Rh6CG048900

exonuclease 1. Source PGD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008863
Physical Location & Seq
Reverse (-)
4840681 .. 4848085
7405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG048900.1

Sequence Viewer

Length: 1134 bp
ATGAGATTGTGCAACAAGGTAAAGCAAGCAAACCTTGGTGGAGTAATAAGTTTGATTGGTCCGGCTACTAGGCTCACAAAATCGTATTTCAATTGGCCACGACACAAAATCTTTTGCAGCTACTTTGATTCGATATGTTATGAATCAAGCAATGATCAGCATCAACAAACTATGAGATATAGTCATAAAGTGTTTTACTACTTTCCTGATGTCTCTGGGTTGAGCTTTGAGAAGCTCGTATTGCCACCTGGGATTAGCATACTCATAGAGATGAGACAATATATGAGAGTTATACAGTTGGACAATTTCTCGGAGCTTGAGGGCAAAACATTAGGAATTGACGGCACCGCTTGGCTTGTAGAGGCCAATGATAAGCAGAAAAATAAACATAAGTTTAGCAAAGCTGATTATATTGTGAACAAGTGTCTCGAATTGAAAACGCACAAGATTACTCCTCTTGTTGTGTTTGACACACTTGTGCCACCAACAAAGGAGATGAACAAAGGTGGTTATATTGTGCACAAGTATTTCGCAATGAGAATGCTTAAGATTACGCCTCTTGTTGTGTTTGACACACTTGTGCCACTAGTAAAGGAGATGAAGAAAAATTTCTGGAAAAATAATGTTCATTCTAATTATGTTGAGAGAGCCGTACATGAGTGTCTCAGTCGCCATGTAATCAAGTTTTTCTGTTCCCTCTATGAATCTGATGCAGAGCTGACATACTTGATGGAGAAAGAGTACATTTATGCTGTCATGACAAGCGACTCAGATCTTATGGCTTATGAGGTTTCAAGGCAATATGTTGATCAAATTGGTAATTCTTACAACACTAGGAAACACATGACACTATGCTCCAGCAGTCATGCCGTGAGATTCCCTAATGTGATGTTCCATCGTATCCATATGGACCATCTACAACTGCCTCTTCACACATGGAACAAACTATACAATGAGAGGGATGTGGATGTCATTCTCAATCCTCGCGGTTCTCTTAGAGGTTTTGCATGCTCGGAAATAGAGCATTTGGTTGAAAAGGTTTCAGAAAAGCTTATTGCTGGAGTTTTGTCCGAGCATGAGCCATTTCTTAAAACTCGACTCACAAAACCAGGTTTCAGCATAGAGCGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XPG_I XPG_N

Protein Analysis

377

Amino Acids

43.92

Weight (kDa)

8.96

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XPG_N PF00752 88 - 166 5.4e-08 XPG N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 344
AccII CGCG 1 cut(s) 987
AciI CCGC 2 cut(s) 348, 987
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 1 cut(s) 607
AfaI GTAC 2 cut(s) 654, 743
AflII CTTAAG 1 cut(s) 545
AgsI TTSAA 4 cut(s) 91, 436, 795, 1034
AhlI ACTAGT 1 cut(s) 586
AjnI CCWGG 2 cut(s) 247, 1108
AleI CACNNNNGTG 2 cut(s) 476, 578
AluBI AGCT 7 cut(s) 120, 225, 235, 316, 404, 718, 1051
AluI AGCT 7 cut(s) 120, 225, 235, 316, 404, 718, 1051
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 4 cut(s) 217, 268, 431, 668
Alw44I GTGCAC 1 cut(s) 518
AoxI GGCC 2 cut(s) 95, 363
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 607
Asp700I GAANNNNTTC 1 cut(s) 608
AspS9I GGNCC 2 cut(s) 59, 910
AvaII GGWCC 2 cut(s) 59, 910
BaeGI GKGCMC 1 cut(s) 522
BalI TGGCCA 1 cut(s) 97
BanI GGYRCC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 1 cut(s) 129
BccI CCATC 3 cut(s) 724, 903, 921
BceAI ACGGC 3 cut(s) 358, 635, 854
BciT130I CCWGG 2 cut(s) 249, 1110
BciVI GTATCC 1 cut(s) 911
BclI TGATCA 2 cut(s) 154, 808
BcoDI GTCTC 4 cut(s) 217, 268, 431, 668
BcuI ACTAGT 1 cut(s) 586
BfaI CTAG 4 cut(s) 69, 587, 834, 1132
BfrI CTTAAG 1 cut(s) 545
BfuI GTATCC 1 cut(s) 911
BglII AGATCT 1 cut(s) 772
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 2 cut(s) 249, 1110
Bme18I GGWCC 2 cut(s) 59, 910
BmgT120I GGNCC 2 cut(s) 59, 910
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 2 cut(s) 249, 1110
BmsI GCATC 2 cut(s) 169, 700
BpmI CTGGAG 2 cut(s) 841, 1080
BpuEI CTTGAG 1 cut(s) 338
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 34, 248
BsaXI ACNNNNNCTCC 2 cut(s) 725, 755
Bse3DI GCAATG 2 cut(s) 157, 540
Bse8I GATNNNNATC 1 cut(s) 159
BseBI CCWGG 2 cut(s) 249, 1110
BseDI CCNNGG 2 cut(s) 34, 248
BseGI GGATG 2 cut(s) 967, 973
BseJI GATNNNNATC 1 cut(s) 159
BseMI GCAATG 2 cut(s) 157, 540
BseMII CTCAG 2 cut(s) 679, 783
BseRI GAGGAG 1 cut(s) 444
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 987
BshFI GGCC 2 cut(s) 97, 365
BshNI GGYRCC 1 cut(s) 344
BsiHKAI GWGCWC 1 cut(s) 522
BsiSI CCGG 1 cut(s) 62
BsmAI GTCTC 4 cut(s) 217, 268, 431, 668
BsmI GAATGC 1 cut(s) 546
BsnI GGCC 2 cut(s) 97, 365
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 3 cut(s) 154, 772, 808
BspACI CCGC 2 cut(s) 348, 987
BspANI GGCC 2 cut(s) 97, 365
BspCNI CTCAG 2 cut(s) 678, 782
BspFNI CGCG 1 cut(s) 987
BspHI TCATGA 1 cut(s) 756
BspLI GGNNCC 1 cut(s) 346
BspT107I GGYRCC 1 cut(s) 344
BspTI CTTAAG 1 cut(s) 545
BsrDI GCAATG 2 cut(s) 157, 540
BssECI CCNNGG 2 cut(s) 34, 248
BssMI GATC 3 cut(s) 154, 772, 808
BssT1I CCWWGG 1 cut(s) 34
Bst2UI CCWGG 2 cut(s) 249, 1110
Bst4CI ACNGT 1 cut(s) 297
Bst6I CTCTTC 1 cut(s) 933
BstAFI CTTAAG 1 cut(s) 545
BstC8I GCNNGC 2 cut(s) 27, 1009
BstDEI CTNAG 3 cut(s) 665, 769, 995
BstF5I GGATG 2 cut(s) 967, 973
BstFNI CGCG 1 cut(s) 987
BstKTI GATC 3 cut(s) 157, 775, 811
BstMAI GTCTC 4 cut(s) 217, 268, 431, 668
BstMBI GATC 3 cut(s) 154, 772, 808
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 2 cut(s) 249, 1110
BstNSI RCATGY 1 cut(s) 1011
BstSCI CCNGG 2 cut(s) 247, 1108
BstSLI GKGCMC 1 cut(s) 522
BstUI CGCG 1 cut(s) 987
BstV1I GCAGC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 772
BstYI RGATCY 1 cut(s) 772
BsuI GTATCC 1 cut(s) 911
BsuRI GGCC 2 cut(s) 97, 365
BtsCI GGATG 2 cut(s) 967, 973
Cac8I GCNNGC 2 cut(s) 27, 1009
CciI TCATGA 1 cut(s) 756
Cfr13I GGNCC 2 cut(s) 59, 910
CsiI ACCWGGT 1 cut(s) 1108
Csp6I GTAC 2 cut(s) 653, 742
CviAII CATG 8 cut(s) 656, 674, 757, 844, 866, 936, 1008, 1076
CviQI GTAC 2 cut(s) 653, 742
DdeI CTNAG 3 cut(s) 665, 769, 995
DpnI GATC 3 cut(s) 156, 774, 810
DpnII GATC 3 cut(s) 154, 772, 808
EaeI YGGCCR 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 933
EarI CTCTTC 1 cut(s) 933
Eco130I CCWWGG 1 cut(s) 34
Eco47I GGWCC 2 cut(s) 59, 910
EcoRII CCWGG 2 cut(s) 247, 1108
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 8 cut(s) 659, 677, 760, 847, 869, 939, 1011, 1079
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FatI CATG 8 cut(s) 655, 673, 756, 843, 865, 935, 1007, 1075
FauNDI CATATG 1 cut(s) 906
FbaI TGATCA 2 cut(s) 154, 808
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 2 cut(s) 974, 980
Fsp4HI GCNGC 1 cut(s) 118
FspBI CTAG 4 cut(s) 69, 587, 834, 1132
GluI GCNGC 1 cut(s) 118
GsuI CTGGAG 2 cut(s) 841, 1080
HaeIII GGCC 2 cut(s) 97, 365
HapII CCGG 1 cut(s) 62
Hin1II CATG 8 cut(s) 659, 677, 760, 847, 869, 939, 1011, 1079
HindIII AAGCTT 1 cut(s) 1049
HinfI GANTC 6 cut(s) 128, 143, 704, 767, 876, 1098
HpaII CCGG 1 cut(s) 62
Hpy166II GTNNAC 2 cut(s) 418, 520
Hpy188I TCNGA 6 cut(s) 313, 709, 772, 1015, 1045, 1072
Hpy188III TCNNGA 4 cut(s) 206, 428, 613, 757
Hpy8I GTNNAC 2 cut(s) 418, 520
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4V TGCA 5 cut(s) 12, 117, 520, 713, 1007
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 3 cut(s) 665, 769, 995
Hsp92II CATG 8 cut(s) 659, 677, 760, 847, 869, 939, 1011, 1079
Ksp22I TGATCA 2 cut(s) 154, 808
Kzo9I GATC 3 cut(s) 154, 772, 808
LmnI GCTCC 2 cut(s) 313, 860
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 2 cut(s) 169, 700
MabI ACCWGGT 1 cut(s) 1108
MaeI CTAG 4 cut(s) 69, 587, 834, 1132
MalI GATC 3 cut(s) 156, 774, 810
MboI GATC 3 cut(s) 154, 772, 808
MboII GAAGA 2 cut(s) 613, 920
MfeI CAATTG 1 cut(s) 91
MflI RGATCY 1 cut(s) 772
MhlI GDGCHC 1 cut(s) 522
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 8 cut(s) 91, 304, 336, 431, 607, 634, 813, 820
MluNI TGGCCA 1 cut(s) 97
MlyI GAGTC 2 cut(s) 761, 1092
MmeI TCCRAC 1 cut(s) 279
Mox20I TGGCCA 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 608
MscI TGGCCA 1 cut(s) 97
MseI TTAA 2 cut(s) 546, 1089
MslI CAYNNNNRTG 3 cut(s) 269, 476, 578
Msp20I TGGCCA 1 cut(s) 97
MspCI CTTAAG 1 cut(s) 545
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 249, 1110
MunI CAATTG 1 cut(s) 91
Mva1269I GAATGC 1 cut(s) 546
MvaI CCWGG 2 cut(s) 249, 1110
MvnI CGCG 1 cut(s) 987
MwoI GCNNNNNNNGC 1 cut(s) 241
NdeI CATATG 1 cut(s) 906
NdeII GATC 3 cut(s) 154, 772, 808
NlaIII CATG 8 cut(s) 659, 677, 760, 847, 869, 939, 1011, 1079
NlaIV GGNNCC 1 cut(s) 346
NspI RCATGY 1 cut(s) 1011
OliI CACNNNNGTG 2 cut(s) 476, 578
PaeI GCATGC 1 cut(s) 1011
PagI TCATGA 1 cut(s) 756
PctI GAATGC 1 cut(s) 546
PdmI GAANNNNTTC 1 cut(s) 608
PfeI GAWTC 4 cut(s) 128, 143, 704, 876
PkrI GCNGC 1 cut(s) 119
PleI GAGTC 2 cut(s) 761, 1092
PpsI GAGTC 2 cut(s) 761, 1092
Psp6I CCWGG 2 cut(s) 247, 1108
PspGI CCWGG 2 cut(s) 247, 1108
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 2 cut(s) 59, 910
PsrI GAACNNNNNNTAC 2 cut(s) 932, 964
PsuI RGATCY 1 cut(s) 772
RsaI GTAC 2 cut(s) 654, 743
RsaNI GTAC 2 cut(s) 653, 742
RseI CAYNNNNRTG 3 cut(s) 269, 476, 578
SaqAI TTAA 2 cut(s) 546, 1089
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 3 cut(s) 154, 772, 808
Sau96I GGNCC 2 cut(s) 59, 910
SchI GAGTC 2 cut(s) 761, 1092
ScrFI CCNGG 2 cut(s) 249, 1110
SduI GDGCHC 1 cut(s) 522
SexAI ACCWGGT 1 cut(s) 1108
SfaNI GCATC 2 cut(s) 169, 700
SinI GGWCC 2 cut(s) 59, 910
SmiMI CAYNNNNRTG 3 cut(s) 269, 476, 578
SmlI CTYRAG 2 cut(s) 317, 545
SmoI CTYRAG 2 cut(s) 317, 545
SpeI ACTAGT 1 cut(s) 586
SphI GCATGC 1 cut(s) 1011
Sse9I AATT 8 cut(s) 91, 304, 336, 431, 607, 634, 813, 820
SsiI CCGC 2 cut(s) 348, 987
SspMI CTAG 4 cut(s) 69, 587, 834, 1132
StyD4I CCNGG 2 cut(s) 247, 1108
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 1 cut(s) 297
TaqI TCGA 3 cut(s) 131, 429, 1096
TasI AATT 8 cut(s) 91, 304, 336, 431, 607, 634, 813, 820
TatI WGTACW 1 cut(s) 741
TfiI GAWTC 4 cut(s) 128, 143, 704, 876
Tru1I TTAA 2 cut(s) 546, 1089
Tru9I TTAA 2 cut(s) 546, 1089
TseI GCWGC 1 cut(s) 117
TspDTI ATGAA 5 cut(s) 156, 512, 614, 617, 717
Vha464I CTTAAG 1 cut(s) 545
VneI GTGCAC 1 cut(s) 518
VpaK11BI GGWCC 2 cut(s) 59, 910
XapI RAATTY 1 cut(s) 607
XceI RCATGY 1 cut(s) 1011
XmnI GAANNNNTTC 1 cut(s) 608
XspI CTAG 4 cut(s) 69, 587, 834, 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.