Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014419.1

Orthogroup ID

OG0008863

Physical Location & Seq

Genomic Coordinates Forward (+)

10487 .. 12063

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014419.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgaagatggggataggaaagggaagcgaattgttgggtgactttggagacaacgcagtaataagaggcatgcgcctcgacagactgggcagtgagggcattacgagagtaggggttgatgctactccctggcttgtgaccgttcaggcgttcaccatacacttgaggatcaccaaaagaaaaattatggactccgatgcccaattgacacacttggcaagcaagaaaataatagacgccgtcatcaccaatgattcagaccttatagcattcggatgtaaaaaaattatctatcacattgattttgaagaagagacatgtgattattactcatttgatcgtttaaaagaagtgaacgatgcctacaaagatttttcgcaaaagaagcttctagaaatggcaataatgataggctgctattatttaccaaatttggcaggcataggcattggtaaagcttacgatgagataatgaagcataaacattatgagaatgtaattgcctggtcgaaaaaaaagctggtgcttagaactggggtagggaataaacaagatacaactttgaggacggagattctacaatgttttcaaacggcaattctggcgttcacatatcaacaagtttataattccgaatctaaaacttgtgaacgcttatctcatatgatatttaataatctacaggatgtcgtggtgagaaacataaccaggttgttaggaccacgtttgaaggacgaatctgttcataatattgcaatgggtaatagaccttcgaagctcgaggacattgatgtagataatcggcctgaacagtatcatggaaagacggttgagtatgggctaaattctttggaaagatttttttgtaataagagaagccgaaaagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

296

Amino Acids

33.9

Weight (kDa)

8.59

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36910 FvH4_6g02530 FvH4_7g04680
rosa_laevigata	RLG00000009071 RLG00000026067
rosa_multiflora	Rmu_sc0001753.1_g000028 Rmu_sc0005139.1_g000010 Rmu_sc0014419.1_g000003 Rmu_sc0014419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276940 Rroxscaffold_5G00387150 Rroxscaffold_7G00212230
rosa_rugosa	Rorug05G0542500
rosa_samantha	Rh1BG428500 Rh1CG440900 Rh1DG461300 Rh4BG445000 Rh4BG445100 Rh4CG462300 Rh4CG462400 Rh6CG048900 Rh6DG044600
rosa_wichuraiana	Rw4G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AclWI	GGATC	1 cut(s)	176
AcsI	RAATTY	2 cut(s)	430, 844
AcyI	GRCGYC	1 cut(s)	237
AflIII	ACRYGT	1 cut(s)	317
AgsI	TTSAA	3 cut(s)	308, 590, 730
AjnI	CCWGG	3 cut(s)	128, 503, 707
AluBI	AGCT	4 cut(s)	388, 458, 520, 778
AluI	AGCT	4 cut(s)	388, 458, 520, 778
Alw26I	GTCTC	2 cut(s)	42, 308
AlwI	GGATC	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	779
AoxI	GGCC	1 cut(s)	803
ApeKI	GCWGC	1 cut(s)	414
ApoI	RAATTY	2 cut(s)	430, 844
Asp700I	GAANNNNTTC	1 cut(s)	741
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	719
AsuHPI	GGTGA	5 cut(s)	50, 145, 163, 238, 706
AsuII	TTCGAA	1 cut(s)	773
AvaI	CYCGRG	1 cut(s)	779
AvaII	GGWCC	1 cut(s)	719
BarI	GAAGNNNNNNTAC	2 cut(s)	754, 786
BbvI	GCAGC	1 cut(s)	401
BceAI	ACGGC	2 cut(s)	224, 609
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	3 cut(s)	130, 505, 709
BcoDI	GTCTC	2 cut(s)	42, 308
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	680
BisI	GCNGC	1 cut(s)	415
BlsI	GCNGC	1 cut(s)	416
Bme1390I	CCNGG	3 cut(s)	130, 505, 709
Bme18I	GGWCC	1 cut(s)	719
BmeT110I	CYCGRG	1 cut(s)	779
BmgT120I	GGNCC	1 cut(s)	719
BmrFI	CCNGG	3 cut(s)	130, 505, 709
BmrI	ACTGGG	2 cut(s)	95, 543
BmsI	GCATC	3 cut(s)	109, 187, 349
BmuI	ACTGGG	2 cut(s)	95, 543
Bpu14I	TTCGAA	1 cut(s)	773
BpuEI	CTTGAG	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	90, 538
Bse3DI	GCAATG	1 cut(s)	762
BseBI	CCWGG	3 cut(s)	130, 505, 709
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	2 cut(s)	281, 691
BseMI	GCAATG	1 cut(s)	762
BseNI	ACTGG	2 cut(s)	90, 538
BseXI	GCAGC	1 cut(s)	401
BshFI	GGCC	1 cut(s)	805
BsiHKCI	CYCGRG	1 cut(s)	779
BsmAI	GTCTC	2 cut(s)	42, 308
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	805
BsoBI	CYCGRG	1 cut(s)	779
Bsp119I	TTCGAA	1 cut(s)	773
Bsp143I	GATC	2 cut(s)	168, 337
BspANI	GGCC	1 cut(s)	805
BspPI	GGATC	1 cut(s)	176
BspT104I	TTCGAA	1 cut(s)	773
BsrDI	GCAATG	1 cut(s)	762
BsrI	ACTGG	2 cut(s)	90, 538
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	2 cut(s)	168, 337
BssNI	GRCGYC	1 cut(s)	237
Bst2UI	CCWGG	3 cut(s)	130, 505, 709
Bst4CI	ACNGT	3 cut(s)	142, 813, 829
Bst6I	CTCTTC	1 cut(s)	306
BstACI	GRCGYC	1 cut(s)	237
BstBI	TTCGAA	1 cut(s)	773
BstC8I	GCNNGC	3 cut(s)	71, 220, 439
BstDEI	CTNAG	1 cut(s)	527
BstF5I	GGATG	2 cut(s)	281, 691
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	2 cut(s)	171, 340
BstMAI	GTCTC	2 cut(s)	42, 308
BstMBI	GATC	2 cut(s)	168, 337
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 385, 602
BstNI	CCWGG	3 cut(s)	130, 505, 709
BstNSI	RCATGY	2 cut(s)	73, 321
BstSCI	CCNGG	3 cut(s)	128, 503, 707
BstSFI	CTRYAG	1 cut(s)	680
BstV1I	GCAGC	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	805
BtsCI	GGATG	2 cut(s)	281, 691
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	3 cut(s)	71, 220, 439
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	719
CseI	GACGC	1 cut(s)	245
CsiI	ACCWGGT	1 cut(s)	707
CviAII	CATG	3 cut(s)	70, 318, 818
CviJI	RGCY	9 cut(s)	133, 388, 414, 458, 520, 778, 805, 841, 879
CviKI_1	RGCY	9 cut(s)	133, 388, 414, 458, 520, 778, 805, 841, 879
DdeI	CTNAG	1 cut(s)	527
DpnI	GATC	2 cut(s)	170, 339
DpnII	GATC	2 cut(s)	168, 337
DraI	TTTAAA	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	719
Eco88I	CYCGRG	1 cut(s)	779
EcoRII	CCWGG	3 cut(s)	128, 503, 707
FaeI	CATG	3 cut(s)	73, 321, 821
FatI	CATG	3 cut(s)	69, 317, 817
FauNDI	CATATG	1 cut(s)	663
Fnu4HI	GCNGC	1 cut(s)	415
FokI	GGATG	2 cut(s)	288, 698
Fsp4HI	GCNGC	1 cut(s)	415
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	805
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	73, 321, 821
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HindIII	AAGCTT	2 cut(s)	386, 456
HinfI	GANTC	5 cut(s)	191, 254, 574, 635, 737
HphI	GGTGA	5 cut(s)	50, 145, 163, 238, 706
Hpy166II	GTNNAC	4 cut(s)	153, 355, 609, 650
Hpy188I	TCNGA	4 cut(s)	196, 259, 275, 634
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	4 cut(s)	153, 355, 609, 650
HpyAV	CCTTC	2 cut(s)	724, 780
HpyCH4III	ACNGT	3 cut(s)	142, 813, 829
HpyCH4IV	ACGT	1 cut(s)	724
HpyCH4V	TGCA	1 cut(s)	755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 385, 602
HpyF3I	CTNAG	1 cut(s)	527
HpySE526I	ACGT	1 cut(s)	724
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	73, 321, 821
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	168, 337
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	3 cut(s)	109, 187, 349
MabI	ACCWGGT	1 cut(s)	707
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	724
MaeIII	GTNAC	2 cut(s)	38, 136
MalI	GATC	2 cut(s)	170, 339
MboI	GATC	2 cut(s)	168, 337
MboII	GAAGA	3 cut(s)	16, 320, 323
MfeI	CAATTG	1 cut(s)	203
MluCI	AATT	9 cut(s)	29, 183, 203, 285, 430, 498, 597, 628, 844
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	6 cut(s)	59, 86, 88, 159, 558, 775
MroXI	GAANNNNTTC	1 cut(s)	741
MseI	TTAA	2 cut(s)	344, 672
MslI	CAYNNNNRTG	1 cut(s)	274
MspR9I	CCNGG	3 cut(s)	130, 505, 709
MunI	CAATTG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	269
MvaI	CCWGG	3 cut(s)	130, 505, 709
MwoI	GCNNNNNNNGC	3 cut(s)	96, 385, 602
NdeI	CATATG	1 cut(s)	663
NdeII	GATC	2 cut(s)	168, 337
NlaIII	CATG	3 cut(s)	73, 321, 821
NmuCI	GTSAC	2 cut(s)	38, 136
NspI	RCATGY	2 cut(s)	73, 321
NspV	TTCGAA	1 cut(s)	773
PaeI	GCATGC	1 cut(s)	73
PaeR7I	CTCGAG	1 cut(s)	779
PciI	ACATGT	1 cut(s)	317
PctI	GAATGC	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	741
PfeI	GAWTC	4 cut(s)	254, 574, 635, 737
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	416
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PscI	ACATGT	1 cut(s)	317
PsiI	TTATAA	1 cut(s)	627
Psp6I	CCWGG	3 cut(s)	128, 503, 707
PspGI	CCWGG	3 cut(s)	128, 503, 707
PspPI	GGNCC	1 cut(s)	719
PspXI	VCTCGAGB	1 cut(s)	779
PsrI	GAACNNNNNNTAC	2 cut(s)	347, 379
PsyI	GACNNNGTC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	274
SaqAI	TTAA	2 cut(s)	344, 672
SatI	GCNGC	1 cut(s)	415
Sau3AI	GATC	2 cut(s)	168, 337
Sau96I	GGNCC	1 cut(s)	719
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	3 cut(s)	130, 505, 709
SetI	ASST	8 cut(s)	264, 390, 460, 522, 713, 727, 772, 780
SexAI	ACCWGGT	1 cut(s)	707
SfaNI	GCATC	3 cut(s)	109, 187, 349
SfcI	CTRYAG	1 cut(s)	680
Sfr274I	CTCGAG	1 cut(s)	779
SfuI	TTCGAA	1 cut(s)	773
SinI	GGWCC	1 cut(s)	719
SlaI	CTCGAG	1 cut(s)	779
SmiMI	CAYNNNNRTG	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	163, 779
SmoI	CTYRAG	2 cut(s)	163, 779
SphI	GCATGC	1 cut(s)	73
Sse9I	AATT	9 cut(s)	29, 183, 203, 285, 430, 498, 597, 628, 844
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	3 cut(s)	128, 503, 707
TaaI	ACNGT	3 cut(s)	142, 813, 829
TaiI	ACGT	1 cut(s)	727
TaqI	TCGA	4 cut(s)	78, 509, 773, 780
TasI	AATT	9 cut(s)	29, 183, 203, 285, 430, 498, 597, 628, 844
TfiI	GAWTC	4 cut(s)	254, 574, 635, 737
Tru1I	TTAA	2 cut(s)	344, 672
Tru9I	TTAA	2 cut(s)	344, 672
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	2 cut(s)	38, 136
TseI	GCWGC	1 cut(s)	414
Tsp45I	GTSAC	2 cut(s)	38, 136
TspDTI	ATGAA	3 cut(s)	17, 488, 734
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	1 cut(s)	97
Tth111I	GACNNNGTC	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	719
XapI	RAATTY	2 cut(s)	430, 844
XbaI	TCTAGA	1 cut(s)	391
XceI	RCATGY	2 cut(s)	73, 321
XhoI	CTCGAG	1 cut(s)	779
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.