Rh1CG440900

exonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0008863
Physical Location & Seq
Forward (+)
69412842 .. 69414431
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG440900.1

Sequence Viewer

Length: 930 bp
ATGGGGATAGGGAAGGGAAGCGAATTGTTGGATGACTTTGGAGACAACGCAGTAATAAGAGGCATGCGCCTCGACAGACTGGCCAGTGAGGGCATTGCGAGAGTAGGGGTTGATGCCACTCCCTGGCTTGTGATCGTTCACCGTACACTTGAGGATCACCAAAAGAAAAATTATGAACTGTACTGGTTGACCGAGGAGATGGAAGTAAAGTTCTTTGTGGCTCCTTATGAAGCCGATGCCCAATTGACACACTTGGCAAGCAAGAAAATAATAGATGCCGTCATCACTGAGGATTCAGACCTTATAGCATTTGGATGTAAAAAAATTATCTATAACATTAATTTTGAAAAAGAAACGTGTGATTACTACTCATTTGATCGTTTAAAAGAAGTGAACATTGACTACAAAGACTTTTCACAAAAAAAGCTTCTAGAAATGGCAATAATGATAGGCTGCGATTATTTACCAAATTTGGCGGGCATAGGCATTGGTAAAGCTTACGATGAGATAATGGAGCAGAAACATTATGAGAATGTAATCGCCTGGTCGAAAAAAAAGCTTGTGCTTAGAACTGGGGTCGGGAATAAACAAGATACAATATTGAGGTCAGAGATTCTACAATATTTCCAAAGAGCAATTCTGGCGTTCACATATCAACAAGTTTATAATCCCAAATCTAAAACTTGTGAACGCTTATCTCATATGAGGTATGATAAGCTACAGAGTGACGTGGTGGCAGACATACCCAAGATGTTAGGACCACGTTTAAAGGACGGATCTGTTCATAATATTGCAATGGGTAGCAGACCTTCGAAGCTCGAGATAATTGATGTAGATAATCGGCCTGAAGAATATCCCGGACAGATAGTTAAGTATGGGCAGAATTCTTTGGAAAGATTTTTTTGTAATAAGAAAAGTCGAAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03430 map03430
Pfam Domains
Protein Families
XPG_I XPG_N

Protein Analysis

309

Amino Acids

35.6

Weight (kDa)

6.62

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XPG_I PF00867 69 - 153 1.8e-20 XPG I-region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 666
AccB7I CCANNNNNTGG 1 cut(s) 123
AciI CCGC 1 cut(s) 476
AclWI GGATC 2 cut(s) 162, 784
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 2 cut(s) 469, 883
AcuI CTGAAG 1 cut(s) 867
AfaI GTAC 2 cut(s) 145, 182
AfiI CCNNNNNNNGG 1 cut(s) 123
AflIII ACRYGT 1 cut(s) 356
AgsI TTSAA 1 cut(s) 347
AjiI CACGTC 1 cut(s) 730
AjnI CCWGG 2 cut(s) 122, 542
AjuI GAANNNNNNNTTGG 2 cut(s) 621, 653
AloI GAACNNNNNNTCC 2 cut(s) 194, 226
AluBI AGCT 5 cut(s) 427, 497, 559, 718, 817
AluI AGCT 5 cut(s) 427, 497, 559, 718, 817
Alw26I GTCTC 1 cut(s) 36
AlwI GGATC 2 cut(s) 162, 784
Ama87I CYCGRG 1 cut(s) 818
AoxI GGCC 2 cut(s) 81, 842
ApeKI GCWGC 1 cut(s) 453
ApoI RAATTY 2 cut(s) 469, 883
AseI ATTAAT 1 cut(s) 339
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 758
AsuC2I CCSGG 1 cut(s) 858
AsuHPI GGTGA 2 cut(s) 131, 149
AsuII TTCGAA 1 cut(s) 812
AvaI CYCGRG 1 cut(s) 818
AvaII GGWCC 1 cut(s) 758
BalI TGGCCA 1 cut(s) 83
BarI GAAGNNNNNNTAC 2 cut(s) 793, 825
BbvI GCAGC 1 cut(s) 440
BccI CCATC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 263
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciT130I CCWGG 2 cut(s) 124, 544
BcnI CCSGG 1 cut(s) 858
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 1 cut(s) 431
BfmI CTRYAG 1 cut(s) 719
BisI GCNGC 1 cut(s) 454
BlsI GCNGC 1 cut(s) 455
Bme1390I CCNGG 3 cut(s) 124, 544, 858
Bme18I GGWCC 1 cut(s) 758
BmeT110I CYCGRG 1 cut(s) 818
BmgBI CACGTC 1 cut(s) 730
BmgT120I GGNCC 1 cut(s) 758
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 3 cut(s) 124, 544, 858
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 3 cut(s) 103, 226, 265
BmuI ACTGGG 1 cut(s) 582
Bpu14I TTCGAA 1 cut(s) 812
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 858
BsaJI CCNNGG 2 cut(s) 122, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 4 cut(s) 84, 84, 188, 577
Bse3DI GCAATG 2 cut(s) 93, 801
BseBI CCWGG 2 cut(s) 124, 544
BseDI CCNNGG 2 cut(s) 122, 192
BseGI GGATG 2 cut(s) 37, 320
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMI GCAATG 2 cut(s) 93, 801
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 4 cut(s) 84, 84, 188, 577
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 440
BshFI GGCC 2 cut(s) 83, 844
BsiHKCI CYCGRG 1 cut(s) 818
BsiSI CCGG 1 cut(s) 858
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 36
BsnI GGCC 2 cut(s) 83, 844
BsoBI CYCGRG 1 cut(s) 818
Bsp119I TTCGAA 1 cut(s) 812
Bsp143I GATC 4 cut(s) 132, 154, 376, 776
BspACI CCGC 1 cut(s) 476
BspANI GGCC 2 cut(s) 83, 844
BspCNI CTCAG 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 2 cut(s) 162, 784
BspT104I TTCGAA 1 cut(s) 812
BsrDI GCAATG 2 cut(s) 93, 801
BsrI ACTGG 4 cut(s) 84, 84, 188, 577
BssECI CCNNGG 2 cut(s) 122, 192
BssMI GATC 4 cut(s) 132, 154, 376, 776
Bst2UI CCWGG 2 cut(s) 124, 544
Bst4CI ACNGT 2 cut(s) 143, 180
BstBI TTCGAA 1 cut(s) 812
BstC8I GCNNGC 3 cut(s) 65, 259, 478
BstDEI CTNAG 2 cut(s) 288, 566
BstF5I GGATG 2 cut(s) 37, 320
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 4 cut(s) 135, 157, 379, 779
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 4 cut(s) 132, 154, 376, 776
BstMWI GCNNNNNNNGC 1 cut(s) 641
BstNI CCWGG 2 cut(s) 124, 544
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 3 cut(s) 122, 542, 856
BstSFI CTRYAG 1 cut(s) 719
BstV1I GCAGC 1 cut(s) 440
BstX2I RGATCY 1 cut(s) 776
BstYI RGATCY 1 cut(s) 776
BsuRI GGCC 2 cut(s) 83, 844
BtrI CACGTC 1 cut(s) 730
BtsCI GGATG 2 cut(s) 37, 320
BtsIMutI CAGTG 2 cut(s) 91, 285
Cac8I GCNNGC 3 cut(s) 65, 259, 478
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 758
Csp6I GTAC 2 cut(s) 144, 181
CviAII CATG 1 cut(s) 64
CviQI GTAC 2 cut(s) 144, 181
DdeI CTNAG 2 cut(s) 288, 566
DpnI GATC 4 cut(s) 134, 156, 378, 778
DpnII GATC 4 cut(s) 132, 154, 376, 776
DraI TTTAAA 2 cut(s) 384, 768
EaeI YGGCCR 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 758
Eco57I CTGAAG 1 cut(s) 867
Eco88I CYCGRG 1 cut(s) 818
EcoRI GAATTC 1 cut(s) 883
EcoRII CCWGG 2 cut(s) 122, 542
FaeI CATG 1 cut(s) 67
FatI CATG 1 cut(s) 63
FauI CCCGC 1 cut(s) 469
FauNDI CATATG 1 cut(s) 702
Fnu4HI GCNGC 1 cut(s) 454
FokI GGATG 2 cut(s) 44, 327
Fsp4HI GCNGC 1 cut(s) 454
FspBI CTAG 1 cut(s) 431
GlaI GCGC 1 cut(s) 68
GluI GCNGC 1 cut(s) 454
HaeIII GGCC 2 cut(s) 83, 844
HapII CCGG 1 cut(s) 858
HhaI GCGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HindIII AAGCTT 3 cut(s) 425, 495, 557
HinfI GANTC 2 cut(s) 293, 613
HpaII CCGG 1 cut(s) 858
HphI GGTGA 2 cut(s) 131, 149
Hpy166II GTNNAC 6 cut(s) 139, 146, 189, 394, 648, 689
Hpy188I TCNGA 2 cut(s) 298, 610
Hpy188III TCNNGA 3 cut(s) 431, 580, 820
Hpy8I GTNNAC 6 cut(s) 139, 146, 189, 394, 648, 689
HpyAV CCTTC 2 cut(s) 7, 819
HpyCH4III ACNGT 2 cut(s) 143, 180
HpyCH4IV ACGT 3 cut(s) 356, 729, 763
HpyCH4V TGCA 1 cut(s) 794
HpyF10VI GCNNNNNNNGC 1 cut(s) 641
HpyF3I CTNAG 2 cut(s) 288, 566
HpySE526I ACGT 3 cut(s) 356, 729, 763
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 1 cut(s) 67
Kzo9I GATC 4 cut(s) 132, 154, 376, 776
LmnI GCTCC 2 cut(s) 226, 514
Lsp1109I GCAGC 1 cut(s) 440
LweI GCATC 3 cut(s) 103, 226, 265
MaeI CTAG 1 cut(s) 431
MaeII ACGT 3 cut(s) 356, 729, 763
MaeIII GTNAC 1 cut(s) 725
MalI GATC 4 cut(s) 134, 156, 378, 778
MboI GATC 4 cut(s) 132, 154, 376, 776
MboII GAAGA 1 cut(s) 860
MfeI CAATTG 1 cut(s) 242
MflI RGATCY 1 cut(s) 776
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 9 cut(s) 23, 169, 242, 324, 340, 469, 636, 825, 883
MluNI TGGCCA 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 8 cut(s) 53, 80, 82, 145, 187, 283, 597, 699
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MseI TTAA 4 cut(s) 339, 383, 767, 870
MslI CAYNNNNRTG 1 cut(s) 313
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 1 cut(s) 858
MspR9I CCNGG 3 cut(s) 124, 544, 858
MunI CAATTG 1 cut(s) 242
MvaI CCWGG 2 cut(s) 124, 544
MwoI GCNNNNNNNGC 1 cut(s) 641
NciI CCSGG 1 cut(s) 858
NdeI CATATG 1 cut(s) 702
NdeII GATC 4 cut(s) 132, 154, 376, 776
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 222
NmuCI GTSAC 1 cut(s) 725
NspI RCATGY 1 cut(s) 67
NspV TTCGAA 1 cut(s) 812
PaeI GCATGC 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 818
PfeI GAWTC 2 cut(s) 293, 613
PflMI CCANNNNNTGG 1 cut(s) 123
PfoI TCCNGGA 1 cut(s) 856
PkrI GCNGC 1 cut(s) 455
PshBI ATTAAT 1 cut(s) 339
PsiI TTATAA 1 cut(s) 666
Psp6I CCWGG 2 cut(s) 122, 542
PspGI CCWGG 2 cut(s) 122, 542
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 758
PsrI GAACNNNNNNTAC 2 cut(s) 386, 418
PsuI RGATCY 1 cut(s) 776
RsaI GTAC 2 cut(s) 145, 182
RsaNI GTAC 2 cut(s) 144, 181
RseI CAYNNNNRTG 1 cut(s) 313
SaqAI TTAA 4 cut(s) 339, 383, 767, 870
SatI GCNGC 1 cut(s) 454
Sau3AI GATC 4 cut(s) 132, 154, 376, 776
Sau96I GGNCC 1 cut(s) 758
ScrFI CCNGG 3 cut(s) 124, 544, 858
SfaNI GCATC 3 cut(s) 103, 226, 265
SfcI CTRYAG 1 cut(s) 719
Sfr274I CTCGAG 1 cut(s) 818
SfuI TTCGAA 1 cut(s) 812
SinI GGWCC 1 cut(s) 758
SlaI CTCGAG 1 cut(s) 818
SmiMI CAYNNNNRTG 1 cut(s) 313
SmlI CTYRAG 2 cut(s) 149, 818
SmoI CTYRAG 2 cut(s) 149, 818
SphI GCATGC 1 cut(s) 67
Sse9I AATT 9 cut(s) 23, 169, 242, 324, 340, 469, 636, 825, 883
SsiI CCGC 1 cut(s) 476
SspI AATATT 3 cut(s) 600, 623, 790
SspMI CTAG 1 cut(s) 431
StyD4I CCNGG 3 cut(s) 122, 542, 856
TaaI ACNGT 2 cut(s) 143, 180
TaiI ACGT 3 cut(s) 359, 732, 766
TaqI TCGA 5 cut(s) 72, 548, 812, 819, 919
TaqII GACCGA 1 cut(s) 206
TasI AATT 9 cut(s) 23, 169, 242, 324, 340, 469, 636, 825, 883
TatI WGTACW 1 cut(s) 180
TfiI GAWTC 2 cut(s) 293, 613
Tru1I TTAA 4 cut(s) 339, 383, 767, 870
Tru9I TTAA 4 cut(s) 339, 383, 767, 870
TscAI CASTG 2 cut(s) 91, 292
TseFI GTSAC 1 cut(s) 725
TseI GCWGC 1 cut(s) 453
Tsp45I GTSAC 1 cut(s) 725
TspDTI ATGAA 3 cut(s) 189, 243, 773
TspGWI ACGGA 1 cut(s) 789
TspRI CASTG 2 cut(s) 91, 292
Van91I CCANNNNNTGG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 758
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 2 cut(s) 469, 883
XbaI TCTAGA 1 cut(s) 430
XceI RCATGY 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 818
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.