FvH4_6g02530

exonuclease

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
1464355 .. 1468539
4185 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02530.t1

Sequence Viewer

Length: 1422 bp
ATGGGGATAGGGAAAGGGACCAAGGAATTGTTTGAGGCTTTTGGAAACAAGGCAGTAAGAATAGCCTTTCCTCTCAACAAACTGGTTGACGAGGGCATTACCAAAGTGGGAGTTGATGCAACTCCTTGGCTTGTCGCCACTTATTATAAACTTGAGCCTCACCAACAGAGTGATCTAAAACTGCAGGCAGAACTTTTTAAAAAGGATTGCCATGATAGGATTAAAGTGCTAAGGAAGAATAAACTTGAACCGGTTTTGGTATTTGATGGAAACGCGCCACCATTAAAGATCCAAATAGTGGAGCTGAGGGCAGCCATAAGCGAGGCAAAAAAGAACCAGTGTGCAGTTGCTATTCCAAACTACAAGGATCCAGAAGTTAGATGGATTCCTGACTTCTTTGAAACAATCAAATGGATGAAGCACGAGATCGAAGTAGAGTTCATTGTGGCCCCCTATGAGGCCGACGCGCAACTGACTCACTTGGCAACCACAGGTTATGTACATGCCGTCCTCACTAAAGATTCAGACCTTATAGCGTTTGGATGTGAAAAAATTCTCTATAACACTGATTTTACAGAGGCAACATGTGATTATTACTCTTTTGCTCGTTTAACACGAATGAACTCCGACTACGAAGCCTTTTCCAAAAAGAAGCTTTTGGAAATGTTAATAATAGTCGGTTGTGATTATATGCCAAATGTAATCATGTACGAGAAGAATCTGAAGGTTACAAATGGAAAGGGGAAAACCCAAAATTCAACTTCGAAGACGGAGATTCTGCAACATTTTGAGAGGGCTATTCTAGCGTTCACATTTCAGCAGGTTTATGATCCGACATCTAAAACTTGTAAACGACTATCTCAGATAGACGAAGGGTATGATGAGCTCCAGCTTGACGTGGTGAACACAATAAAAGGTTTTTTAGGACCATATTTGAAGGAAGAGTCTGTTCATAAAATTGCTACGGGTGTGACAGAATCGATAATAGCTAGCACTGATATAGATACACGGCCTGAAGCAGAGATACAGTCGATGCAACAGTCAGCTAGCCCAAGAGCCCCAAAATTAACTGTTGTGGCTGCATTTGGTGATACTTCCAGAGGTACTGTTGTTATTTCAAACACTGGTACTCTAACAGACAATTCTTCATCAAAACCTGTTTCTCAAGTTGGTACTGTGCCTCAACCAACTGTTATGCCTACCATTCCTGGTGTTGCTTCTCCTATTGGATGCACTATGCATTACATGCCTAGTACTGAGTGTATGATGTATGTGTATGATAAGAATCTCAAGGGAGGAAGAAAGGTTCTAAAGAAGTTCCTCGTGAAGAAGAGCATCGAGCTCAAGCAAGGAAAGCACAAAGGTAAGAAGAAAAGAAAATCTTCTAAGCCTGGTTCTGCTGCTCAAGCTTCAATTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

474

Amino Acids

52.73

Weight (kDa)

8.93

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XPG_N PF00752 34 - 107 3.9e-06 XPG N-terminal domain
XPG_I PF00867 145 - 229 3.6e-18 XPG I-region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 811
AccB7I CCANNNNNTGG 1 cut(s) 298
AccII CGCG 2 cut(s) 275, 467
AclWI GGATC 4 cut(s) 283, 362, 375, 824
AcsI RAATTY 2 cut(s) 552, 754
AcuI CTGAAG 2 cut(s) 743, 1035
AfaI GTAC 6 cut(s) 501, 710, 1105, 1129, 1174, 1255
AfiI CCNNNNNNNGG 2 cut(s) 298, 457
AflIII ACRYGT 1 cut(s) 584
AgeI ACCGGT 1 cut(s) 250
AgsI TTSAA 6 cut(s) 248, 401, 759, 937, 1119, 1413
AjiI CACGTC 1 cut(s) 898
AjnI CCWGG 2 cut(s) 1207, 1390
AloI GAACNNNNNNTCC 2 cut(s) 1290, 1322
AluBI AGCT 8 cut(s) 304, 655, 886, 892, 989, 1046, 1342, 1409
AluI AGCT 8 cut(s) 304, 655, 886, 892, 989, 1046, 1342, 1409
Alw21I GWGCWC 2 cut(s) 888, 1344
AlwI GGATC 4 cut(s) 283, 362, 375, 824
AoxI GGCC 3 cut(s) 447, 459, 1010
ApeKI GCWGC 3 cut(s) 311, 1079, 1400
ApoI RAATTY 2 cut(s) 552, 754
AsiGI ACCGGT 1 cut(s) 250
Asp700I GAANNNNTTC 2 cut(s) 552, 1381
AspLEI GCGC 2 cut(s) 277, 469
AspS9I GGNCC 3 cut(s) 18, 448, 926
AsuHPI GGTGA 3 cut(s) 152, 913, 1100
AsuII TTCGAA 1 cut(s) 764
AsuNHI GCTAGC 2 cut(s) 989, 1046
AvaII GGWCC 2 cut(s) 18, 926
BaeI ACNNNNGTAYC 2 cut(s) 1095, 1128
BamHI GGATCC 1 cut(s) 367
BanII GRGCYC 3 cut(s) 888, 1060, 1344
BarI GAAGNNNNNNTAC 2 cut(s) 1008, 1040
BauI CACGAG 2 cut(s) 422, 1322
BbsI GAAGAC 1 cut(s) 773
Bbv12I GWGCWC 2 cut(s) 888, 1344
BbvCI CCTCAGC 1 cut(s) 305
BbvI GCAGC 3 cut(s) 323, 1066, 1387
BccI CCATC 2 cut(s) 260, 375
BceAI ACGGC 2 cut(s) 491, 1025
BciT130I CCWGG 2 cut(s) 1209, 1392
BfaI CTAG 4 cut(s) 803, 990, 1047, 1251
BfmI CTRYAG 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 811
BisI GCNGC 3 cut(s) 312, 1080, 1401
BlsI GCNGC 3 cut(s) 313, 1081, 1402
BmcAI AGTACT 1 cut(s) 1255
Bme1390I CCNGG 2 cut(s) 1209, 1392
Bme18I GGWCC 2 cut(s) 18, 926
BmgBI CACGTC 1 cut(s) 898
BmgT120I GGNCC 3 cut(s) 18, 448, 926
BmiI GGNNCC 3 cut(s) 19, 369, 450
BmrFI CCNGG 2 cut(s) 1209, 1392
BmsI GCATC 4 cut(s) 106, 1023, 1220, 1344
BmtI GCTAGC 2 cut(s) 993, 1050
BpiI GAAGAC 1 cut(s) 773
BpmI CTGGAG 1 cut(s) 872
Bpu10I CCTNAGC 2 cut(s) 230, 305
Bpu14I TTCGAA 1 cut(s) 764
BpuEI CTTGAG 5 cut(s) 173, 1149, 1274, 1328, 1389
Bsa29I ATCGAT 1 cut(s) 980
BsaBI GATNNNNATC 1 cut(s) 1284
BsaJI CCNNGG 2 cut(s) 21, 125
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 457
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 3 cut(s) 87, 337, 1129
Bse8I GATNNNNATC 1 cut(s) 1284
BseBI CCWGG 2 cut(s) 1209, 1392
BseCI ATCGAT 1 cut(s) 980
BseDI CCNNGG 2 cut(s) 21, 125
BseGI GGATG 3 cut(s) 420, 548, 1235
BseJI GATNNNNATC 1 cut(s) 1284
BseLI CCNNNNNNNGG 2 cut(s) 298, 457
BseMII CTCAG 3 cut(s) 296, 875, 1248
BseNI ACTGG 3 cut(s) 87, 337, 1129
BseXI GCAGC 3 cut(s) 323, 1066, 1387
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 2 cut(s) 275, 467
BshFI GGCC 3 cut(s) 449, 461, 1012
BshTI ACCGGT 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 980
BsiHKAI GWGCWC 2 cut(s) 888, 1344
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 2 cut(s) 298, 457
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 3 cut(s) 449, 461, 1012
Bsp119I TTCGAA 1 cut(s) 764
Bsp1286I GDGCHC 3 cut(s) 888, 1060, 1344
Bsp1407I TGTACA 1 cut(s) 499
Bsp143I GATC 5 cut(s) 172, 288, 367, 426, 829
BspANI GGCC 3 cut(s) 449, 461, 1012
BspCNI CTCAG 3 cut(s) 297, 874, 1249
BspDI ATCGAT 1 cut(s) 980
BspFNI CGCG 2 cut(s) 275, 467
BspLI GGNNCC 3 cut(s) 19, 369, 450
BspMAI CTGCAG 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 811
BspOI GCTAGC 2 cut(s) 993, 1050
BspPI GGATC 4 cut(s) 283, 362, 375, 824
BspQI GCTCTTC 1 cut(s) 1325
BspT104I TTCGAA 1 cut(s) 764
BsrFI RCCGGY 1 cut(s) 250
BsrGI TGTACA 1 cut(s) 499
BsrI ACTGG 3 cut(s) 87, 337, 1129
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 21, 125
BssMI GATC 5 cut(s) 172, 288, 367, 426, 829
BssSI CACGAG 2 cut(s) 422, 1322
BssT1I CCWWGG 2 cut(s) 21, 125
Bst2BI CACGAG 2 cut(s) 422, 1322
Bst2UI CCWGG 2 cut(s) 1209, 1392
Bst4CI ACNGT 6 cut(s) 1029, 1041, 1072, 1108, 1177, 1192
Bst6I CTCTTC 2 cut(s) 936, 1325
BstAPI GCANNNNNTGC 1 cut(s) 1246
BstAUI TGTACA 1 cut(s) 499
BstBI TTCGAA 1 cut(s) 764
BstC8I GCNNGC 3 cut(s) 186, 991, 1048
BstDEI CTNAG 5 cut(s) 230, 305, 861, 1257, 1386
BstF5I GGATG 3 cut(s) 420, 548, 1235
BstFNI CGCG 2 cut(s) 275, 467
BstHHI GCGC 2 cut(s) 277, 469
BstKTI GATC 5 cut(s) 175, 291, 370, 429, 832
BstMBI GATC 5 cut(s) 172, 288, 367, 426, 829
BstMWI GCNNNNNNNGC 4 cut(s) 803, 1246, 1354, 1406
BstNI CCWGG 2 cut(s) 1209, 1392
BstNSI RCATGY 3 cut(s) 506, 588, 1249
BstSCI CCNGG 2 cut(s) 1207, 1390
BstSFI CTRYAG 1 cut(s) 182
BstUI CGCG 2 cut(s) 275, 467
BstV1I GCAGC 3 cut(s) 323, 1066, 1387
BstV2I GAAGAC 1 cut(s) 773
BstX2I RGATCY 2 cut(s) 288, 367
BstYI RGATCY 2 cut(s) 288, 367
Bsu15I ATCGAT 1 cut(s) 980
BsuRI GGCC 3 cut(s) 449, 461, 1012
BsuTUI ATCGAT 1 cut(s) 980
BtrI CACGTC 1 cut(s) 898
BtsCI GGATG 3 cut(s) 420, 548, 1235
BtsIMutI CAGTG 4 cut(s) 344, 564, 993, 1122
BveI ACCTGC 1 cut(s) 811
Cac8I GCNNGC 3 cut(s) 186, 991, 1048
CfoI GCGC 2 cut(s) 277, 469
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 3 cut(s) 18, 448, 926
ClaI ATCGAT 1 cut(s) 980
CseI GACGC 1 cut(s) 473
Csp6I GTAC 6 cut(s) 500, 709, 1104, 1128, 1173, 1254
CspAI ACCGGT 1 cut(s) 250
CviAII CATG 5 cut(s) 212, 503, 585, 706, 1246
CviQI GTAC 6 cut(s) 500, 709, 1104, 1128, 1173, 1254
DdeI CTNAG 5 cut(s) 230, 305, 861, 1257, 1386
DpnI GATC 5 cut(s) 174, 290, 369, 428, 831
DpnII GATC 5 cut(s) 172, 288, 367, 426, 829
DraI TTTAAA 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 936, 1325
EarI CTCTTC 2 cut(s) 936, 1325
Ecl136II GAGCTC 2 cut(s) 886, 1342
Eco130I CCWWGG 2 cut(s) 21, 125
Eco24I GRGCYC 3 cut(s) 888, 1060, 1344
Eco47I GGWCC 2 cut(s) 18, 926
Eco53kI GAGCTC 2 cut(s) 886, 1342
Eco57I CTGAAG 2 cut(s) 743, 1035
EcoICRI GAGCTC 2 cut(s) 886, 1342
EcoRII CCWGG 2 cut(s) 1207, 1390
EcoT14I CCWWGG 2 cut(s) 21, 125
EcoT22I ATGCAT 1 cut(s) 1242
EcoT38I GRGCYC 3 cut(s) 888, 1060, 1344
ErhI CCWWGG 2 cut(s) 21, 125
FaeI CATG 5 cut(s) 215, 506, 588, 709, 1249
FalI AAGNNNNNCTT 2 cut(s) 1366, 1398
FaqI GGGAC 1 cut(s) 31
FatI CATG 5 cut(s) 211, 502, 584, 705, 1245
Fnu4HI GCNGC 3 cut(s) 312, 1080, 1401
FokI GGATG 3 cut(s) 427, 555, 1242
FriOI GRGCYC 3 cut(s) 888, 1060, 1344
Fsp4HI GCNGC 3 cut(s) 312, 1080, 1401
FspBI CTAG 4 cut(s) 803, 990, 1047, 1251
GlaI GCGC 2 cut(s) 276, 468
GluI GCNGC 3 cut(s) 312, 1080, 1401
GsuI CTGGAG 1 cut(s) 872
HaeIII GGCC 3 cut(s) 449, 461, 1012
HapII CCGG 1 cut(s) 251
HgaI GACGC 1 cut(s) 473
HhaI GCGC 2 cut(s) 277, 469
Hin1II CATG 5 cut(s) 215, 506, 588, 709, 1249
Hin6I GCGC 2 cut(s) 275, 467
HinP1I GCGC 2 cut(s) 275, 467
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 2 cut(s) 653, 1407
HinfI GANTC 8 cut(s) 385, 475, 521, 718, 775, 944, 977, 1285
HpaII CCGG 1 cut(s) 251
HphI GGTGA 3 cut(s) 152, 913, 1100
Hpy166II GTNNAC 4 cut(s) 88, 810, 851, 904
Hpy188I TCNGA 5 cut(s) 526, 628, 723, 834, 864
Hpy188III TCNNGA 4 cut(s) 371, 389, 1098, 1324
Hpy8I GTNNAC 4 cut(s) 88, 810, 851, 904
Hpy99I CGWCG 1 cut(s) 467
HpyAV CCTTC 3 cut(s) 718, 866, 931
HpyCH4III ACNGT 6 cut(s) 1029, 1041, 1072, 1108, 1177, 1192
HpyCH4IV ACGT 1 cut(s) 897
HpyCH4V TGCA 8 cut(s) 119, 184, 344, 781, 1036, 1082, 1233, 1240
HpyF10VI GCNNNNNNNGC 4 cut(s) 803, 1246, 1354, 1406
HpyF3I CTNAG 5 cut(s) 230, 305, 861, 1257, 1386
HpySE526I ACGT 1 cut(s) 897
Hsp92II CATG 5 cut(s) 215, 506, 588, 709, 1249
HspAI GCGC 2 cut(s) 275, 467
Kzo9I GATC 5 cut(s) 172, 288, 367, 426, 829
LguI GCTCTTC 1 cut(s) 1325
LmnI GCTCC 2 cut(s) 301, 891
Lsp1109I GCAGC 3 cut(s) 323, 1066, 1387
LweI GCATC 4 cut(s) 106, 1023, 1220, 1344
MaeI CTAG 4 cut(s) 803, 990, 1047, 1251
MaeII ACGT 1 cut(s) 897
MaeIII GTNAC 2 cut(s) 727, 970
MalI GATC 5 cut(s) 174, 290, 369, 428, 831
MboI GATC 5 cut(s) 172, 288, 367, 426, 829
MfeI CAATTG 1 cut(s) 1413
MflI RGATCY 2 cut(s) 288, 367
MhlI GDGCHC 3 cut(s) 888, 1060, 1344
MluCI AATT 7 cut(s) 26, 552, 754, 957, 1064, 1141, 1413
MlyI GAGTC 2 cut(s) 469, 953
MmeI TCCRAC 2 cut(s) 651, 857
Mph1103I ATGCAT 1 cut(s) 1242
MroXI GAANNNNTTC 2 cut(s) 552, 1381
MseI TTAA 6 cut(s) 198, 222, 284, 611, 668, 1067
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 2 cut(s) 1209, 1392
MunI CAATTG 1 cut(s) 1413
MvaI CCWGG 2 cut(s) 1209, 1392
MvnI CGCG 2 cut(s) 275, 467
MwoI GCNNNNNNNGC 4 cut(s) 803, 1246, 1354, 1406
NdeII GATC 5 cut(s) 172, 288, 367, 426, 829
NheI GCTAGC 2 cut(s) 989, 1046
NlaIII CATG 5 cut(s) 215, 506, 588, 709, 1249
NlaIV GGNNCC 3 cut(s) 19, 369, 450
NmuCI GTSAC 1 cut(s) 970
NsiI ATGCAT 1 cut(s) 1242
NspI RCATGY 3 cut(s) 506, 588, 1249
NspV TTCGAA 1 cut(s) 764
PciI ACATGT 1 cut(s) 584
PciSI GCTCTTC 1 cut(s) 1325
PcsI WCGNNNNNNNCGW 1 cut(s) 613
PdmI GAANNNNTTC 2 cut(s) 552, 1381
PfeI GAWTC 6 cut(s) 385, 521, 718, 775, 977, 1285
PflMI CCANNNNNTGG 1 cut(s) 298
PinAI ACCGGT 1 cut(s) 250
PkrI GCNGC 3 cut(s) 313, 1081, 1402
PleI GAGTC 2 cut(s) 469, 952
PpsI GAGTC 2 cut(s) 469, 952
PscI ACATGT 1 cut(s) 584
PsiI TTATAA 1 cut(s) 147
Psp124BI GAGCTC 2 cut(s) 888, 1344
Psp6I CCWGG 2 cut(s) 1207, 1390
PspGI CCWGG 2 cut(s) 1207, 1390
PspN4I GGNNCC 3 cut(s) 19, 369, 450
PspPI GGNCC 3 cut(s) 18, 448, 926
PsrI GAACNNNNNNTAC 2 cut(s) 614, 646
PstI CTGCAG 1 cut(s) 186
PsuI RGATCY 2 cut(s) 288, 367
RsaI GTAC 6 cut(s) 501, 710, 1105, 1129, 1174, 1255
RsaNI GTAC 6 cut(s) 500, 709, 1104, 1128, 1173, 1254
SacI GAGCTC 2 cut(s) 888, 1344
SapI GCTCTTC 1 cut(s) 1325
SaqAI TTAA 6 cut(s) 198, 222, 284, 611, 668, 1067
SatI GCNGC 3 cut(s) 312, 1080, 1401
Sau3AI GATC 5 cut(s) 172, 288, 367, 426, 829
Sau96I GGNCC 3 cut(s) 18, 448, 926
ScaI AGTACT 1 cut(s) 1255
SchI GAGTC 2 cut(s) 469, 953
ScrFI CCNGG 2 cut(s) 1209, 1392
SduI GDGCHC 3 cut(s) 888, 1060, 1344
SfaNI GCATC 4 cut(s) 106, 1023, 1220, 1344
SfcI CTRYAG 1 cut(s) 182
SfuI TTCGAA 1 cut(s) 764
SinI GGWCC 2 cut(s) 18, 926
SmlI CTYRAG 5 cut(s) 152, 1164, 1289, 1343, 1404
SmoI CTYRAG 5 cut(s) 152, 1164, 1289, 1343, 1404
Sse9I AATT 7 cut(s) 26, 552, 754, 957, 1064, 1141, 1413
SspMI CTAG 4 cut(s) 803, 990, 1047, 1251
SstI GAGCTC 2 cut(s) 888, 1344
StyD4I CCNGG 2 cut(s) 1207, 1390
StyI CCWWGG 2 cut(s) 21, 125
TaaI ACNGT 6 cut(s) 1029, 1041, 1072, 1108, 1177, 1192
TaiI ACGT 1 cut(s) 900
TaqI TCGA 5 cut(s) 429, 764, 980, 1031, 1338
TasI AATT 7 cut(s) 26, 552, 754, 957, 1064, 1141, 1413
TatI WGTACW 2 cut(s) 499, 1253
TfiI GAWTC 6 cut(s) 385, 521, 718, 775, 977, 1285
Tru1I TTAA 6 cut(s) 198, 222, 284, 611, 668, 1067
Tru9I TTAA 6 cut(s) 198, 222, 284, 611, 668, 1067
TscAI CASTG 4 cut(s) 344, 571, 1000, 1129
TseFI GTSAC 1 cut(s) 970
TseI GCWGC 3 cut(s) 311, 1079, 1400
Tsp45I GTSAC 1 cut(s) 970
TspDTI ATGAA 5 cut(s) 430, 431, 635, 941, 1137
TspGWI ACGGA 1 cut(s) 785
TspRI CASTG 4 cut(s) 344, 571, 1000, 1129
Van91I CCANNNNNTGG 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 18, 926
XapI RAATTY 2 cut(s) 552, 754
XceI RCATGY 3 cut(s) 506, 588, 1249
XcmI CCANNNNNNNNNTGG 1 cut(s) 378
XmnI GAANNNNTTC 2 cut(s) 552, 1381
XspI CTAG 4 cut(s) 803, 990, 1047, 1251
ZrmI AGTACT 1 cut(s) 1255
Zsp2I ATGCAT 1 cut(s) 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.