Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008863

Physical Location & Seq

Genomic Coordinates Reverse (-)

45976903 .. 45977851

Gene Structure 949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009071

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTTTCCCCGTGCGAAGCTGATGCACAGTTGGCATATCTAATGGACATGGGCTACATTAATGGTGTAACAACCATCGATTCAGACTTGATGGCATTTGGGGTTTCCAGGGTATATGACCCCATCAAACTATCTGGCTCCAAATTATTGCATTTGCAGTATGATTTTGAGGACTTGAACCAATTAGATATGGGGATTCCCGTCGTTCACAGTAGCATTAGAAGTTTAGAACCTGTTCCGTCGATTATGGATTCAGACGACCTCGATGGGTCGAGCAAGCCTGCTCTGGTCAATAGGTCCAAAAACATCCCACCCAAACCCAAATGCAAACCCGTCGTAAAAACCAAATGTATAGTCAATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000706 GO:0000710 GO:0000723 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006298 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008309 GO:0008409 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0022402 GO:0022414 GO:0031297 GO:0032200 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0035312 GO:0035861 GO:0042592 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043570 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044786 GO:0045005 GO:0046483 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0051908 GO:0060249 GO:0061982 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090734 GO:0097159 GO:0110025 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1902298 GO:1902969 GO:1903046 GO:1903047 GO:1903211 GO:1990426 GO:1990505

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

122

Amino Acids

13.25

Weight (kDa)

5.19

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XPG_I	PF00867	2 - 45	4.2e-11	XPG I-region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36910 FvH4_6g02530 FvH4_7g04680
rosa_laevigata	RLG00000009071 RLG00000026067
rosa_multiflora	Rmu_sc0001753.1_g000028 Rmu_sc0005139.1_g000010 Rmu_sc0014419.1_g000003 Rmu_sc0014419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276940 Rroxscaffold_5G00387150 Rroxscaffold_7G00212230
rosa_rugosa	Rorug05G0542500
rosa_samantha	Rh1BG428500 Rh1CG440900 Rh1DG461300 Rh4BG445000 Rh4BG445100 Rh4CG462300 Rh4CG462400 Rh6CG048900 Rh6DG044600
rosa_wichuraiana	Rw4G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	107
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
ArsI	GACNNNNNNTTYG	1 cut(s)	339
AseI	ATTAAT	1 cut(s)	60
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	297
BccI	CCATC	4 cut(s)	83, 85, 131, 260
BcgI	CGANNNNNNTGC	4 cut(s)	5, 39, 316, 350
BciT130I	CCWGG	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	1 cut(s)	13
Bsa29I	ATCGAT	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	109
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	306
BshVI	ATCGAT	1 cut(s)	78
BspDI	ATCGAT	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	30, 212
BstC8I	GCNNGC	2 cut(s)	278, 282
BstF5I	GGATG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	78
BsuTUI	ATCGAT	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	306
Cac8I	GCNNGC	2 cut(s)	278, 282
Cfr13I	GGNCC	1 cut(s)	297
ClaI	ATCGAT	1 cut(s)	78
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	4 cut(s)	20, 54, 138, 280
CviKI_1	RGCY	4 cut(s)	20, 54, 138, 280
Eco47I	GGWCC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	107
FaeI	CATG	1 cut(s)	52
FaiI	YATR	8 cut(s)	37, 50, 115, 117, 162, 191, 248, 353
FatI	CATG	1 cut(s)	48
FokI	GGATG	1 cut(s)	293
Hin1II	CATG	1 cut(s)	52
HinfI	GANTC	3 cut(s)	80, 196, 251
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	85, 256, 365
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	3 cut(s)	206, 244, 338
HpyCH4III	ACNGT	2 cut(s)	30, 212
HpyCH4V	TGCA	4 cut(s)	26, 151, 157, 327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	6 cut(s)	94, 120, 121, 246, 272, 294
LweI	GCATC	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	67
MluCI	AATT	2 cut(s)	143, 182
MnlI	CCTC	2 cut(s)	163, 272
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	80, 196, 251
PshBI	ATTAAT	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	297
ScrFI	CCNGG	1 cut(s)	109
SetI	ASST	4 cut(s)	22, 235, 264, 299
SfaNI	GCATC	1 cut(s)	13
SinI	GGWCC	1 cut(s)	297
Sse9I	AATT	2 cut(s)	143, 182
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	2 cut(s)	30, 212
TaqI	TCGA	4 cut(s)	78, 242, 264, 272
TasI	AATT	2 cut(s)	143, 182
TfiI	GAWTC	3 cut(s)	80, 196, 251
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TspGWI	ACGGA	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	297
VspI	ATTAAT	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.