Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014419.1

Orthogroup ID

OG0008863

Physical Location & Seq

Genomic Coordinates Forward (+)

5624 .. 7503

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014419.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

atggggatagggaagggaagcgaattgttggatgactttggagacaacgcagtaataagaggcatgcgcctcgacagactggccagtgagggcattgcgagagtaggggttgatgccactccctggcttgtgatcgttcaccgtacacttgaggatcaccaaaagaaaaattatgaactgcatgcaaaacttttcatggagtattgcggtgagaggatttatgtactaaagcggaatggacttataccgactatggtctttgatggaaatgctacaccattaaagacccacatatcgttggtaattcatatctccaatgcttctaatgctagaaaggagctgaggaaggcgatagaaagtgaaaacaacaacaacaacaataacaaaaccaatgagataagggatcctgatagtgatatcagtggcagtgatagtgatagtgaggttaatgtccacagtgataatgagcccgtagacaataagttacggtacaagtggccaaaagatagatacattcctaacagatccagagtagtaaagtggttgaccgaggagatggaagtaaagttctttgtggctccttatgaagccgatgcccaattgacacacttggcaagcaagaaattaatagatgccgtcatcactgaggattcagaccttatagcatttggatgtaaaaaaattatctataacattaattttgaaaaagaaacgtgtgattactactcatttgatcgtttaaaagaagtgaacattgactacaaagacttttcacaaaaaaagcttctggaaatggcaataatgataggctgcgattatttaccaaatttggcgagcataggcattggtaaagcttacgatgagataatggagcagaaacattatgagaatgtaattacctggtcgaaaaaaaagcttgtgcttagaactggggtcgggaataaacaagatacaatattgaggtcagagattctacaatatttccaaagagcaattctggcgttcacatatcaacaagtttatagtcccgaatctaaaacttgtgaacgcttatctcatatgagatataataagctacagagtgacgtggtggcagacatacccaagatgttaggaccacgtttaaaggacggatctgttcataatattgcaatgggtagcagaccttcgaagctcgagataattgatgtagataatcggcctgaagaatatcccggacagatactagctgaaatccttggaagcacctttttctttttctttctctttccttcgtccttggcttgtgttcgcggagagcgagctggagccggcgaggagctcggtgaagagggcgttcaaatctacttcttcttcatcccatatgcaattccccttagaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

461

Amino Acids

52.72

Weight (kDa)

6.01

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36910 FvH4_6g02530 FvH4_7g04680
rosa_laevigata	RLG00000009071 RLG00000026067
rosa_multiflora	Rmu_sc0001753.1_g000028 Rmu_sc0005139.1_g000010 Rmu_sc0014419.1_g000003 Rmu_sc0014419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276940 Rroxscaffold_5G00387150 Rroxscaffold_7G00212230
rosa_rugosa	Rorug05G0542500
rosa_samantha	Rh1BG428500 Rh1CG440900 Rh1DG461300 Rh4BG445000 Rh4BG445100 Rh4CG462300 Rh4CG462400 Rh6CG048900 Rh6DG044600
rosa_wichuraiana	Rw4G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	474
AccII	CGCG	1 cut(s)	1293
AciI	CCGC	3 cut(s)	207, 232, 1293
AclWI	GGATC	5 cut(s)	162, 398, 411, 519, 1141
AcoI	YGGCCR	2 cut(s)	81, 497
AcsI	RAATTY	1 cut(s)	826
AcuI	CTGAAG	1 cut(s)	1224
AfaI	GTAC	3 cut(s)	145, 225, 491
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflIII	ACRYGT	1 cut(s)	713
AgsI	TTSAA	2 cut(s)	704, 1340
AjiI	CACGTC	1 cut(s)	1087
AjnI	CCWGG	2 cut(s)	122, 899
AjuI	GAANNNNNNNTTGG	2 cut(s)	978, 1010
AloI	GAACNNNNNNTCC	2 cut(s)	551, 583
AluBI	AGCT	9 cut(s)	340, 784, 854, 916, 1075, 1174, 1229, 1304, 1321
AluI	AGCT	9 cut(s)	340, 784, 854, 916, 1075, 1174, 1229, 1304, 1321
Alw21I	GWGCWC	1 cut(s)	1323
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	5 cut(s)	162, 398, 411, 519, 1141
Ama87I	CYCGRG	1 cut(s)	1175
AoxI	GGCC	3 cut(s)	81, 497, 1199
ApeKI	GCWGC	1 cut(s)	810
ApoI	RAATTY	1 cut(s)	826
AseI	ATTAAT	2 cut(s)	626, 696
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	1115
AsuC2I	CCSGG	1 cut(s)	1215
AsuHPI	GGTGA	4 cut(s)	131, 149, 221, 1337
AsuII	TTCGAA	1 cut(s)	1169
AvaI	CYCGRG	1 cut(s)	1175
AvaII	GGWCC	1 cut(s)	1115
BalI	TGGCCA	2 cut(s)	83, 499
BamHI	GGATCC	1 cut(s)	403
BanII	GRGCYC	2 cut(s)	471, 1323
BarI	GAAGNNNNNNTAC	2 cut(s)	1150, 1182
Bbv12I	GWGCWC	1 cut(s)	1323
BbvCI	CCTCAGC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	797
BccI	CCATC	2 cut(s)	257, 550
BceAI	ACGGC	1 cut(s)	620
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	2 cut(s)	124, 901
BcnI	CCSGG	1 cut(s)	1215
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	2 cut(s)	330, 1226
BfmI	CTRYAG	1 cut(s)	1076
BisI	GCNGC	1 cut(s)	811
BlsI	GCNGC	1 cut(s)	812
Bme1390I	CCNGG	3 cut(s)	124, 901, 1215
Bme18I	GGWCC	1 cut(s)	1115
BmeT110I	CYCGRG	1 cut(s)	1175
BmgBI	CACGTC	1 cut(s)	1087
BmgT120I	GGNCC	1 cut(s)	1115
BmiI	GGNNCC	3 cut(s)	405, 579, 1309
BmrFI	CCNGG	3 cut(s)	124, 901, 1215
BmrI	ACTGGG	1 cut(s)	939
BmsI	GCATC	3 cut(s)	103, 583, 622
BmuI	ACTGGG	1 cut(s)	939
BoxI	GACNNNNGTC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	1326
Bpu10I	CCTNAGC	1 cut(s)	341
Bpu14I	TTCGAA	1 cut(s)	1169
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	1215
BsaJI	CCNNGG	4 cut(s)	122, 549, 1237, 1278
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	1310
Bse1I	ACTGG	3 cut(s)	84, 84, 934
Bse3DI	GCAATG	2 cut(s)	93, 1158
BseBI	CCWGG	2 cut(s)	124, 901
BseDI	CCNNGG	4 cut(s)	122, 549, 1237, 1278
BseGI	GGATG	3 cut(s)	37, 677, 1356
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMI	GCAATG	2 cut(s)	93, 1158
BseMII	CTCAG	2 cut(s)	332, 636
BseNI	ACTGG	3 cut(s)	84, 84, 934
BseRI	GAGGAG	2 cut(s)	566, 1331
BseXI	GCAGC	1 cut(s)	797
Bsh1236I	CGCG	1 cut(s)	1293
BshFI	GGCC	3 cut(s)	83, 499, 1201
BsiHKAI	GWGCWC	1 cut(s)	1323
BsiHKCI	CYCGRG	1 cut(s)	1175
BsiSI	CCGG	2 cut(s)	1215, 1311
BslFI	GGGAC	1 cut(s)	1011
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	1011
BsnI	GGCC	3 cut(s)	83, 499, 1201
BsoBI	CYCGRG	1 cut(s)	1175
Bsp119I	TTCGAA	1 cut(s)	1169
Bsp1286I	GDGCHC	2 cut(s)	471, 1323
Bsp143I	GATC	6 cut(s)	132, 154, 403, 524, 733, 1133
BspACI	CCGC	3 cut(s)	207, 232, 1293
BspANI	GGCC	3 cut(s)	83, 499, 1201
BspCNI	CTCAG	2 cut(s)	333, 637
BspFNI	CGCG	1 cut(s)	1293
BspLI	GGNNCC	3 cut(s)	405, 579, 1309
BspPI	GGATC	5 cut(s)	162, 398, 411, 519, 1141
BspT104I	TTCGAA	1 cut(s)	1169
BsrDI	GCAATG	2 cut(s)	93, 1158
BsrFI	RCCGGY	1 cut(s)	1310
BsrI	ACTGG	3 cut(s)	84, 84, 934
BssAI	RCCGGY	1 cut(s)	1310
BssECI	CCNNGG	4 cut(s)	122, 549, 1237, 1278
BssMI	GATC	6 cut(s)	132, 154, 403, 524, 733, 1133
BssT1I	CCWWGG	2 cut(s)	1237, 1278
Bst2UI	CCWGG	2 cut(s)	124, 901
Bst4CI	ACNGT	3 cut(s)	143, 458, 489
Bst6I	CTCTTC	1 cut(s)	1323
BstBI	TTCGAA	1 cut(s)	1169
BstC8I	GCNNGC	6 cut(s)	65, 183, 616, 835, 1302, 1312
BstDEI	CTNAG	4 cut(s)	341, 645, 923, 1376
BstF5I	GGATG	3 cut(s)	37, 677, 1356
BstFNI	CGCG	1 cut(s)	1293
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	6 cut(s)	135, 157, 406, 527, 736, 1136
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	6 cut(s)	132, 154, 403, 524, 733, 1133
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 998
BstNI	CCWGG	2 cut(s)	124, 901
BstNSI	RCATGY	2 cut(s)	67, 185
BstPAI	GACNNNNGTC	1 cut(s)	254
BstSCI	CCNGG	3 cut(s)	122, 899, 1213
BstSFI	CTRYAG	1 cut(s)	1076
BstUI	CGCG	1 cut(s)	1293
BstV1I	GCAGC	1 cut(s)	797
BstX2I	RGATCY	3 cut(s)	403, 524, 1133
BstYI	RGATCY	3 cut(s)	403, 524, 1133
BsuRI	GGCC	3 cut(s)	83, 499, 1201
BtrI	CACGTC	1 cut(s)	1087
BtsCI	GGATG	3 cut(s)	37, 677, 1356
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	5 cut(s)	91, 427, 433, 463, 642
Cac8I	GCNNGC	6 cut(s)	65, 183, 616, 835, 1302, 1312
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	1310
Cfr13I	GGNCC	1 cut(s)	1115
CsiI	ACCWGGT	1 cut(s)	899
Csp6I	GTAC	3 cut(s)	144, 224, 490
CviAII	CATG	3 cut(s)	64, 182, 196
CviQI	GTAC	3 cut(s)	144, 224, 490
DdeI	CTNAG	4 cut(s)	341, 645, 923, 1376
DpnI	GATC	6 cut(s)	134, 156, 405, 526, 735, 1135
DpnII	GATC	6 cut(s)	132, 154, 403, 524, 733, 1133
DraI	TTTAAA	2 cut(s)	741, 1125
EaeI	YGGCCR	2 cut(s)	81, 497
Eam1104I	CTCTTC	1 cut(s)	1323
EarI	CTCTTC	1 cut(s)	1323
Ecl136II	GAGCTC	1 cut(s)	1321
Eco130I	CCWWGG	2 cut(s)	1237, 1278
Eco24I	GRGCYC	2 cut(s)	471, 1323
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	1115
Eco53kI	GAGCTC	1 cut(s)	1321
Eco57I	CTGAAG	1 cut(s)	1224
Eco88I	CYCGRG	1 cut(s)	1175
EcoICRI	GAGCTC	1 cut(s)	1321
EcoRII	CCWGG	2 cut(s)	122, 899
EcoRV	GATATC	1 cut(s)	418
EcoT14I	CCWWGG	2 cut(s)	1237, 1278
EcoT38I	GRGCYC	2 cut(s)	471, 1323
ErhI	CCWWGG	2 cut(s)	1237, 1278
FaeI	CATG	3 cut(s)	67, 185, 199
FaqI	GGGAC	1 cut(s)	1011
FatI	CATG	3 cut(s)	63, 181, 195
FauNDI	CATATG	2 cut(s)	1059, 1363
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	1 cut(s)	811
FokI	GGATG	3 cut(s)	44, 684, 1343
FriOI	GRGCYC	2 cut(s)	471, 1323
Fsp4HI	GCNGC	1 cut(s)	811
FspBI	CTAG	2 cut(s)	330, 1226
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	811
GsuI	CTGGAG	1 cut(s)	1326
HaeIII	GGCC	3 cut(s)	83, 499, 1201
HapII	CCGG	2 cut(s)	1215, 1311
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	3 cut(s)	67, 185, 199
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HindIII	AAGCTT	3 cut(s)	782, 852, 914
HinfI	GANTC	3 cut(s)	650, 970, 1031
HpaII	CCGG	2 cut(s)	1215, 1311
HphI	GGTGA	4 cut(s)	131, 149, 221, 1337
Hpy166II	GTNNAC	8 cut(s)	139, 146, 454, 475, 546, 751, 1005, 1046
Hpy188I	TCNGA	2 cut(s)	655, 967
Hpy188III	TCNNGA	6 cut(s)	407, 528, 788, 937, 1028, 1177
Hpy8I	GTNNAC	8 cut(s)	139, 146, 454, 475, 546, 751, 1005, 1046
HpyAV	CCTTC	4 cut(s)	7, 340, 1176, 1281
HpyCH4III	ACNGT	3 cut(s)	143, 458, 489
HpyCH4IV	ACGT	3 cut(s)	713, 1086, 1120
HpyCH4V	TGCA	4 cut(s)	181, 185, 1151, 1367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 998
HpyF3I	CTNAG	4 cut(s)	341, 645, 923, 1376
HpySE526I	ACGT	3 cut(s)	713, 1086, 1120
Hsp92II	CATG	3 cut(s)	67, 185, 199
HspAI	GCGC	1 cut(s)	67
KroI	GCCGGC	1 cut(s)	1310
KroNI	GCCGGC	1 cut(s)	1312
Kzo9I	GATC	6 cut(s)	132, 154, 403, 524, 733, 1133
LmnI	GCTCC	5 cut(s)	337, 583, 871, 1307, 1318
Lsp1109I	GCAGC	1 cut(s)	797
LweI	GCATC	3 cut(s)	103, 583, 622
MabI	ACCWGGT	1 cut(s)	899
MaeI	CTAG	2 cut(s)	330, 1226
MaeII	ACGT	3 cut(s)	713, 1086, 1120
MaeIII	GTNAC	2 cut(s)	483, 1082
MalI	GATC	6 cut(s)	134, 156, 405, 526, 735, 1135
MboI	GATC	6 cut(s)	132, 154, 403, 524, 733, 1133
MboII	GAAGA	4 cut(s)	1217, 1340, 1342, 1345
MfeI	CAATTG	1 cut(s)	599
MflI	RGATCY	3 cut(s)	403, 524, 1133
MhlI	GDGCHC	2 cut(s)	471, 1323
MlsI	TGGCCA	2 cut(s)	83, 499
MluNI	TGGCCA	2 cut(s)	83, 499
MmeI	TCCRAC	1 cut(s)	9
Mox20I	TGGCCA	2 cut(s)	83, 499
MroNI	GCCGGC	1 cut(s)	1310
MscI	TGGCCA	2 cut(s)	83, 499
MseI	TTAA	6 cut(s)	281, 447, 626, 696, 740, 1124
MslI	CAYNNNNRTG	1 cut(s)	670
Msp20I	TGGCCA	2 cut(s)	83, 499
MspI	CCGG	2 cut(s)	1215, 1311
MspR9I	CCNGG	3 cut(s)	124, 901, 1215
MunI	CAATTG	1 cut(s)	599
MvaI	CCWGG	2 cut(s)	124, 901
MvnI	CGCG	1 cut(s)	1293
MwoI	GCNNNNNNNGC	2 cut(s)	326, 998
NaeI	GCCGGC	1 cut(s)	1312
NciI	CCSGG	1 cut(s)	1215
NdeI	CATATG	2 cut(s)	1059, 1363
NdeII	GATC	6 cut(s)	132, 154, 403, 524, 733, 1133
NgoMIV	GCCGGC	1 cut(s)	1310
NlaIII	CATG	3 cut(s)	67, 185, 199
NlaIV	GGNNCC	3 cut(s)	405, 579, 1309
NmuCI	GTSAC	1 cut(s)	1082
NspI	RCATGY	2 cut(s)	67, 185
NspV	TTCGAA	1 cut(s)	1169
PaeI	GCATGC	2 cut(s)	67, 185
PaeR7I	CTCGAG	1 cut(s)	1175
PcsI	WCGNNNNNNNCGW	1 cut(s)	1297
PdiI	GCCGGC	1 cut(s)	1312
PfeI	GAWTC	3 cut(s)	650, 970, 1031
PflMI	CCANNNNNTGG	1 cut(s)	123
PfoI	TCCNGGA	1 cut(s)	1213
PkrI	GCNGC	1 cut(s)	812
PshAI	GACNNNNGTC	1 cut(s)	254
PshBI	ATTAAT	2 cut(s)	626, 696
Psp124BI	GAGCTC	1 cut(s)	1323
Psp6I	CCWGG	2 cut(s)	122, 899
PspGI	CCWGG	2 cut(s)	122, 899
PspN4I	GGNNCC	3 cut(s)	405, 579, 1309
PspPI	GGNCC	1 cut(s)	1115
PsrI	GAACNNNNNNTAC	2 cut(s)	743, 775
PsuI	RGATCY	3 cut(s)	403, 524, 1133
RsaI	GTAC	3 cut(s)	145, 225, 491
RsaNI	GTAC	3 cut(s)	144, 224, 490
RseI	CAYNNNNRTG	1 cut(s)	670
SacI	GAGCTC	1 cut(s)	1323
SaqAI	TTAA	6 cut(s)	281, 447, 626, 696, 740, 1124
SatI	GCNGC	1 cut(s)	811
Sau3AI	GATC	6 cut(s)	132, 154, 403, 524, 733, 1133
Sau96I	GGNCC	1 cut(s)	1115
ScrFI	CCNGG	3 cut(s)	124, 901, 1215
SduI	GDGCHC	2 cut(s)	471, 1323
SexAI	ACCWGGT	1 cut(s)	899
SfaNI	GCATC	3 cut(s)	103, 583, 622
SfcI	CTRYAG	1 cut(s)	1076
Sfr274I	CTCGAG	1 cut(s)	1175
SfuI	TTCGAA	1 cut(s)	1169
SinI	GGWCC	1 cut(s)	1115
SlaI	CTCGAG	1 cut(s)	1175
SmiMI	CAYNNNNRTG	1 cut(s)	670
SmlI	CTYRAG	2 cut(s)	149, 1175
SmoI	CTYRAG	2 cut(s)	149, 1175
SphI	GCATGC	2 cut(s)	67, 185
SsiI	CCGC	3 cut(s)	207, 232, 1293
SspI	AATATT	3 cut(s)	957, 980, 1147
SspMI	CTAG	2 cut(s)	330, 1226
SstI	GAGCTC	1 cut(s)	1323
StyD4I	CCNGG	3 cut(s)	122, 899, 1213
StyI	CCWWGG	2 cut(s)	1237, 1278
TaaI	ACNGT	3 cut(s)	143, 458, 489
TaiI	ACGT	3 cut(s)	716, 1089, 1123
TaqI	TCGA	4 cut(s)	72, 905, 1169, 1176
TaqII	GACCGA	1 cut(s)	563
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	3 cut(s)	650, 970, 1031
Tru1I	TTAA	6 cut(s)	281, 447, 626, 696, 740, 1124
Tru9I	TTAA	6 cut(s)	281, 447, 626, 696, 740, 1124
TscAI	CASTG	5 cut(s)	91, 427, 433, 463, 649
TseFI	GTSAC	1 cut(s)	1082
TseI	GCWGC	1 cut(s)	810
Tsp45I	GTSAC	1 cut(s)	1082
TspDTI	ATGAA	6 cut(s)	184, 189, 296, 600, 1130, 1345
TspGWI	ACGGA	1 cut(s)	1146
TspRI	CASTG	5 cut(s)	91, 427, 433, 463, 649
Van91I	CCANNNNNTGG	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	1115
VspI	ATTAAT	2 cut(s)	626, 696
XapI	RAATTY	1 cut(s)	826
XceI	RCATGY	2 cut(s)	67, 185
XhoI	CTCGAG	1 cut(s)	1175
XmiI	GTMKAC	1 cut(s)	474
XspI	CTAG	2 cut(s)	330, 1226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.