 cut(s)	460, 1162
BspCNI	CTCAG	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	372, 540
BspPI	GGATC	3 cut(s)	162, 365, 378
BspT104I	TTCGAA	1 cut(s)	1130
BsrDI	GCAATG	1 cut(s)	1119
BsrI	ACTGG	2 cut(s)	84, 895
BssECI	CCNNGG	2 cut(s)	122, 510
BssMI	GATC	3 cut(s)	154, 370, 694
Bst2UI	CCWGG	4 cut(s)	124, 375, 862, 1066
Bst4CI	ACNGT	6 cut(s)	27, 136, 395, 419, 1170, 1186
Bst6I	CTCTTC	1 cut(s)	663
BstBI	TTCGAA	1 cut(s)	1130
BstC8I	GCNNGC	4 cut(s)	65, 183, 577, 796
BstDEI	CTNAG	2 cut(s)	302, 884
BstF5I	GGATG	3 cut(s)	37, 526, 638
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	3 cut(s)	157, 373, 697
BstMAI	GTCTC	2 cut(s)	36, 665
BstMBI	GATC	3 cut(s)	154, 370, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	742, 959
BstNI	CCWGG	4 cut(s)	124, 375, 862, 1066
BstNSI	RCATGY	3 cut(s)	67, 185, 678
BstPAI	GACNNNNGTC	1 cut(s)	254
BstSCI	CCNGG	4 cut(s)	122, 373, 860, 1064
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	758
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	460, 1162
BtsCI	GGATG	3 cut(s)	37, 526, 638
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	4 cut(s)	91, 394, 400, 424
Cac8I	GCNNGC	4 cut(s)	65, 183, 577, 796
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	486, 1076
CsiI	ACCWGGT	1 cut(s)	1064
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	5 cut(s)	64, 182, 196, 675, 1175
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	302, 884
DpnI	GATC	3 cut(s)	156, 372, 696
DpnII	GATC	3 cut(s)	154, 370, 694
DraI	TTTAAA	1 cut(s)	702
DriI	GACNNNNNGTC	1 cut(s)	442
EaeI	YGGCCR	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	663
Eam1105I	GACNNNNNGTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	663
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	2 cut(s)	486, 1076
Eco88I	CYCGRG	1 cut(s)	1136
EcoRII	CCWGG	4 cut(s)	122, 373, 860, 1064
EcoRV	GATATC	1 cut(s)	385
FaeI	CATG	5 cut(s)	67, 185, 199, 678, 1178
FatI	CATG	5 cut(s)	63, 181, 195, 674, 1174
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	772
FokI	GGATG	3 cut(s)	44, 533, 645
Fsp4HI	GCNGC	1 cut(s)	772
FspBI	CTAG	2 cut(s)	749, 959
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	772
HaeIII	GGCC	2 cut(s)	460, 1162
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	5 cut(s)	67, 185, 199, 678, 1178
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	2 cut(s)	415, 507
HindII	GTYRAC	2 cut(s)	415, 507
HindIII	AAGCTT	2 cut(s)	743, 813
HinfI	GANTC	4 cut(s)	611, 931, 992, 1094
HphI	GGTGA	5 cut(s)	131, 149, 438, 595, 1063
Hpy166II	GTNNAC	7 cut(s)	139, 415, 436, 507, 712, 966, 1007
Hpy188I	TCNGA	3 cut(s)	490, 616, 632
Hpy188III	TCNNGA	4 cut(s)	479, 749, 898, 989
Hpy8I	GTNNAC	7 cut(s)	139, 415, 436, 507, 712, 966, 1007
HpyAV	CCTTC	2 cut(s)	1081, 1137
HpyCH4III	ACNGT	6 cut(s)	27, 136, 395, 419, 1170, 1186
HpyCH4IV	ACGT	1 cut(s)	1081
HpyCH4V	TGCA	3 cut(s)	181, 185, 1112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	742, 959
HpyF3I	CTNAG	2 cut(s)	302, 884
HpySE526I	ACGT	1 cut(s)	1081
Hsp92II	CATG	5 cut(s)	67, 185, 199, 678, 1178
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	154, 370, 694
LmnI	GCTCC	2 cut(s)	298, 544
Lsp1109I	GCAGC	1 cut(s)	758
LweI	GCATC	4 cut(s)	103, 544, 583, 706
MabI	ACCWGGT	1 cut(s)	1064
MaeI	CTAG	2 cut(s)	749, 959
MaeII	ACGT	1 cut(s)	1081
MaeIII	GTNAC	3 cut(s)	130, 389, 444
MalI	GATC	3 cut(s)	156, 372, 696
MboI	GATC	3 cut(s)	154, 370, 694
MboII	GAAGA	3 cut(s)	335, 677, 680
MfeI	CAATTG	1 cut(s)	560
MflI	RGATCY	1 cut(s)	370
MlsI	TGGCCA	1 cut(s)	460
MluCI	AATT	7 cut(s)	169, 560, 642, 787, 855, 954, 1201
MluNI	TGGCCA	1 cut(s)	460
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	8 cut(s)	80, 82, 145, 207, 297, 505, 915, 1132
Mox20I	TGGCCA	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	1098
MscI	TGGCCA	1 cut(s)	460
MseI	TTAA	4 cut(s)	219, 281, 408, 701
MslI	CAYNNNNRTG	1 cut(s)	631
Msp20I	TGGCCA	1 cut(s)	460
MspR9I	CCNGG	4 cut(s)	124, 375, 862, 1066
MunI	CAATTG	1 cut(s)	560
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	4 cut(s)	124, 375, 862, 1066
MwoI	GCNNNNNNNGC	2 cut(s)	742, 959
NdeII	GATC	3 cut(s)	154, 370, 694
NlaIII	CATG	5 cut(s)	67, 185, 199, 678, 1178
NlaIV	GGNNCC	2 cut(s)	372, 540
NmuCI	GTSAC	3 cut(s)	130, 389, 444
NspI	RCATGY	3 cut(s)	67, 185, 678
NspV	TTCGAA	1 cut(s)	1130
PaeI	GCATGC	2 cut(s)	67, 185
PaeR7I	CTCGAG	1 cut(s)	1136
PctI	GAATGC	1 cut(s)	626
PdmI	GAANNNNTTC	1 cut(s)	1098
PfeI	GAWTC	4 cut(s)	611, 931, 992, 1094
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	773
PshAI	GACNNNNGTC	1 cut(s)	254
PshBI	ATTAAT	1 cut(s)	219
PsiI	TTATAA	1 cut(s)	984
Psp6I	CCWGG	4 cut(s)	122, 373, 860, 1064
PspGI	CCWGG	4 cut(s)	122, 373, 860, 1064
PspN4I	GGNNCC	2 cut(s)	372, 540
PspPI	GGNCC	2 cut(s)	486, 1076
PspXI	VCTCGAGB	1 cut(s)	1136
PsrI	GAACNNNNNNTAC	2 cut(s)	704, 736
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	631
SaqAI	TTAA	4 cut(s)	219, 281, 408, 701
SatI	GCNGC	1 cut(s)	772
Sau3AI	GATC	3 cut(s)	154, 370, 694
Sau96I	GGNCC	2 cut(s)	486, 1076
ScrFI	CCNGG	4 cut(s)	124, 375, 862, 1066
SexAI	ACCWGGT	1 cut(s)	1064
SfaNI	GCATC	4 cut(s)	103, 544, 583, 706
SfcI	CTRYAG	1 cut(s)	432
Sfr274I	CTCGAG	1 cut(s)	1136
SfuI	TTCGAA	1 cut(s)	1130
SinI	GGWCC	2 cut(s)	486, 1076
SlaI	CTCGAG	1 cut(s)	1136
SmiMI	CAYNNNNRTG	1 cut(s)	631
SmlI	CTYRAG	2 cut(s)	149, 1136
SmoI	CTYRAG	2 cut(s)	149, 1136
SphI	GCATGC	2 cut(s)	67, 185
Sse9I	AATT	7 cut(s)	169, 560, 642, 787, 855, 954, 1201
SsiI	CCGC	2 cut(s)	207, 232
SspI	AATATT	1 cut(s)	1108
SspMI	CTAG	2 cut(s)	749, 959
StyD4I	CCNGG	4 cut(s)	122, 373, 860, 1064
TaaI	ACNGT	6 cut(s)	27, 136, 395, 419, 1170, 1186
TaiI	ACGT	1 cut(s)	1084
TaqI	TCGA	4 cut(s)	72, 866, 1130, 1137
TaqII	GACCGA	1 cut(s)	524
TasI	AATT	7 cut(s)	169, 560, 642, 787, 855, 954, 1201
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	4 cut(s)	611, 931, 992, 1094
Tru1I	TTAA	4 cut(s)	219, 281, 408, 701
Tru9I	TTAA	4 cut(s)	219, 281, 408, 701
TscAI	CASTG	4 cut(s)	91, 394, 400, 424
TseFI	GTSAC	3 cut(s)	130, 389, 444
TseI	GCWGC	1 cut(s)	771
Tsp45I	GTSAC	3 cut(s)	130, 389, 444
TspDTI	ATGAA	5 cut(s)	184, 336, 561, 845, 1091
TspGWI	ACGGA	1 cut(s)	941
TspRI	CASTG	4 cut(s)	91, 394, 400, 424
Van91I	CCANNNNNTGG	1 cut(s)	123
VpaK11BI	GGWCC	2 cut(s)	486, 1076
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	2 cut(s)	787, 1201
XbaI	TCTAGA	1 cut(s)	748
XceI	RCATGY	3 cut(s)	67, 185, 678
XhoI	CTCGAG	1 cut(s)	1136
XmiI	GTMKAC	1 cut(s)	435
XmnI	GAANNNNTTC	1 cut(s)	1098
XspI	CTAG	2 cut(s)	749, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.