Rh4BG445000

exonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0008863
Physical Location & Seq
Forward (+)
58444282 .. 58445368
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG445000.1

Sequence Viewer

Length: 399 bp
ATGGGGGTAAAAAGAGCAGACGCATTGTTCGACCAGTTGGGACCAACGGTTCTAAAAGACATCCGTCTCGACCAATTGGACTTGAGCGGTAAAAAGGTGGGGATTGATGCCACCTTATGGCTTGGGACCGTCAAAAGTACGCTCAAGGCCAACCAAAAGAAATTATCCTCAAGTACTGAAAAGTTTCTCGTCAAGGTCCAAGAGAAGACGTATTTTCTTTGTACTCAAAATCCTGATTTTCTTATATATATGTGGTTAACTAAAGAAGGTGTGGAGTTTATTGTGGCTCCTTACGAAGCTGATGCCCAATTAACATACTTGACAATAAAGGGTAAAATAGATGCAGTTATCACGGAGGACTCGGACCTCATTGCATTTGGTTGTCCACATGTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03430 map03430
Pfam Domains
Protein Families
XPG_I XPG_N

Protein Analysis

132

Amino Acids

14.7

Weight (kDa)

5.8

Isoelectric Point (pI)

21.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XPG_I PF00867 90 - 131 2.5e-15 XPG I-region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 117
AccBSI CCGCTC 1 cut(s) 87
AciI CCGC 1 cut(s) 87
AfaI GTAC 3 cut(s) 139, 175, 223
AfiI CCNNNNNNNGG 1 cut(s) 117
AflIII ACRYGT 1 cut(s) 388
AloI GAACNNNNNNTCC 2 cut(s) 33, 65
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 71
AoxI GGCC 1 cut(s) 147
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
Asp700I GAANNNNTTC 1 cut(s) 183
AspS9I GGNCC 4 cut(s) 41, 126, 196, 364
AvaII GGWCC 4 cut(s) 41, 126, 196, 364
BbsI GAAGAC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BcoDI GTCTC 1 cut(s) 71
BmcAI AGTACT 1 cut(s) 175
Bme18I GGWCC 4 cut(s) 41, 126, 196, 364
BmgT120I GGNCC 4 cut(s) 41, 126, 196, 364
BmiI GGNNCC 3 cut(s) 42, 127, 288
BmsI GCATC 3 cut(s) 97, 292, 331
BoxI GACNNNNGTC 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 212
BpuEI CTTGAG 3 cut(s) 103, 128, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 369
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 34
BshFI GGCC 1 cut(s) 149
BslFI GGGAC 2 cut(s) 54, 139
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 71
BsmBI CGTCTC 1 cut(s) 71
BsmFI GGGAC 2 cut(s) 54, 139
BsnI GGCC 1 cut(s) 149
BspACI CCGC 1 cut(s) 87
BspANI GGCC 1 cut(s) 149
BspLI GGNNCC 3 cut(s) 42, 127, 288
BsrBI CCGCTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 1 cut(s) 34
Bst4CI ACNGT 2 cut(s) 49, 130
BstF5I GGATG 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 392
BstPAI GACNNNNGTC 1 cut(s) 63
BstV2I GAAGAC 1 cut(s) 212
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 60
Cfr13I GGNCC 4 cut(s) 41, 126, 196, 364
CseI GACGC 1 cut(s) 29
Csp6I GTAC 3 cut(s) 138, 174, 222
CviAII CATG 1 cut(s) 389
CviJI RGCY 4 cut(s) 121, 149, 287, 299
CviKI_1 RGCY 4 cut(s) 121, 149, 287, 299
CviQI GTAC 3 cut(s) 138, 174, 222
Eco47I GGWCC 4 cut(s) 41, 126, 196, 364
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 1 cut(s) 392
FaiI YATR 7 cut(s) 118, 245, 247, 249, 251, 316, 390
FaqI GGGAC 2 cut(s) 54, 139
FatI CATG 1 cut(s) 388
FokI GGATG 1 cut(s) 47
HaeIII GGCC 1 cut(s) 149
HgaI GACGC 1 cut(s) 29
Hin1II CATG 1 cut(s) 392
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 1 cut(s) 359
HpaI GTTAAC 1 cut(s) 258
Hpy166II GTNNAC 2 cut(s) 258, 386
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 2 cut(s) 68, 233
Hpy8I GTNNAC 2 cut(s) 258, 386
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 2 cut(s) 49, 130
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 2 cut(s) 344, 374
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 1 cut(s) 392
KspAI GTTAAC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 2 cut(s) 47, 246
LweI GCATC 3 cut(s) 97, 292, 331
MaeII ACGT 1 cut(s) 209
MbiI CCGCTC 1 cut(s) 87
MboII GAAGA 1 cut(s) 217
MfeI CAATTG 1 cut(s) 74
MluCI AATT 3 cut(s) 74, 161, 308
MlyI GAGTC 1 cut(s) 353
MnlI CCTC 3 cut(s) 178, 349, 377
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 3 cut(s) 257, 311, 397
MunI CAATTG 1 cut(s) 74
NlaIII CATG 1 cut(s) 392
NlaIV GGNNCC 3 cut(s) 42, 127, 288
NspI RCATGY 1 cut(s) 392
PciI ACATGT 1 cut(s) 388
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 183
PflMI CCANNNNNTGG 1 cut(s) 117
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
PscI ACATGT 1 cut(s) 388
PshAI GACNNNNGTC 1 cut(s) 63
PspN4I GGNNCC 3 cut(s) 42, 127, 288
PspPI GGNCC 4 cut(s) 41, 126, 196, 364
RsaI GTAC 3 cut(s) 139, 175, 223
RsaNI GTAC 3 cut(s) 138, 174, 222
SaqAI TTAA 3 cut(s) 257, 311, 397
Sau96I GGNCC 4 cut(s) 41, 126, 196, 364
ScaI AGTACT 1 cut(s) 175
SchI GAGTC 1 cut(s) 353
SetI ASST 7 cut(s) 99, 116, 198, 212, 271, 301, 369
SfaNI GCATC 3 cut(s) 97, 292, 331
SinI GGWCC 4 cut(s) 41, 126, 196, 364
SmlI CTYRAG 3 cut(s) 82, 143, 169
SmoI CTYRAG 3 cut(s) 82, 143, 169
Sse9I AATT 3 cut(s) 74, 161, 308
SsiI CCGC 1 cut(s) 87
TaaI ACNGT 2 cut(s) 49, 130
TaiI ACGT 1 cut(s) 212
TaqI TCGA 2 cut(s) 30, 69
TasI AATT 3 cut(s) 74, 161, 308
TatI WGTACW 2 cut(s) 173, 221
Tru1I TTAA 3 cut(s) 257, 311, 397
Tru9I TTAA 3 cut(s) 257, 311, 397
TspGWI ACGGA 2 cut(s) 53, 368
Van91I CCANNNNNTGG 1 cut(s) 117
VpaK11BI GGWCC 4 cut(s) 41, 126, 196, 364
XceI RCATGY 1 cut(s) 392
XmnI GAANNNNTTC 1 cut(s) 183
ZrmI AGTACT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.