Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008863

Physical Location & Seq

Genomic Coordinates Forward (+)

63963497 .. 63965278

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G037290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGGGGTAAAAAGAGCAGACGCATTGTTCGACCAGTTGGGACCAACGGTTCTAAAAGACATCCGTCTCGACCAATTGGACTTGAGCGGTAAAAAGGTGGGGATTGATGCCACCTTATGGCTTGGGACCGTCAAAAGTATGCTCAAGGCCAACCAAAATAAATTATCCTCAAGTACTGAAAAGTTTCTCGTCAAGGTCCAAGAGAAGACACATGCAGACAATTTCATTGCTTATTGTGAAGAAAGGTTTAAACTCCTAAACCGGCTTAAAATTAAATCAATGATGGTGTTCGATGGAAATGCTACTCCCAGAAAGACTGAAATAAAGACGTTGAACAAAAAGATAAAGGAGGGCAGCAGCAAGAAGAAGGAGGTGAATGTTGATCCTGATAGTAACATTGATCGTGAGTGTGATAATGACCGCGATAATGAACGTAAGAAAGTGAACTATAATAAGCCAGAAAAAATGTACATTCCTGATAGGAAAAGGGTACTCCAGTGGTTAACTAAAGAAGGTGTGGAGTTTATCGTGGCTCCTTACGAAGCTGATGCTCAATTAACATACTTGACAATAAAGGGTAAAATAGATGCAGTTATCACGGAGGACTCGGACCTCATTGCATTTGGTTGTCCACATGTTATCTATAAGTTGGACGTAAACACTCAAATGTGTAAACACTACTCATTTGATCGTTTAAAGGACCATCATTTATATGGAACATTTACGAAAAAGATGCTTCTGGAGATGTGTATAATGATTGGGTGTGACTACCTACCGAATTTGCAAGGCATAGGCATTCAGAAAGCTGGCGATGCTATAAAGGAATCGCGTTCTTATATCGCTTTAATTCCTTATATGAAGAATCTCAAGCTTAGAATTGAAGGAGATAAGTTTGAAACAGATACGCAAATAATTCTAAAAGAATTCGAGAAAGCAATTAAAGCTTTCACTTATCAACAAGTTTATGATCCTGATTCTCATACTTGTGAACGCTTATCTCATATAAATTATCCTGCCCTTCGTGAAGACGCATATGAGATTTTGGGACCATGTTTAAAGGACAAATCAGTTCATGCTATTGCCACAGGGAGTAGACCTTCTGAGATCGAGGAAGCTGATATAATAAAACAGAAGATCAATGCAGTTAGAGCCAAAAGGCGGACTGGGTTTATCACAGATTTTACGTCTAATTATCGTCCACGGCACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

403

Amino Acids

46.32

Weight (kDa)

8.95

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XPG_N	PF00752	8 - 110	2.5e-07	XPG N-terminal domain
XPG_I	PF00867	172 - 256	5.4e-21	XPG I-region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36910 FvH4_6g02530 FvH4_7g04680
rosa_laevigata	RLG00000009071 RLG00000026067
rosa_multiflora	Rmu_sc0001753.1_g000028 Rmu_sc0005139.1_g000010 Rmu_sc0014419.1_g000003 Rmu_sc0014419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276940 Rroxscaffold_5G00387150 Rroxscaffold_7G00212230
rosa_rugosa	Rorug05G0542500
rosa_samantha	Rh1BG428500 Rh1CG440900 Rh1DG461300 Rh4BG445000 Rh4BG445100 Rh4CG462300 Rh4CG462400 Rh6CG048900 Rh6DG044600
rosa_wichuraiana	Rw4G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	117
AccBSI	CCGCTC	1 cut(s)	87
AccI	GTMKAC	1 cut(s)	1093
AccII	CGCG	2 cut(s)	423, 829
AciI	CCGC	3 cut(s)	87, 421, 1159
AclWI	GGATC	2 cut(s)	377, 962
AcsI	RAATTY	2 cut(s)	778, 923
AfaI	GTAC	3 cut(s)	175, 470, 492
AfiI	CCNNNNNNNGG	2 cut(s)	117, 1158
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	3 cut(s)	334, 881, 896
AloI	GAACNNNNNNTCC	2 cut(s)	33, 65
AluBI	AGCT	5 cut(s)	545, 806, 871, 944, 1115
AluI	AGCT	5 cut(s)	545, 806, 871, 944, 1115
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	377, 962
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	354, 357
ApoI	RAATTY	2 cut(s)	778, 923
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
Asp700I	GAANNNNTTC	1 cut(s)	183
AspS9I	GGNCC	6 cut(s)	41, 126, 196, 610, 700, 1046
AsuHPI	GGTGA	1 cut(s)	385
AvaII	GGWCC	6 cut(s)	41, 126, 196, 610, 700, 1046
BaeI	ACNNNNGTAYC	2 cut(s)	482, 515
BbsI	GAAGAC	2 cut(s)	212, 1032
BbvI	GCAGC	2 cut(s)	366, 369
BccI	CCATC	3 cut(s)	277, 287, 711
BcgI	CGANNNNNNTGC	6 cut(s)	281, 315, 530, 564, 715, 749
BcoDI	GTCTC	1 cut(s)	71
BisI	GCNGC	2 cut(s)	355, 358
BlsI	GCNGC	2 cut(s)	356, 359
BmcAI	AGTACT	1 cut(s)	175
Bme18I	GGWCC	6 cut(s)	41, 126, 196, 610, 700, 1046
BmgT120I	GGNCC	6 cut(s)	41, 126, 196, 610, 700, 1046
BmiI	GGNNCC	4 cut(s)	42, 127, 534, 1047
BmrI	ACTGGG	1 cut(s)	1173
BmsI	GCATC	5 cut(s)	97, 538, 577, 723, 802
BmuI	ACTGGG	1 cut(s)	1173
BoxI	GACNNNNGTC	1 cut(s)	63
BpiI	GAAGAC	2 cut(s)	212, 1032
BpmI	CTGGAG	2 cut(s)	479, 761
BpuEI	CTTGAG	4 cut(s)	103, 128, 154, 851
BsaJI	CCNNGG	1 cut(s)	1199
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 1158
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	3 cut(s)	34, 496, 1168
Bse3DI	GCAATG	2 cut(s)	225, 615
BseDI	CCNNGG	1 cut(s)	1199
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	2 cut(s)	117, 1158
BseMI	GCAATG	2 cut(s)	225, 615
BseMII	CTCAG	1 cut(s)	1092
BseNI	ACTGG	3 cut(s)	34, 496, 1168
BseXI	GCAGC	2 cut(s)	366, 369
Bsh1236I	CGCG	2 cut(s)	423, 829
BshFI	GGCC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	262
BslFI	GGGAC	3 cut(s)	54, 139, 1059
BslI	CCNNNNNNNGG	2 cut(s)	117, 1158
BsmAI	GTCTC	1 cut(s)	71
BsmBI	CGTCTC	1 cut(s)	71
BsmFI	GGGAC	3 cut(s)	54, 139, 1059
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	1 cut(s)	149
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	6 cut(s)	382, 400, 688, 967, 1104, 1134
BspACI	CCGC	3 cut(s)	87, 421, 1159
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	1093
BspFNI	CGCG	2 cut(s)	423, 829
BspLI	GGNNCC	4 cut(s)	42, 127, 534, 1047
BspPI	GGATC	2 cut(s)	377, 962
BsrBI	CCGCTC	1 cut(s)	87
BsrDI	GCAATG	2 cut(s)	225, 615
BsrFI	RCCGGY	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	3 cut(s)	34, 496, 1168
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	1199
BssMI	GATC	6 cut(s)	382, 400, 688, 967, 1104, 1134
Bst4CI	ACNGT	2 cut(s)	49, 130
BstAUI	TGTACA	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	808
BstDEI	CTNAG	2 cut(s)	872, 1101
BstDSI	CCRYGG	1 cut(s)	1199
BstF5I	GGATG	1 cut(s)	60
BstFNI	CGCG	2 cut(s)	423, 829
BstKTI	GATC	6 cut(s)	385, 403, 691, 970, 1107, 1137
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	6 cut(s)	382, 400, 688, 967, 1104, 1134
BstMWI	GCNNNNNNNGC	3 cut(s)	812, 941, 1148
BstNSI	RCATGY	2 cut(s)	215, 638
BstPAI	GACNNNNGTC	1 cut(s)	63
BstUI	CGCG	2 cut(s)	423, 829
BstV1I	GCAGC	2 cut(s)	366, 369
BstV2I	GAAGAC	2 cut(s)	212, 1032
BsuRI	GGCC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	1199
BtgZI	GCGATG	1 cut(s)	825
BtsCI	GGATG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	503
Cac8I	GCNNGC	1 cut(s)	808
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	6 cut(s)	41, 126, 196, 610, 700, 1046
CseI	GACGC	2 cut(s)	29, 1037
Csp6I	GTAC	3 cut(s)	174, 469, 491
CviAII	CATG	4 cut(s)	212, 635, 1050, 1073
CviQI	GTAC	3 cut(s)	174, 469, 491
DdeI	CTNAG	2 cut(s)	872, 1101
DpnI	GATC	6 cut(s)	384, 402, 690, 969, 1106, 1136
DpnII	GATC	6 cut(s)	382, 400, 688, 967, 1104, 1134
DraI	TTTAAA	3 cut(s)	250, 696, 1056
EciI	GGCGGA	1 cut(s)	1174
Eco47I	GGWCC	6 cut(s)	41, 126, 196, 610, 700, 1046
EcoRI	GAATTC	1 cut(s)	923
Esp3I	CGTCTC	1 cut(s)	71
FaeI	CATG	4 cut(s)	215, 638, 1053, 1076
FaqI	GGGAC	3 cut(s)	54, 139, 1059
FatI	CATG	4 cut(s)	211, 634, 1049, 1072
FauNDI	CATATG	1 cut(s)	1033
FblI	GTMKAC	1 cut(s)	1093
Fnu4HI	GCNGC	2 cut(s)	355, 358
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	2 cut(s)	355, 358
GluI	GCNGC	2 cut(s)	355, 358
GsuI	CTGGAG	2 cut(s)	479, 761
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	1 cut(s)	262
HgaI	GACGC	2 cut(s)	29, 1037
Hin1II	CATG	4 cut(s)	215, 638, 1053, 1076
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HindIII	AAGCTT	2 cut(s)	869, 942
HinfI	GANTC	4 cut(s)	605, 824, 862, 974
HpaI	GTTAAC	1 cut(s)	504
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	8 cut(s)	445, 504, 632, 658, 674, 989, 1094, 1199
Hpy188I	TCNGA	3 cut(s)	610, 801, 1102
Hpy188III	TCNNGA	8 cut(s)	68, 386, 404, 476, 740, 928, 971, 1022
Hpy8I	GTNNAC	8 cut(s)	445, 504, 632, 658, 674, 989, 1094, 1199
HpyAV	CCTTC	5 cut(s)	361, 506, 875, 1028, 1107
HpyCH4III	ACNGT	2 cut(s)	49, 130
HpyCH4IV	ACGT	4 cut(s)	329, 433, 654, 1184
HpyCH4V	TGCA	5 cut(s)	215, 590, 620, 784, 1142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	812, 941, 1148
HpyF3I	CTNAG	2 cut(s)	872, 1101
HpySE526I	ACGT	4 cut(s)	329, 433, 654, 1184
Hsp92II	CATG	4 cut(s)	215, 638, 1053, 1076
KspAI	GTTAAC	1 cut(s)	504
Kzo9I	GATC	6 cut(s)	382, 400, 688, 967, 1104, 1134
LmnI	GCTCC	1 cut(s)	538
Lsp1109I	GCAGC	2 cut(s)	366, 369
LweI	GCATC	5 cut(s)	97, 538, 577, 723, 802
MaeII	ACGT	4 cut(s)	329, 433, 654, 1184
MaeIII	GTNAC	2 cut(s)	392, 764
MalI	GATC	6 cut(s)	384, 402, 690, 969, 1106, 1136
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	6 cut(s)	382, 400, 688, 967, 1104, 1134
MboII	GAAGA	6 cut(s)	217, 251, 376, 871, 1037, 1144
MfeI	CAATTG	2 cut(s)	74, 1207
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	630
MnlI	CCTC	6 cut(s)	178, 343, 364, 595, 623, 1102
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	9 cut(s)	249, 267, 273, 503, 557, 695, 845, 939, 1055
MslI	CAYNNNNRTG	3 cut(s)	665, 711, 984
MspI	CCGG	1 cut(s)	262
MssI	GTTTAAAC	1 cut(s)	250
MunI	CAATTG	2 cut(s)	74, 1207
Mva1269I	GAATGC	1 cut(s)	795
MvnI	CGCG	2 cut(s)	423, 829
MwoI	GCNNNNNNNGC	3 cut(s)	812, 941, 1148
NdeI	CATATG	1 cut(s)	1033
NdeII	GATC	6 cut(s)	382, 400, 688, 967, 1104, 1134
NlaIII	CATG	4 cut(s)	215, 638, 1053, 1076
NlaIV	GGNNCC	4 cut(s)	42, 127, 534, 1047
NmuCI	GTSAC	1 cut(s)	764
NspI	RCATGY	2 cut(s)	215, 638
PciI	ACATGT	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	1 cut(s)	795
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	824, 862, 974
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	356, 359
PleI	GAGTC	1 cut(s)	599
PmeI	GTTTAAAC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	599
PscI	ACATGT	1 cut(s)	634
PshAI	GACNNNNGTC	1 cut(s)	63
PspN4I	GGNNCC	4 cut(s)	42, 127, 534, 1047
PspPI	GGNCC	6 cut(s)	41, 126, 196, 610, 700, 1046
RsaI	GTAC	3 cut(s)	175, 470, 492
RsaNI	GTAC	3 cut(s)	174, 469, 491
RseI	CAYNNNNRTG	3 cut(s)	665, 711, 984
SaqAI	TTAA	9 cut(s)	249, 267, 273, 503, 557, 695, 845, 939, 1055
SatI	GCNGC	2 cut(s)	355, 358
Sau3AI	GATC	6 cut(s)	382, 400, 688, 967, 1104, 1134
Sau96I	GGNCC	6 cut(s)	41, 126, 196, 610, 700, 1046
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	1 cut(s)	599
SfaNI	GCATC	5 cut(s)	97, 538, 577, 723, 802
SinI	GGWCC	6 cut(s)	41, 126, 196, 610, 700, 1046
SmiMI	CAYNNNNRTG	3 cut(s)	665, 711, 984
SmlI	CTYRAG	4 cut(s)	82, 143, 169, 866
SmoI	CTYRAG	4 cut(s)	82, 143, 169, 866
SsiI	CCGC	3 cut(s)	87, 421, 1159
TaaI	ACNGT	2 cut(s)	49, 130
TaiI	ACGT	4 cut(s)	332, 436, 657, 1187
TaqI	TCGA	5 cut(s)	30, 69, 291, 927, 1107
TatI	WGTACW	2 cut(s)	173, 468
TfiI	GAWTC	3 cut(s)	824, 862, 974
Tru1I	TTAA	9 cut(s)	249, 267, 273, 503, 557, 695, 845, 939, 1055
Tru9I	TTAA	9 cut(s)	249, 267, 273, 503, 557, 695, 845, 939, 1055
TscAI	CASTG	1 cut(s)	503
TseFI	GTSAC	1 cut(s)	764
TseI	GCWGC	2 cut(s)	354, 357
Tsp45I	GTSAC	1 cut(s)	764
TspDTI	ATGAA	4 cut(s)	214, 444, 872, 1061
TspGWI	ACGGA	2 cut(s)	53, 614
TspRI	CASTG	1 cut(s)	503
Van91I	CCANNNNNTGG	1 cut(s)	117
VpaK11BI	GGWCC	6 cut(s)	41, 126, 196, 610, 700, 1046
XapI	RAATTY	2 cut(s)	778, 923
XceI	RCATGY	2 cut(s)	215, 638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	1093
XmnI	GAANNNNTTC	1 cut(s)	183
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.