Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008863

Physical Location & Seq

Genomic Coordinates Forward (+)

69312547 .. 69335054

Gene Structure 22508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG462400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTGTAAGCACTACTCATTTGACCGTTTAAAGGACCATCATTTATACGGAACATTTACGAAAAAGATGCTTCTGGAGATGTGTATAATGATTGGGTGTGACTACCTACCAAATTTGCAAGGGATAGGCATTCAGAAAGCTGGCGATGCTATAAAGGAATCGAAAACTTTCGCCAATATAATTCCTTATAAGAAGAATATCAAGCTTAGAATCGAGGCAGATAAGTTTGAAACAAATACGCCGAAAATTCTAGAAGAATTCAAGAAAGCAATTAAAGCTTTCACTTATCAACAAGTTTATGATCCCGATTCTCATACTTGTGAACGCTTATCTCATATAAATTATGCTGGCCTTCGTGAAGACGCAGCGGAGATTTTGAGACCATGTTTAAAGGACAAATCAGTTCATGCTATTGCAACAGGAAGTAGACCTTCTGAGATCAAGGAAGCTGATATAATAAAACCGAATATGGATGGAGGTAAAGAAATATGGACCTTAACTACCGGGCCGCATCTATTTGTGTTTGCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

177

Amino Acids

20.24

Weight (kDa)

8.5

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36910 FvH4_6g02530 FvH4_7g04680
rosa_laevigata	RLG00000009071 RLG00000026067
rosa_multiflora	Rmu_sc0001753.1_g000028 Rmu_sc0005139.1_g000010 Rmu_sc0014419.1_g000003 Rmu_sc0014419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276940 Rroxscaffold_5G00387150 Rroxscaffold_7G00212230
rosa_rugosa	Rorug05G0542500
rosa_samantha	Rh1BG428500 Rh1CG440900 Rh1DG461300 Rh4BG445000 Rh4BG445100 Rh4CG462300 Rh4CG462400 Rh6CG048900 Rh6DG044600
rosa_wichuraiana	Rw4G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	427
AciI	CCGC	2 cut(s)	368, 509
AclWI	GGATC	1 cut(s)	296
AcsI	RAATTY	3 cut(s)	112, 246, 257
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	230, 262
AluBI	AGCT	4 cut(s)	140, 205, 278, 449
AluI	AGCT	4 cut(s)	140, 205, 278, 449
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	1 cut(s)	296
AoxI	GGCC	2 cut(s)	349, 506
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	3 cut(s)	112, 246, 257
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	3 cut(s)	34, 492, 506
AsuC2I	CCSGG	1 cut(s)	505
AvaII	GGWCC	2 cut(s)	34, 492
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	2 cut(s)	45, 467
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BcnI	CCSGG	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	2 cut(s)	366, 509
BlsI	GCNGC	2 cut(s)	367, 510
Bme1390I	CCNGG	1 cut(s)	505
Bme18I	GGWCC	2 cut(s)	34, 492
BmgT120I	GGNCC	3 cut(s)	34, 492, 506
BmrFI	CCNGG	1 cut(s)	505
BmsI	GCATC	3 cut(s)	57, 136, 520
BpiI	GAAGAC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	505
BsaI	GGTCTC	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	426
BseXI	GCAGC	1 cut(s)	377
BshFI	GGCC	2 cut(s)	351, 508
BsiSI	CCGG	1 cut(s)	504
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	373
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	2 cut(s)	351, 508
Bso31I	GGTCTC	1 cut(s)	373
Bsp143I	GATC	2 cut(s)	301, 438
BspACI	CCGC	2 cut(s)	368, 509
BspANI	GGCC	2 cut(s)	351, 508
BspCNI	CTCAG	1 cut(s)	427
BspPI	GGATC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	373
BssMI	GATC	2 cut(s)	301, 438
Bst4CI	ACNGT	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	142, 349
BstDEI	CTNAG	2 cut(s)	206, 435
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	2 cut(s)	304, 441
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	2 cut(s)	301, 438
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 275
BstSCI	CCNGG	1 cut(s)	503
BstV1I	GCAGC	1 cut(s)	377
BstV2I	GAAGAC	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	351, 508
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	478
Cac8I	GCNNGC	2 cut(s)	142, 349
Cfr13I	GGNCC	3 cut(s)	34, 492, 506
CseI	GACGC	1 cut(s)	371
CviAII	CATG	2 cut(s)	384, 407
CviJI	RGCY	6 cut(s)	140, 205, 278, 351, 449, 508
CviKI_1	RGCY	6 cut(s)	140, 205, 278, 351, 449, 508
DdeI	CTNAG	2 cut(s)	206, 435
DpnI	GATC	2 cut(s)	303, 440
DpnII	GATC	2 cut(s)	301, 438
DraI	TTTAAA	2 cut(s)	30, 390
Eco31I	GGTCTC	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	34, 492
EcoRI	GAATTC	1 cut(s)	257
FaeI	CATG	2 cut(s)	387, 410
FalI	AAGNNNNNCTT	2 cut(s)	415, 447
FatI	CATG	2 cut(s)	383, 406
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	366, 509
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	2 cut(s)	366, 509
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	2 cut(s)	366, 509
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	351, 508
HapII	CCGG	1 cut(s)	504
HgaI	GACGC	1 cut(s)	371
Hin1II	CATG	2 cut(s)	387, 410
HindIII	AAGCTT	2 cut(s)	203, 276
HinfI	GANTC	3 cut(s)	158, 210, 308
HpaII	CCGG	1 cut(s)	504
Hpy166II	GTNNAC	2 cut(s)	323, 428
Hpy188I	TCNGA	2 cut(s)	135, 436
Hpy188III	TCNNGA	5 cut(s)	74, 251, 262, 305, 356
Hpy8I	GTNNAC	2 cut(s)	323, 428
HpyAV	CCTTC	2 cut(s)	362, 441
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	118, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 275
HpyF3I	CTNAG	2 cut(s)	206, 435
Hsp92II	CATG	2 cut(s)	387, 410
Kzo9I	GATC	2 cut(s)	301, 438
LpnPI	CCDG	5 cut(s)	59, 126, 333, 405, 517
Lsp1109I	GCAGC	1 cut(s)	377
LweI	GCATC	3 cut(s)	57, 136, 520
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	2 cut(s)	303, 440
MboI	GATC	2 cut(s)	301, 438
MboII	GAAGA	3 cut(s)	205, 266, 371
MluCI	AATT	6 cut(s)	112, 180, 246, 257, 270, 340
MnlI	CCTC	2 cut(s)	208, 470
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	5 cut(s)	29, 273, 389, 497, 532
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	1 cut(s)	505
Mva1269I	GAATGC	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	146, 275
NciI	CCSGG	1 cut(s)	505
NdeII	GATC	2 cut(s)	301, 438
NlaIII	CATG	2 cut(s)	387, 410
NmuCI	GTSAC	1 cut(s)	98
PctI	GAATGC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	3 cut(s)	158, 210, 308
PkrI	GCNGC	2 cut(s)	367, 510
PsiI	TTATAA	1 cut(s)	189
PspPI	GGNCC	3 cut(s)	34, 492, 506
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	5 cut(s)	29, 273, 389, 497, 532
SatI	GCNGC	2 cut(s)	366, 509
Sau3AI	GATC	2 cut(s)	301, 438
Sau96I	GGNCC	3 cut(s)	34, 492, 506
ScrFI	CCNGG	1 cut(s)	505
SetI	ASST	8 cut(s)	108, 142, 207, 280, 433, 451, 481, 497
SfaNI	GCATC	3 cut(s)	57, 136, 520
SinI	GGWCC	2 cut(s)	34, 492
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	6 cut(s)	112, 180, 246, 257, 270, 340
SsiI	CCGC	2 cut(s)	368, 509
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	503
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	161, 213
TasI	AATT	6 cut(s)	112, 180, 246, 257, 270, 340
TauI	GCSGC	1 cut(s)	511
TfiI	GAWTC	3 cut(s)	158, 210, 308
Tru1I	TTAA	5 cut(s)	29, 273, 389, 497, 532
Tru9I	TTAA	5 cut(s)	29, 273, 389, 497, 532
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	395
TspGWI	ACGGA	1 cut(s)	63
VpaK11BI	GGWCC	2 cut(s)	34, 492
XapI	RAATTY	3 cut(s)	112, 246, 257
XbaI	TCTAGA	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.