Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008863

Physical Location & Seq

Genomic Coordinates Reverse (-)

461922 .. 463500

Gene Structure 1579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00276940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGGGATAGGAAAGGGAAGCGAATTGTTGGATGACTTTGGAGACAACGCAGTAATAAGAGGCATGCGCCTCGACAGACTGGGCAGTGAGGGCATTGCGAGAGTAGGGGTTGACGCCACTCCCTGGCTTGTGATCGTTCACCATACACTTGAGGATCACCAAAAGAAAAATCAGGAACTGCATGCAAAACTTTTCATGGAGTATTGCGGTAAGAGGATTGATGTACTAAAGCGGAATGGACTTATACCGACTATGGTCTTTGATGGAAATGCTACACCATTAAAGACCCAAATAAAGGAGCTGAGAAAAGCGATAAGCGATGAAAACAAGAAGAATAACAACAACAACAATACGAATGAGATTCGGGAACCTGGTAGTGATATCAGTGACAGTGATAGTGATGTTAATGTCAACAGTGATAGTGAGCCCGTAGACAATAAGTCACCCTATAAGTGGCCAAAACATAGATACATTCCTGAAAGATCCAAAGTAGTCAAGTGGTTGACCGAGGAGAGGCAAGTAAAGTTCTTTGTGGCTCCTTATGAAGCCGATGCCCAATTGACACACTTGGCAAGCAAGAAAATAATAGATGCCGTCATCACTGAGGATTCAGACCTTATAGCATTTGGATGTAAAAAAATTATCTATAACATTGATTTTGAAGAAGAAACATGTGATTATTACTCATTTGATCGTTTAAAAGAAGTGAACGATGCCTACAAAGATTTTTCGCAGAAGAAGCTTCTAGAAATGGCAATAATGATAGGCTGCGATTATTTACCAAATTTGGCGGGCATAGGCATTAGTAAAGCTTACAAGGAGATAACGGAGCAGGAAAATTATAAAAATGTAATTGCCTGGTCGAAGAGAGAGCTTGTGCTTAAAACTGGGGTCCGGAATACACAAGATACAACTTTTAGGCCAGAGATTCTAAAAAATTTTCCAAATGGCAATTCGGCGTTCACATATCAACAAGTTTATAATCCCGAATCTAGAACTTGTGAACGCTTGTCTCATATAAGATATAATAAGCTACAAGATGAAGTGGTGGGACGAATAATAGAGTTTTTAGGACCACGTTTGAAGGACGAATCTGTTCATAATATTGCAATAGGTAATAGACCTTCGAAGTTGATCGAGAAATTTGATGTAGATCAAAGGCACGAAGATCCGGGAGAGACAGTTAAGTATGGGCTGAATACTTTGGAAAGATTTTTTGGTAGTAAGAAAAGCCGAAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

414

Amino Acids

47.56

Weight (kDa)

6.37

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XPG_N	PF00752	18 - 108	7.2e-07	XPG N-terminal domain
XPG_I	PF00867	174 - 258	5.6e-20	XPG I-region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36910 FvH4_6g02530 FvH4_7g04680
rosa_laevigata	RLG00000009071 RLG00000026067
rosa_multiflora	Rmu_sc0001753.1_g000028 Rmu_sc0005139.1_g000010 Rmu_sc0014419.1_g000003 Rmu_sc0014419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276940 Rroxscaffold_5G00387150 Rroxscaffold_7G00212230
rosa_rugosa	Rorug05G0542500
rosa_samantha	Rh1BG428500 Rh1CG440900 Rh1DG461300 Rh4BG445000 Rh4BG445100 Rh4CG462300 Rh4CG462400 Rh6CG048900 Rh6DG044600
rosa_wichuraiana	Rw4G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	843, 981
AccB7I	CCANNNNNTGG	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	432
AccIII	TCCGGA	1 cut(s)	894
AciI	CCGC	3 cut(s)	207, 232, 791
AclWI	GGATC	3 cut(s)	162, 477, 1163
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	3 cut(s)	784, 937, 1142
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	4 cut(s)	123, 295, 453, 513
AflIII	ACRYGT	1 cut(s)	671
AgsI	TTSAA	2 cut(s)	662, 1084
AhdI	GACNNNNNGTC	1 cut(s)	439
AjnI	CCWGG	3 cut(s)	122, 370, 857
AjuI	GAANNNNNNNTTGG	4 cut(s)	937, 969, 1200, 1232
AluBI	AGCT	5 cut(s)	301, 742, 812, 874, 1033
AluI	AGCT	5 cut(s)	301, 742, 812, 874, 1033
Alw26I	GTCTC	3 cut(s)	36, 1017, 1172
AlwI	GGATC	3 cut(s)	162, 477, 1163
AlwNI	CAGNNNCTG	1 cut(s)	178
Aor13HI	TCCGGA	1 cut(s)	894
AoxI	GGCC	2 cut(s)	455, 920
ApeKI	GCWGC	1 cut(s)	768
ApoI	RAATTY	3 cut(s)	784, 937, 1142
Asp700I	GAANNNNTTC	1 cut(s)	1095
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	892, 1073
AsuC2I	CCSGG	1 cut(s)	1173
AsuHPI	GGTGA	3 cut(s)	131, 149, 435
AsuII	TTCGAA	1 cut(s)	1127
AvaII	GGWCC	2 cut(s)	892, 1073
BalI	TGGCCA	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	429
BarI	GAAGNNNNNNTAC	2 cut(s)	1108, 1140
BbvI	GCAGC	1 cut(s)	755
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	578
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	3 cut(s)	124, 372, 859
BcnI	CCSGG	1 cut(s)	1173
BcoDI	GTCTC	3 cut(s)	36, 1017, 1172
BfaI	CTAG	2 cut(s)	746, 993
BisI	GCNGC	1 cut(s)	769
BlsI	GCNGC	1 cut(s)	770
Bme1390I	CCNGG	4 cut(s)	124, 372, 859, 1173
Bme18I	GGWCC	2 cut(s)	892, 1073
BmeRI	GACNNNNNGTC	1 cut(s)	439
BmgT120I	GGNCC	2 cut(s)	892, 1073
BmiI	GGNNCC	3 cut(s)	369, 537, 893
BmrFI	CCNGG	4 cut(s)	124, 372, 859, 1173
BmrI	ACTGGG	2 cut(s)	89, 897
BmsI	GCATC	3 cut(s)	541, 580, 703
BmuI	ACTGGG	2 cut(s)	89, 897
BoxI	GACNNNNGTC	1 cut(s)	254
Bpu14I	TTCGAA	1 cut(s)	1127
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	1173
BsaBI	GATNNNNATC	1 cut(s)	1152
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	122, 507
BsaWI	WCCGGW	1 cut(s)	894
BsaXI	ACNNNNNCTCC	2 cut(s)	1167, 1197
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 295, 453, 513
Bse1I	ACTGG	2 cut(s)	84, 892
Bse3DI	GCAATG	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	1152
BseAI	TCCGGA	1 cut(s)	894
BseBI	CCWGG	3 cut(s)	124, 372, 859
BseDI	CCNNGG	2 cut(s)	122, 507
BseGI	GGATG	2 cut(s)	37, 635
BseJI	GATNNNNATC	1 cut(s)	1152
BseLI	CCNNNNNNNGG	4 cut(s)	123, 295, 453, 513
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	293, 594
BseNI	ACTGG	2 cut(s)	84, 892
BseRI	GAGGAG	1 cut(s)	524
BseXI	GCAGC	1 cut(s)	755
BshFI	GGCC	2 cut(s)	457, 922
BsiSI	CCGG	2 cut(s)	895, 1172
BslFI	GGGAC	1 cut(s)	1065
BslI	CCNNNNNNNGG	4 cut(s)	123, 295, 453, 513
BsmAI	GTCTC	3 cut(s)	36, 1017, 1172
BsmFI	GGGAC	1 cut(s)	1065
BsnI	GGCC	2 cut(s)	457, 922
Bsp119I	TTCGAA	1 cut(s)	1127
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp13I	TCCGGA	1 cut(s)	894
Bsp143I	GATC	7 cut(s)	132, 154, 482, 691, 1134, 1153, 1168
BspACI	CCGC	3 cut(s)	207, 232, 791
BspANI	GGCC	2 cut(s)	457, 922
BspCNI	CTCAG	2 cut(s)	294, 595
BspEI	TCCGGA	1 cut(s)	894
BspLI	GGNNCC	3 cut(s)	369, 537, 893
BspPI	GGATC	3 cut(s)	162, 477, 1163
BspT104I	TTCGAA	1 cut(s)	1127
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	84, 892
BssECI	CCNNGG	2 cut(s)	122, 507
BssMI	GATC	7 cut(s)	132, 154, 482, 691, 1134, 1153, 1168
BssNI	GRCGYC	1 cut(s)	114
Bst2UI	CCWGG	3 cut(s)	124, 372, 859
Bst4CI	ACNGT	3 cut(s)	392, 416, 1183
Bst6I	CTCTTC	1 cut(s)	860
BstACI	GRCGYC	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	1127
BstC8I	GCNNGC	4 cut(s)	65, 183, 574, 793
BstDEI	CTNAG	2 cut(s)	302, 603
BstF5I	GGATG	2 cut(s)	37, 635
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	7 cut(s)	135, 157, 485, 694, 1137, 1156, 1171
BstMAI	GTCTC	3 cut(s)	36, 1017, 1172
BstMBI	GATC	7 cut(s)	132, 154, 482, 691, 1134, 1153, 1168
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 739
BstNI	CCWGG	3 cut(s)	124, 372, 859
BstNSI	RCATGY	3 cut(s)	67, 185, 675
BstPAI	GACNNNNGTC	1 cut(s)	254
BstSCI	CCNGG	4 cut(s)	122, 370, 857, 1171
BstV1I	GCAGC	1 cut(s)	755
BstX2I	RGATCY	2 cut(s)	482, 1168
BstYI	RGATCY	2 cut(s)	482, 1168
BsuRI	GGCC	2 cut(s)	457, 922
BtgZI	GCGATG	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	37, 635
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	5 cut(s)	91, 391, 397, 421, 600
Cac8I	GCNNGC	4 cut(s)	65, 183, 574, 793
CaiI	CAGNNNCTG	1 cut(s)	178
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	892, 1073
CseI	GACGC	1 cut(s)	122
CsiI	ACCWGGT	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	4 cut(s)	64, 182, 196, 672
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	302, 603
DpnI	GATC	7 cut(s)	134, 156, 484, 693, 1136, 1155, 1170
DpnII	GATC	7 cut(s)	132, 154, 482, 691, 1134, 1153, 1168
DraI	TTTAAA	1 cut(s)	699
DriI	GACNNNNNGTC	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	860
Eam1105I	GACNNNNNGTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	860
Eco24I	GRGCYC	1 cut(s)	429
Eco32I	GATATC	1 cut(s)	382
Eco47I	GGWCC	2 cut(s)	892, 1073
EcoRII	CCWGG	3 cut(s)	122, 370, 857
EcoRV	GATATC	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	429
FaeI	CATG	4 cut(s)	67, 185, 199, 675
FaqI	GGGAC	1 cut(s)	1065
FatI	CATG	4 cut(s)	63, 181, 195, 671
FauI	CCCGC	1 cut(s)	784
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	1 cut(s)	769
FokI	GGATG	2 cut(s)	44, 642
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	769
FspBI	CTAG	2 cut(s)	746, 993
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	769
HaeIII	GGCC	2 cut(s)	457, 922
HapII	CCGG	2 cut(s)	895, 1172
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	67, 185, 199, 675
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	3 cut(s)	112, 412, 504
HindII	GTYRAC	3 cut(s)	112, 412, 504
HindIII	AAGCTT	2 cut(s)	740, 810
HinfI	GANTC	5 cut(s)	361, 608, 928, 989, 1091
HpaII	CCGG	2 cut(s)	895, 1172
HphI	GGTGA	3 cut(s)	131, 149, 435
Hpy166II	GTNNAC	8 cut(s)	112, 139, 412, 433, 504, 709, 963, 1004
Hpy188I	TCNGA	1 cut(s)	613
Hpy188III	TCNNGA	8 cut(s)	173, 365, 476, 746, 895, 986, 993, 1138
Hpy8I	GTNNAC	8 cut(s)	112, 139, 412, 433, 504, 709, 963, 1004
HpyAV	CCTTC	2 cut(s)	1078, 1134
HpyCH4III	ACNGT	3 cut(s)	392, 416, 1183
HpyCH4IV	ACGT	1 cut(s)	1078
HpyCH4V	TGCA	3 cut(s)	181, 185, 1109
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 739
HpyF3I	CTNAG	2 cut(s)	302, 603
HpySE526I	ACGT	1 cut(s)	1078
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	67, 185, 199, 675
HspAI	GCGC	1 cut(s)	67
Kpn2I	TCCGGA	1 cut(s)	894
Kzo9I	GATC	7 cut(s)	132, 154, 482, 691, 1134, 1153, 1168
LmnI	GCTCC	3 cut(s)	298, 541, 829
Lsp1109I	GCAGC	1 cut(s)	755
LweI	GCATC	3 cut(s)	541, 580, 703
MabI	ACCWGGT	1 cut(s)	370
MaeI	CTAG	2 cut(s)	746, 993
MaeII	ACGT	1 cut(s)	1078
MaeIII	GTNAC	2 cut(s)	386, 441
MalI	GATC	7 cut(s)	134, 156, 484, 693, 1136, 1155, 1170
MboI	GATC	7 cut(s)	132, 154, 482, 691, 1134, 1153, 1168
MboII	GAAGA	6 cut(s)	343, 674, 677, 748, 877, 1178
MfeI	CAATTG	1 cut(s)	557
MflI	RGATCY	2 cut(s)	482, 1168
MhlI	GDGCHC	1 cut(s)	429
MlsI	TGGCCA	1 cut(s)	457
MluCI	AATT	9 cut(s)	23, 557, 639, 784, 838, 852, 937, 952, 1142
MluNI	TGGCCA	1 cut(s)	457
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	8 cut(s)	53, 80, 82, 145, 207, 502, 507, 598
Mox20I	TGGCCA	1 cut(s)	457
MroI	TCCGGA	1 cut(s)	894
MroXI	GAANNNNTTC	1 cut(s)	1095
MscI	TGGCCA	1 cut(s)	457
MseI	TTAA	5 cut(s)	281, 405, 698, 882, 1185
MslI	CAYNNNNRTG	1 cut(s)	628
Msp20I	TGGCCA	1 cut(s)	457
MspI	CCGG	2 cut(s)	895, 1172
MspR9I	CCNGG	4 cut(s)	124, 372, 859, 1173
MunI	CAATTG	1 cut(s)	557
MvaI	CCWGG	3 cut(s)	124, 372, 859
MwoI	GCNNNNNNNGC	2 cut(s)	90, 739
NciI	CCSGG	1 cut(s)	1173
NdeII	GATC	7 cut(s)	132, 154, 482, 691, 1134, 1153, 1168
NlaIII	CATG	4 cut(s)	67, 185, 199, 675
NlaIV	GGNNCC	3 cut(s)	369, 537, 893
NmuCI	GTSAC	2 cut(s)	386, 441
NspI	RCATGY	3 cut(s)	67, 185, 675
NspV	TTCGAA	1 cut(s)	1127
PaeI	GCATGC	2 cut(s)	67, 185
PciI	ACATGT	1 cut(s)	671
PdmI	GAANNNNTTC	1 cut(s)	1095
PfeI	GAWTC	5 cut(s)	361, 608, 928, 989, 1091
PflMI	CCANNNNNTGG	1 cut(s)	123
PfoI	TCCNGGA	1 cut(s)	1171
PkrI	GCNGC	1 cut(s)	770
PscI	ACATGT	1 cut(s)	671
PshAI	GACNNNNGTC	1 cut(s)	254
PsiI	TTATAA	2 cut(s)	843, 981
Psp6I	CCWGG	3 cut(s)	122, 370, 857
PspGI	CCWGG	3 cut(s)	122, 370, 857
PspN4I	GGNNCC	3 cut(s)	369, 537, 893
PspPI	GGNCC	2 cut(s)	892, 1073
PsrI	GAACNNNNNNTAC	2 cut(s)	701, 733
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	2 cut(s)	482, 1168
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	628
SaqAI	TTAA	5 cut(s)	281, 405, 698, 882, 1185
SatI	GCNGC	1 cut(s)	769
Sau3AI	GATC	7 cut(s)	132, 154, 482, 691, 1134, 1153, 1168
Sau96I	GGNCC	2 cut(s)	892, 1073
ScrFI	CCNGG	4 cut(s)	124, 372, 859, 1173
SduI	GDGCHC	1 cut(s)	429
SexAI	ACCWGGT	1 cut(s)	370
SfaNI	GCATC	3 cut(s)	541, 580, 703
SfuI	TTCGAA	1 cut(s)	1127
SinI	GGWCC	2 cut(s)	892, 1073
SmiMI	CAYNNNNRTG	1 cut(s)	628
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SphI	GCATGC	2 cut(s)	67, 185
Sse9I	AATT	9 cut(s)	23, 557, 639, 784, 838, 852, 937, 952, 1142
SsiI	CCGC	3 cut(s)	207, 232, 791
SspI	AATATT	1 cut(s)	1105
SspMI	CTAG	2 cut(s)	746, 993
StyD4I	CCNGG	4 cut(s)	122, 370, 857, 1171
TaaI	ACNGT	3 cut(s)	392, 416, 1183
TaiI	ACGT	1 cut(s)	1081
TaqI	TCGA	4 cut(s)	72, 863, 1127, 1137
TaqII	GACCGA	1 cut(s)	521
TasI	AATT	9 cut(s)	23, 557, 639, 784, 838, 852, 937, 952, 1142
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	5 cut(s)	361, 608, 928, 989, 1091
Tru1I	TTAA	5 cut(s)	281, 405, 698, 882, 1185
Tru9I	TTAA	5 cut(s)	281, 405, 698, 882, 1185
TscAI	CASTG	5 cut(s)	91, 391, 397, 421, 607
TseFI	GTSAC	2 cut(s)	386, 441
TseI	GCWGC	1 cut(s)	768
Tsp45I	GTSAC	2 cut(s)	386, 441
TspDTI	ATGAA	5 cut(s)	184, 336, 558, 1056, 1088
TspGWI	ACGGA	1 cut(s)	842
TspRI	CASTG	5 cut(s)	91, 391, 397, 421, 607
Van91I	CCANNNNNTGG	1 cut(s)	123
VpaK11BI	GGWCC	2 cut(s)	892, 1073
XapI	RAATTY	3 cut(s)	784, 937, 1142
XbaI	TCTAGA	2 cut(s)	745, 992
XceI	RCATGY	3 cut(s)	67, 185, 675
XmiI	GTMKAC	1 cut(s)	432
XmnI	GAANNNNTTC	1 cut(s)	1095
XspI	CTAG	2 cut(s)	746, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.