No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g36910 FvH4_6g02530 FvH4_7g04680 |
| rosa_laevigata | RLG00000009071 RLG00000026067 |
| rosa_multiflora | Rmu_sc0001753.1_g000028 Rmu_sc0005139.1_g000010 Rmu_sc0014419.1_g000003 Rmu_sc0014419.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00276940 Rroxscaffold_5G00387150 Rroxscaffold_7G00212230 |
| rosa_rugosa | Rorug05G0542500 |
| rosa_samantha | Rh1BG428500 Rh1CG440900 Rh1DG461300 Rh4BG445000 Rh4BG445100 Rh4CG462300 Rh4CG462400 Rh6CG048900 Rh6DG044600 |
| rosa_wichuraiana | Rw4G037290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 207 |
| AcsI | RAATTY | 2 cut(s) | 89, 319 |
| AgsI | TTSAA | 3 cut(s) | 39, 95, 254 |
| AluBI | AGCT | 3 cut(s) | 272, 373, 421 |
| AluI | AGCT | 3 cut(s) | 272, 373, 421 |
| ApoI | RAATTY | 2 cut(s) | 89, 319 |
| AspS9I | GGNCC | 1 cut(s) | 130 |
| AvaII | GGWCC | 1 cut(s) | 130 |
| BccI | CCATC | 3 cut(s) | 141, 338, 378 |
| BglII | AGATCT | 1 cut(s) | 16 |
| Bme18I | GGWCC | 1 cut(s) | 130 |
| BmgT120I | GGNCC | 1 cut(s) | 130 |
| BmiI | GGNNCC | 2 cut(s) | 60, 131 |
| BmsI | GCATC | 1 cut(s) | 338 |
| BseGI | GGATG | 2 cut(s) | 193, 436 |
| BseMII | CTCAG | 1 cut(s) | 27 |
| Bsh1236I | CGCG | 1 cut(s) | 207 |
| BslFI | GGGAC | 1 cut(s) | 143 |
| BsmFI | GGGAC | 1 cut(s) | 143 |
| Bsp143I | GATC | 1 cut(s) | 16 |
| Bsp68I | TCGCGA | 1 cut(s) | 207 |
| BspCNI | CTCAG | 1 cut(s) | 26 |
| BspFNI | CGCG | 1 cut(s) | 207 |
| BspLI | GGNNCC | 2 cut(s) | 60, 131 |
| BssMI | GATC | 1 cut(s) | 16 |
| Bst4CI | ACNGT | 1 cut(s) | 108 |
| Bst6I | CTCTTC | 1 cut(s) | 153 |
| BstC8I | GCNNGC | 2 cut(s) | 229, 419 |
| BstDEI | CTNAG | 3 cut(s) | 13, 215, 350 |
| BstF5I | GGATG | 2 cut(s) | 193, 436 |
| BstFNI | CGCG | 1 cut(s) | 207 |
| BstKTI | GATC | 1 cut(s) | 19 |
| BstMBI | GATC | 1 cut(s) | 16 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 204, 418 |
| BstUI | CGCG | 1 cut(s) | 207 |
| BstX2I | RGATCY | 1 cut(s) | 16 |
| BstYI | RGATCY | 1 cut(s) | 16 |
| BtgZI | GCGATG | 1 cut(s) | 195 |
| BtsCI | GGATG | 2 cut(s) | 193, 436 |
| BtuMI | TCGCGA | 1 cut(s) | 207 |
| Cac8I | GCNNGC | 2 cut(s) | 229, 419 |
| Cfr13I | GGNCC | 1 cut(s) | 130 |
| CviAII | CATG | 2 cut(s) | 156, 413 |
| CviJI | RGCY | 5 cut(s) | 26, 61, 272, 373, 421 |
| CviKI_1 | RGCY | 5 cut(s) | 26, 61, 272, 373, 421 |
| DdeI | CTNAG | 3 cut(s) | 13, 215, 350 |
| DpnI | GATC | 1 cut(s) | 18 |
| DpnII | GATC | 1 cut(s) | 16 |
| Eam1104I | CTCTTC | 1 cut(s) | 153 |
| EarI | CTCTTC | 1 cut(s) | 153 |
| Eco47I | GGWCC | 1 cut(s) | 130 |
| EcoT22I | ATGCAT | 1 cut(s) | 331 |
| FaeI | CATG | 2 cut(s) | 159, 416 |
| FaqI | GGGAC | 1 cut(s) | 143 |
| FatI | CATG | 2 cut(s) | 155, 412 |
| FokI | GGATG | 1 cut(s) | 200 |
| Hin1II | CATG | 2 cut(s) | 159, 416 |
| HindIII | AAGCTT | 1 cut(s) | 270 |
| HinfI | GANTC | 4 cut(s) | 11, 209, 337, 388 |
| Hpy188I | TCNGA | 3 cut(s) | 16, 235, 266 |
| Hpy188III | TCNNGA | 2 cut(s) | 206, 341 |
| HpyAV | CCTTC | 2 cut(s) | 118, 298 |
| HpyCH4III | ACNGT | 1 cut(s) | 108 |
| HpyCH4V | TGCA | 2 cut(s) | 329, 397 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 204, 418 |
| HpyF3I | CTNAG | 3 cut(s) | 13, 215, 350 |
| Hsp92II | CATG | 2 cut(s) | 159, 416 |
| Kzo9I | GATC | 1 cut(s) | 16 |
| LmnI | GCTCC | 1 cut(s) | 58 |
| LpnPI | CCDG | 1 cut(s) | 75 |
| LweI | GCATC | 1 cut(s) | 338 |
| MaeIII | GTNAC | 1 cut(s) | 275 |
| MalI | GATC | 1 cut(s) | 18 |
| MboI | GATC | 1 cut(s) | 16 |
| MboII | GAAGA | 1 cut(s) | 140 |
| MflI | RGATCY | 1 cut(s) | 16 |
| MluCI | AATT | 5 cut(s) | 89, 281, 309, 319, 354 |
| MlyI | GAGTC | 1 cut(s) | 5 |
| MmeI | TCCRAC | 1 cut(s) | 101 |
| MnlI | CCTC | 4 cut(s) | 25, 156, 212, 213 |
| Mph1103I | ATGCAT | 1 cut(s) | 331 |
| MseI | TTAA | 2 cut(s) | 299, 324 |
| MvnI | CGCG | 1 cut(s) | 207 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 204, 418 |
| NdeII | GATC | 1 cut(s) | 16 |
| NlaIII | CATG | 2 cut(s) | 159, 416 |
| NlaIV | GGNNCC | 2 cut(s) | 60, 131 |
| NmuCI | GTSAC | 1 cut(s) | 275 |
| NruI | TCGCGA | 1 cut(s) | 207 |
| NsiI | ATGCAT | 1 cut(s) | 331 |
| PfeI | GAWTC | 3 cut(s) | 209, 337, 388 |
| PleI | GAGTC | 1 cut(s) | 5 |
| PpsI | GAGTC | 1 cut(s) | 5 |
| PspN4I | GGNNCC | 2 cut(s) | 60, 131 |
| PspPI | GGNCC | 1 cut(s) | 130 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 152, 184 |
| PsuI | RGATCY | 1 cut(s) | 16 |
| RruI | TCGCGA | 1 cut(s) | 207 |
| SaqAI | TTAA | 2 cut(s) | 299, 324 |
| Sau3AI | GATC | 1 cut(s) | 16 |
| Sau96I | GGNCC | 1 cut(s) | 130 |
| SchI | GAGTC | 1 cut(s) | 5 |
| SetI | ASST | 5 cut(s) | 36, 262, 274, 375, 423 |
| SfaNI | GCATC | 1 cut(s) | 338 |
| SinI | GGWCC | 1 cut(s) | 130 |
| Sse9I | AATT | 5 cut(s) | 89, 281, 309, 319, 354 |
| TaaI | ACNGT | 1 cut(s) | 108 |
| TasI | AATT | 5 cut(s) | 89, 281, 309, 319, 354 |
| TfiI | GAWTC | 3 cut(s) | 209, 337, 388 |
| Tru1I | TTAA | 2 cut(s) | 299, 324 |
| Tru9I | TTAA | 2 cut(s) | 299, 324 |
| TseFI | GTSAC | 1 cut(s) | 275 |
| Tsp45I | GTSAC | 1 cut(s) | 275 |
| TspDTI | ATGAA | 1 cut(s) | 102 |
| VpaK11BI | GGWCC | 1 cut(s) | 130 |
| XapI | RAATTY | 2 cut(s) | 89, 319 |
| Zsp2I | ATGCAT | 1 cut(s) | 331 |