Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005139.1

Orthogroup ID

OG0008863

Physical Location & Seq

Genomic Coordinates Reverse (-)

36560 .. 38325

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005139.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgaagatggggataggaaagggaagcgaattgttgggtgactttggagacaacgcagtaataagaggcatgcgcctcgacagactgagcagtgagggcattacgagagtaggggttgatgctactccctggcttgtgaccgttcaggcgttcaccatacacttgaggatcaccaaaagaaaaattatggactgtatgcatgcaaaacttttcatggagtattgcggtaagaggattaatgtactaaagccgaatggacttataccgactatggtctttgatggaaatgctgcaccattaaagacccacataaaggagctgaggaaagcgattagtgatgaagacaacaacaacatcaatacgaatgagatacgggatcctggtagtgatatcagtgacagtgatagtgatgttaatgtgaacagtggtagtgatcccgtagacaataagtcaccctataagtggccaaaacatagatacattcctgaaagatccgaagtagtcaagtggttgaccgaggagatggatgtaaagttctttgtggctccttatgaagccgatgcccaattgacacacttggcaagcaagaaaataatagacgccgtcatcaccaatgactcagaccttatagcattcggatgtaaaaaagatgtcgtggtgagaaacataaccaggttgttaggaccacgtttgaaggacgaatctgttcataatattgcaatgggtaatagaccttcgaagctcgaggacattgatgtagataatcggcctgaacagtatcatggaaagacgcaaggctcgtttaccaagttttctcatcagattgcaatgccacgtgtcacaaatctggaggttcagttagcaaggttgttagaagaaatgtgtagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

296

Amino Acids

33.29

Weight (kDa)

6.72

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36910 FvH4_6g02530 FvH4_7g04680
rosa_laevigata	RLG00000009071 RLG00000026067
rosa_multiflora	Rmu_sc0001753.1_g000028 Rmu_sc0005139.1_g000010 Rmu_sc0014419.1_g000003 Rmu_sc0014419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276940 Rroxscaffold_5G00387150 Rroxscaffold_7G00212230
rosa_rugosa	Rorug05G0542500
rosa_samantha	Rh1BG428500 Rh1CG440900 Rh1DG461300 Rh4BG445000 Rh4BG445100 Rh4CG462300 Rh4CG462400 Rh6CG048900 Rh6DG044600
rosa_wichuraiana	Rw4G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	441
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	5 cut(s)	176, 371, 384, 428, 486
AcoI	YGGCCR	1 cut(s)	464
AcvI	CACGTG	1 cut(s)	836
AcyI	GRCGYC	1 cut(s)	600
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	313, 462
AflIII	ACRYGT	1 cut(s)	835
AgsI	TTSAA	1 cut(s)	694
AhdI	GACNNNNNGTC	1 cut(s)	448
AjnI	CCWGG	3 cut(s)	128, 379, 671
AloI	GAACNNNNNNTCC	2 cut(s)	518, 550
AluBI	AGCT	3 cut(s)	319, 742, 888
AluI	AGCT	3 cut(s)	319, 742, 888
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	5 cut(s)	176, 371, 384, 428, 486
Ama87I	CYCGRG	1 cut(s)	743
AoxI	GGCC	2 cut(s)	464, 767
ApeKI	GCWGC	1 cut(s)	290
AseI	ATTAAT	1 cut(s)	237
Asp700I	GAANNNNTTC	1 cut(s)	705
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	683
AsuHPI	GGTGA	6 cut(s)	50, 145, 163, 444, 601, 670
AsuII	TTCGAA	1 cut(s)	737
AvaI	CYCGRG	1 cut(s)	743
AvaII	GGWCC	1 cut(s)	683
BalI	TGGCCA	1 cut(s)	466
BamHI	GGATCC	1 cut(s)	376
BarI	GAAGNNNNNNTAC	2 cut(s)	718, 750
BbrPI	CACGTG	1 cut(s)	836
BbsI	GAAGAC	1 cut(s)	348
BbvCI	CCTCAGC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	2 cut(s)	275, 517
BceAI	ACGGC	1 cut(s)	587
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	3 cut(s)	130, 381, 673
BcoDI	GTCTC	1 cut(s)	42
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	3 cut(s)	130, 381, 673
Bme18I	GGWCC	1 cut(s)	683
BmeRI	GACNNNNNGTC	1 cut(s)	448
BmeT110I	CYCGRG	1 cut(s)	743
BmgT120I	GGNCC	1 cut(s)	683
BmiI	GGNNCC	2 cut(s)	378, 546
BmrFI	CCNGG	3 cut(s)	130, 381, 673
BmsI	GCATC	2 cut(s)	109, 550
BoxI	GACNNNNGTC	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	869
Bpu10I	CCTNAGC	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	737
BpuEI	CTTGAG	1 cut(s)	184
BsaAI	YACGTR	1 cut(s)	836
BsaHI	GRCGYC	1 cut(s)	600
BsaJI	CCNNGG	2 cut(s)	128, 516
BsaXI	ACNNNNNCTCC	2 cut(s)	842, 872
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 462
Bse3DI	GCAATG	2 cut(s)	726, 834
BseBI	CCWGG	3 cut(s)	130, 381, 673
BseDI	CCNNGG	2 cut(s)	128, 516
BseGI	GGATG	2 cut(s)	532, 644
BseLI	CCNNNNNNNGG	2 cut(s)	313, 462
BseMI	GCAATG	2 cut(s)	726, 834
BseMII	CTCAG	3 cut(s)	77, 311, 633
BseRI	GAGGAG	1 cut(s)	533
BseXI	GCAGC	1 cut(s)	277
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	466, 769
BsiHKCI	CYCGRG	1 cut(s)	743
BslI	CCNNNNNNNGG	2 cut(s)	313, 462
BsmAI	GTCTC	1 cut(s)	42
BsmI	GAATGC	1 cut(s)	632
BsnI	GGCC	2 cut(s)	466, 769
BsoBI	CYCGRG	1 cut(s)	743
Bsp119I	TTCGAA	1 cut(s)	737
Bsp143I	GATC	4 cut(s)	168, 376, 433, 491
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	2 cut(s)	466, 769
BspCNI	CTCAG	3 cut(s)	78, 312, 632
BspLI	GGNNCC	2 cut(s)	378, 546
BspPI	GGATC	5 cut(s)	176, 371, 384, 428, 486
BspT104I	TTCGAA	1 cut(s)	737
BsrDI	GCAATG	2 cut(s)	726, 834
BssECI	CCNNGG	2 cut(s)	128, 516
BssMI	GATC	4 cut(s)	168, 376, 433, 491
BssNI	GRCGYC	1 cut(s)	600
Bst2UI	CCWGG	3 cut(s)	130, 381, 673
Bst4CI	ACNGT	5 cut(s)	142, 194, 401, 425, 777
BstACI	GRCGYC	1 cut(s)	600
BstBAI	YACGTR	1 cut(s)	836
BstBI	TTCGAA	1 cut(s)	737
BstC8I	GCNNGC	3 cut(s)	71, 201, 583
BstDEI	CTNAG	3 cut(s)	86, 320, 619
BstF5I	GGATG	2 cut(s)	532, 644
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	4 cut(s)	171, 379, 436, 494
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	4 cut(s)	168, 376, 433, 491
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	3 cut(s)	130, 381, 673
BstNSI	RCATGY	2 cut(s)	73, 203
BstPAI	GACNNNNGTC	1 cut(s)	272
BstSCI	CCNGG	3 cut(s)	128, 379, 671
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	2 cut(s)	376, 491
BstYI	RGATCY	2 cut(s)	376, 491
BsuRI	GGCC	2 cut(s)	466, 769
BtsCI	GGATG	2 cut(s)	532, 644
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	4 cut(s)	97, 400, 406, 430
Cac8I	GCNNGC	3 cut(s)	71, 201, 583
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	683
CseI	GACGC	2 cut(s)	608, 799
CsiI	ACCWGGT	1 cut(s)	671
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	4 cut(s)	70, 200, 214, 782
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	3 cut(s)	86, 320, 619
DpnI	GATC	4 cut(s)	170, 378, 435, 493
DpnII	GATC	4 cut(s)	168, 376, 433, 491
DriI	GACNNNNNGTC	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	464
Eam1105I	GACNNNNNGTC	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	683
Eco72I	CACGTG	1 cut(s)	836
Eco88I	CYCGRG	1 cut(s)	743
EcoRII	CCWGG	3 cut(s)	128, 379, 671
EcoRV	GATATC	1 cut(s)	391
EcoT22I	ATGCAT	1 cut(s)	201
FaeI	CATG	4 cut(s)	73, 203, 217, 785
FatI	CATG	4 cut(s)	69, 199, 213, 781
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	2 cut(s)	539, 651
Fsp4HI	GCNGC	1 cut(s)	291
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	869
HaeIII	GGCC	2 cut(s)	466, 769
HgaI	GACGC	2 cut(s)	608, 799
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	600
Hin1II	CATG	4 cut(s)	73, 203, 217, 785
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	2 cut(s)	617, 701
HphI	GGTGA	6 cut(s)	50, 145, 163, 444, 601, 670
Hpy166II	GTNNAC	5 cut(s)	153, 421, 442, 513, 804
Hpy188I	TCNGA	4 cut(s)	496, 622, 638, 822
Hpy188III	TCNNGA	2 cut(s)	485, 848
Hpy8I	GTNNAC	5 cut(s)	153, 421, 442, 513, 804
HpyAV	CCTTC	2 cut(s)	688, 744
HpyCH4III	ACNGT	5 cut(s)	142, 194, 401, 425, 777
HpyCH4IV	ACGT	2 cut(s)	688, 835
HpyCH4V	TGCA	5 cut(s)	199, 203, 293, 719, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	3 cut(s)	86, 320, 619
HpySE526I	ACGT	2 cut(s)	688, 835
Hsp92I	GRCGYC	1 cut(s)	600
Hsp92II	CATG	4 cut(s)	73, 203, 217, 785
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	168, 376, 433, 491
LmnI	GCTCC	2 cut(s)	316, 550
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	2 cut(s)	109, 550
MabI	ACCWGGT	1 cut(s)	671
MaeII	ACGT	2 cut(s)	688, 835
MaeIII	GTNAC	5 cut(s)	38, 136, 395, 450, 838
MalI	GATC	4 cut(s)	170, 378, 435, 493
MboI	GATC	4 cut(s)	168, 376, 433, 491
MboII	GAAGA	3 cut(s)	16, 353, 887
MfeI	CAATTG	1 cut(s)	566
MflI	RGATCY	2 cut(s)	376, 491
MlsI	TGGCCA	1 cut(s)	466
MluCI	AATT	3 cut(s)	29, 183, 566
MluNI	TGGCCA	1 cut(s)	466
MlyI	GAGTC	1 cut(s)	611
MnlI	CCTC	9 cut(s)	59, 86, 88, 159, 225, 315, 511, 739, 844
Mox20I	TGGCCA	1 cut(s)	466
Mph1103I	ATGCAT	1 cut(s)	201
MroXI	GAANNNNTTC	1 cut(s)	705
MscI	TGGCCA	1 cut(s)	466
MseI	TTAA	3 cut(s)	237, 299, 414
MslI	CAYNNNNRTG	1 cut(s)	637
Msp20I	TGGCCA	1 cut(s)	466
MspR9I	CCNGG	3 cut(s)	130, 381, 673
MunI	CAATTG	1 cut(s)	566
Mva1269I	GAATGC	1 cut(s)	632
MvaI	CCWGG	3 cut(s)	130, 381, 673
MwoI	GCNNNNNNNGC	1 cut(s)	96
NdeII	GATC	4 cut(s)	168, 376, 433, 491
NlaIII	CATG	4 cut(s)	73, 203, 217, 785
NlaIV	GGNNCC	2 cut(s)	378, 546
NmuCI	GTSAC	5 cut(s)	38, 136, 395, 450, 838
NsiI	ATGCAT	1 cut(s)	201
NspI	RCATGY	2 cut(s)	73, 203
NspV	TTCGAA	1 cut(s)	737
PaeI	GCATGC	2 cut(s)	73, 203
PaeR7I	CTCGAG	1 cut(s)	743
PcsI	WCGNNNNNNNCGW	1 cut(s)	797
PctI	GAATGC	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	1 cut(s)	701
PflFI	GACNNNGTC	1 cut(s)	602
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	1 cut(s)	611
PmaCI	CACGTG	1 cut(s)	836
PmlI	CACGTG	1 cut(s)	836
PpsI	GAGTC	1 cut(s)	611
Ppu21I	YACGTR	1 cut(s)	836
PshAI	GACNNNNGTC	1 cut(s)	272
PshBI	ATTAAT	1 cut(s)	237
Psp6I	CCWGG	3 cut(s)	128, 379, 671
PspCI	CACGTG	1 cut(s)	836
PspGI	CCWGG	3 cut(s)	128, 379, 671
PspN4I	GGNNCC	2 cut(s)	378, 546
PspPI	GGNCC	1 cut(s)	683
PspXI	VCTCGAGB	1 cut(s)	743
PsuI	RGATCY	2 cut(s)	376, 491
PsyI	GACNNNGTC	1 cut(s)	602
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	637
SaqAI	TTAA	3 cut(s)	237, 299, 414
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	4 cut(s)	168, 376, 433, 491
Sau96I	GGNCC	1 cut(s)	683
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	3 cut(s)	130, 381, 673
SexAI	ACCWGGT	1 cut(s)	671
SfaNI	GCATC	2 cut(s)	109, 550
Sfr274I	CTCGAG	1 cut(s)	743
SfuI	TTCGAA	1 cut(s)	737
SinI	GGWCC	1 cut(s)	683
SlaI	CTCGAG	1 cut(s)	743
SmiMI	CAYNNNNRTG	1 cut(s)	637
SmlI	CTYRAG	2 cut(s)	163, 743
SmoI	CTYRAG	2 cut(s)	163, 743
SphI	GCATGC	2 cut(s)	73, 203
Sse9I	AATT	3 cut(s)	29, 183, 566
SsiI	CCGC	1 cut(s)	225
SspI	AATATT	1 cut(s)	715
StyD4I	CCNGG	3 cut(s)	128, 379, 671
TaaI	ACNGT	5 cut(s)	142, 194, 401, 425, 777
TaiI	ACGT	2 cut(s)	691, 838
TaqI	TCGA	3 cut(s)	78, 737, 744
TaqII	GACCGA	1 cut(s)	530
TasI	AATT	3 cut(s)	29, 183, 566
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	701
Tru1I	TTAA	3 cut(s)	237, 299, 414
Tru9I	TTAA	3 cut(s)	237, 299, 414
TscAI	CASTG	4 cut(s)	97, 400, 406, 430
TseFI	GTSAC	5 cut(s)	38, 136, 395, 450, 838
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	5 cut(s)	38, 136, 395, 450, 838
TspDTI	ATGAA	5 cut(s)	17, 202, 354, 567, 698
TspRI	CASTG	4 cut(s)	97, 400, 406, 430
Tth111I	GACNNNGTC	1 cut(s)	602
VpaK11BI	GGWCC	1 cut(s)	683
VspI	ATTAAT	1 cut(s)	237
XceI	RCATGY	2 cut(s)	73, 203
XhoI	CTCGAG	1 cut(s)	743
XmiI	GTMKAC	1 cut(s)	441
XmnI	GAANNNNTTC	1 cut(s)	705
Zsp2I	ATGCAT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.