FvH4_7g04680

5'-3' exodeoxyribonuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008863
Physical Location & Seq
Reverse (-)
5161004 .. 5162943
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04680.t1

Sequence Viewer

Length: 774 bp
ATGGGGATAGGAAACGGAAGCGAATTGTTGGATAGCTTTGGAGACGCAGTAAAAAGAGGCATTCCCCTAGATAGTTTGGTCAACGAAGGCATTACGAATGTTGGGGTTGACACCACTCATAGGCTTGTGATCGCGAAGAGTCGACTTCAGGCTCACCAAAGGAGAGGCCACTCCTTGGTCAGTGAGGGCCTTACGAATGATGAACTGCATGCAGAATATTTCATGGATGATTGTTGTAAGAATGTTGATGTACTGAGGCAGAATGGACTTGATCCTATTTTGGTGTTTGATGGGAATGCTACACCTTTAAAGACCAAAATAATGGAGCTGAGGAGAGCGATACGTGAGGAAAACAAGAAGAAGAATAAAAACACAAGTAAGAAAAAGCATCCAGCTGATAGTGCTTTTAGTGCCCGAAATATTCAAAGTTACAAGTGGCCAGTTCAAAGATACATTCCTGACAGATCCAACGTATGCAAGTGGTTGATAAAGAAAGGAATACAATTCTTTGTAGCTCCGTACGAAGCGGATGCCCAATTGACACACTTGGCAAGCAAGAAAATAATAGATGCCATCATCACTATTGATTCAGACCTTATAGCATTTGGATGTGGAAAACGGTTAAAAGAAGCGAAGGATGCCTACAAAAACTTTACGCCACACAAGCTTTTAGAAATGTCAATTATAATTGGTTGCGACTATTTACCAAATTTGGCAGGCATAGGCATTGCAAAAGCTCCCGAAAAGGTTGCGAAGGCTGATTACAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03430 map03430
Pfam Domains
Protein Families
XPG_I XPG_N

Protein Analysis

258

Amino Acids

28.68

Weight (kDa)

9.22

Isoelectric Point (pI)

30.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XPG_I PF00867 166 - 212 4.5e-12 XPG I-region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 686
AccB7I CCANNNNNTGG 1 cut(s) 175
AccI GTMKAC 1 cut(s) 142
AccII CGCG 1 cut(s) 134
AciI CCGC 1 cut(s) 527
AclWI GGATC 2 cut(s) 266, 459
AcoI YGGCCR 1 cut(s) 437
AcsI RAATTY 1 cut(s) 709
AcuI CTGAAG 1 cut(s) 131
AfaI GTAC 2 cut(s) 252, 521
AfiI CCNNNNNNNGG 2 cut(s) 120, 175
AgsI TTSAA 2 cut(s) 425, 446
AluBI AGCT 6 cut(s) 36, 328, 395, 515, 667, 737
AluI AGCT 6 cut(s) 36, 328, 395, 515, 667, 737
Alw26I GTCTC 1 cut(s) 36
AlwI GGATC 2 cut(s) 266, 459
AoxI GGCC 3 cut(s) 166, 187, 437
ApoI RAATTY 1 cut(s) 709
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 146
BaeGI GKGCMC 1 cut(s) 415
BalI TGGCCA 1 cut(s) 439
BarI GAAGNNNNNNTAC 3 cut(s) 626, 658, 746
BbvCI CCTCAGC 1 cut(s) 329
BccI CCATC 2 cut(s) 284, 581
BcgI CGANNNNNNTGC 4 cut(s) 512, 546, 731, 765
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 187
BmsI GCATC 4 cut(s) 397, 520, 559, 628
Bpu10I CCTNAGC 1 cut(s) 329
BsaAI YACGTR 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 175
Bse1I ACTGG 1 cut(s) 440
Bse3DI GCAATG 1 cut(s) 726
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 5 cut(s) 232, 388, 535, 614, 643
BseLI CCNNNNNNNGG 2 cut(s) 120, 175
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 2 cut(s) 245, 320
BseNI ACTGG 1 cut(s) 440
BseRI GAGGAG 1 cut(s) 346
BseSI GKGCMC 1 cut(s) 415
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 3 cut(s) 168, 189, 439
BsiWI CGTACG 1 cut(s) 519
BslI CCNNNNNNNGG 2 cut(s) 120, 175
BsmAI GTCTC 1 cut(s) 36
BsmBI CGTCTC 1 cut(s) 36
BsmI GAATGC 2 cut(s) 60, 301
BsnI GGCC 3 cut(s) 168, 189, 439
Bsp1286I GDGCHC 1 cut(s) 415
Bsp143I GATC 3 cut(s) 129, 271, 464
Bsp68I TCGCGA 1 cut(s) 134
BspACI CCGC 1 cut(s) 527
BspANI GGCC 3 cut(s) 168, 189, 439
BspCNI CTCAG 2 cut(s) 246, 321
BspFNI CGCG 1 cut(s) 134
BspPI GGATC 2 cut(s) 266, 459
BsrDI GCAATG 1 cut(s) 726
BsrI ACTGG 1 cut(s) 440
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 3 cut(s) 129, 271, 464
BssT1I CCWWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 621
Bst6I CTCTTC 1 cut(s) 131
BstBAI YACGTR 1 cut(s) 344
BstC8I GCNNGC 3 cut(s) 210, 553, 718
BstDEI CTNAG 2 cut(s) 254, 329
BstF5I GGATG 5 cut(s) 232, 388, 535, 614, 643
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 3 cut(s) 132, 274, 467
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 3 cut(s) 129, 271, 464
BstMWI GCNNNNNNNGC 4 cut(s) 401, 410, 638, 664
BstNSI RCATGY 1 cut(s) 212
BstSLI GKGCMC 1 cut(s) 415
BstUI CGCG 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 464
BstXI CCANNNNNNTGG 1 cut(s) 322
BstYI RGATCY 1 cut(s) 464
BsuRI GGCC 3 cut(s) 168, 189, 439
BtsCI GGATG 5 cut(s) 232, 388, 535, 614, 643
BtsIMutI CAGTG 1 cut(s) 187
BtuMI TCGCGA 1 cut(s) 134
Cac8I GCNNGC 3 cut(s) 210, 553, 718
Cfr13I GGNCC 1 cut(s) 187
CseI GACGC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 251, 520
CviAII CATG 2 cut(s) 209, 223
CviQI GTAC 2 cut(s) 251, 520
DdeI CTNAG 2 cut(s) 254, 329
DpnI GATC 3 cut(s) 131, 273, 466
DpnII GATC 3 cut(s) 129, 271, 464
DraI TTTAAA 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 36
FaeI CATG 2 cut(s) 212, 226
FaiI YATR 7 cut(s) 120, 210, 224, 475, 599, 686, 722
FatI CATG 2 cut(s) 208, 222
FblI GTMKAC 1 cut(s) 142
FokI GGATG 5 cut(s) 239, 375, 542, 621, 650
FspBI CTAG 1 cut(s) 68
HaeIII GGCC 3 cut(s) 168, 189, 439
HgaI GACGC 1 cut(s) 53
Hin1II CATG 2 cut(s) 212, 226
HincII GTYRAC 3 cut(s) 82, 109, 143
HindII GTYRAC 3 cut(s) 82, 109, 143
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 2 cut(s) 139, 587
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 3 cut(s) 82, 109, 143
Hpy188I TCNGA 1 cut(s) 592
Hpy188III TCNNGA 3 cut(s) 133, 458, 740
Hpy8I GTNNAC 3 cut(s) 82, 109, 143
HpyAV CCTTC 3 cut(s) 80, 628, 748
HpyCH4III ACNGT 1 cut(s) 621
HpyCH4IV ACGT 2 cut(s) 343, 471
HpyCH4V TGCA 4 cut(s) 208, 212, 477, 731
HpyF10VI GCNNNNNNNGC 4 cut(s) 401, 410, 638, 664
HpyF3I CTNAG 2 cut(s) 254, 329
HpySE526I ACGT 2 cut(s) 343, 471
Hsp92II CATG 2 cut(s) 212, 226
Kzo9I GATC 3 cut(s) 129, 271, 464
LmnI GCTCC 3 cut(s) 325, 520, 742
LpnPI CCDG 5 cut(s) 134, 405, 453, 471, 702
LweI GCATC 4 cut(s) 397, 520, 559, 628
MaeI CTAG 1 cut(s) 68
MaeII ACGT 2 cut(s) 343, 471
MaeIII GTNAC 1 cut(s) 428
MalI GATC 3 cut(s) 131, 273, 466
MboI GATC 3 cut(s) 129, 271, 464
MboII GAAGA 3 cut(s) 148, 370, 373
MfeI CAATTG 1 cut(s) 536
MflI RGATCY 1 cut(s) 464
MhlI GDGCHC 1 cut(s) 415
MlsI TGGCCA 1 cut(s) 439
MluCI AATT 6 cut(s) 23, 503, 536, 681, 687, 709
MluNI TGGCCA 1 cut(s) 439
MlyI GAGTC 1 cut(s) 148
MmeI TCCRAC 2 cut(s) 9, 492
MnlI CCTC 6 cut(s) 50, 158, 178, 249, 324, 340
Mox20I TGGCCA 1 cut(s) 439
MscI TGGCCA 1 cut(s) 439
MseI TTAA 2 cut(s) 308, 623
MslI CAYNNNNRTG 1 cut(s) 607
Msp20I TGGCCA 1 cut(s) 439
MspA1I CMGCKG 1 cut(s) 395
MunI CAATTG 1 cut(s) 536
Mva1269I GAATGC 2 cut(s) 60, 301
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 4 cut(s) 401, 410, 638, 664
NdeII GATC 3 cut(s) 129, 271, 464
NlaIII CATG 2 cut(s) 212, 226
NruI TCGCGA 1 cut(s) 134
NspI RCATGY 1 cut(s) 212
PaeI GCATGC 1 cut(s) 212
PctI GAATGC 2 cut(s) 60, 301
PfeI GAWTC 1 cut(s) 587
Pfl23II CGTACG 1 cut(s) 519
PflMI CCANNNNNTGG 1 cut(s) 175
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
Ppu21I YACGTR 1 cut(s) 344
PsiI TTATAA 1 cut(s) 686
PspLI CGTACG 1 cut(s) 519
PspPI GGNCC 1 cut(s) 187
PsuI RGATCY 1 cut(s) 464
PvuII CAGCTG 1 cut(s) 395
RruI TCGCGA 1 cut(s) 134
RsaI GTAC 2 cut(s) 252, 521
RsaNI GTAC 2 cut(s) 251, 520
RseI CAYNNNNRTG 1 cut(s) 607
SalI GTCGAC 1 cut(s) 141
SaqAI TTAA 2 cut(s) 308, 623
Sau3AI GATC 3 cut(s) 129, 271, 464
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 1 cut(s) 148
SduI GDGCHC 1 cut(s) 415
SfaNI GCATC 4 cut(s) 397, 520, 559, 628
SmiMI CAYNNNNRTG 1 cut(s) 607
SphI GCATGC 1 cut(s) 212
Sse9I AATT 6 cut(s) 23, 503, 536, 681, 687, 709
SsiI CCGC 1 cut(s) 527
SspI AATATT 2 cut(s) 218, 421
SspMI CTAG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 621
TaiI ACGT 2 cut(s) 346, 474
TaqI TCGA 1 cut(s) 142
TasI AATT 6 cut(s) 23, 503, 536, 681, 687, 709
TatI WGTACW 1 cut(s) 250
TfiI GAWTC 1 cut(s) 587
Tru1I TTAA 2 cut(s) 308, 623
Tru9I TTAA 2 cut(s) 308, 623
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 211, 216
TspGWI ACGGA 2 cut(s) 30, 507
TspRI CASTG 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 175
XapI RAATTY 1 cut(s) 709
XceI RCATGY 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 142
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.