Rh1DG461300

exonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008863
Physical Location & Seq
Forward (+)
66491533 .. 66492341
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG461300.1

Sequence Viewer

Length: 732 bp
ATGGATGTAAAGTTCTTTGTGGCTCCTTATGAAGCCGATGCCCAATTGACACACTTGGCGAGCAAGAAAATAATAGACGCCGTCGTCACCAATGATTCAGACCTTATAGCATTCGGATGTAAAAAAATTATCTATCACATTGATTTTGAAGAAGAGACATGTGATTATTACTCATTTGATCGTTTAAAAGAAGTGAACGATGCCTACAAAGATTTTTCGCAAAAGAAGCTTCTAGAAATGGCAATAATGATAGGATGCGATTATTTACCAAATTTGGCAGGCATAGGCATTGGTAAAGCTTACGATGAGATAATGAAGCATAAACATTATGAGAATGTAATTGCCTGGTCGAAAAAAAAGCTGGTGCTTAGAACTGGGGTCGGGAATAAACAAGATACAACTTTGAGGACGGAGATTCTACAATGTTTTCAAATGGCAATTCTGGCGTTCACATATCAACAAGTTTATAATCCCGAATCTAAAACTTGTGAACGCTTATCTAATATGATATATAATAATCTACAGGATGTCGTGGTGAGAAACATAACCAGGTTGTTAGGACCACGTTTGAAGGACGAATCTGTTCATAATATTGCAATGGGTAATAGACCTACGAAGCTCGAGGACATTGATGTAGATAATCGGCCTGAACAGTATCATGGAAAGACGGTTGAGTATGGGCTAAATTCTTTGGAAAGATTTTTTTGTAATAAGAGAAGCCGAAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03430 map03430
Pfam Domains
Protein Families
XPG_I XPG_N

Protein Analysis

243

Amino Acids

28.17

Weight (kDa)

6.61

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XPG_I PF00867 3 - 87 1.2e-19 XPG I-region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AasI GACNNNNNNGTC 1 cut(s) 83
AcsI RAATTY 2 cut(s) 271, 685
AcyI GRCGYC 1 cut(s) 78
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 3 cut(s) 149, 431, 571
AjnI CCWGG 2 cut(s) 344, 548
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 4 cut(s) 229, 299, 361, 619
AluI AGCT 4 cut(s) 229, 299, 361, 619
Alw26I GTCTC 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 620
AoxI GGCC 1 cut(s) 644
ApoI RAATTY 2 cut(s) 271, 685
Asp700I GAANNNNTTC 1 cut(s) 582
AspS9I GGNCC 1 cut(s) 560
AsuHPI GGTGA 2 cut(s) 79, 547
AvaI CYCGRG 1 cut(s) 620
AvaII GGWCC 1 cut(s) 560
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 2 cut(s) 346, 550
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 521
Bme1390I CCNGG 2 cut(s) 346, 550
Bme18I GGWCC 1 cut(s) 560
BmeT110I CYCGRG 1 cut(s) 620
BmgT120I GGNCC 1 cut(s) 560
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 2 cut(s) 346, 550
BmrI ACTGGG 1 cut(s) 384
BmsI GCATC 3 cut(s) 28, 190, 245
BmuI ACTGGG 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 603
BseBI CCWGG 2 cut(s) 346, 550
BseGI GGATG 4 cut(s) 10, 122, 260, 532
BseMI GCAATG 1 cut(s) 603
BseNI ACTGG 1 cut(s) 379
BshFI GGCC 1 cut(s) 646
BsiHKCI CYCGRG 1 cut(s) 620
BsmAI GTCTC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 1 cut(s) 646
BsoBI CYCGRG 1 cut(s) 620
Bsp143I GATC 1 cut(s) 178
BspANI GGCC 1 cut(s) 646
BspLI GGNNCC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 1 cut(s) 379
BssMI GATC 1 cut(s) 178
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 346, 550
Bst4CI ACNGT 2 cut(s) 654, 670
Bst6I CTCTTC 1 cut(s) 147
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 61, 280
BstDEI CTNAG 1 cut(s) 368
BstF5I GGATG 4 cut(s) 10, 122, 260, 532
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 2 cut(s) 226, 443
BstNI CCWGG 2 cut(s) 346, 550
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 344, 548
BstSFI CTRYAG 1 cut(s) 521
BsuRI GGCC 1 cut(s) 646
BtsCI GGATG 4 cut(s) 10, 122, 260, 532
Cac8I GCNNGC 2 cut(s) 61, 280
Cfr13I GGNCC 1 cut(s) 560
CseI GACGC 1 cut(s) 86
CsiI ACCWGGT 1 cut(s) 548
CviAII CATG 2 cut(s) 159, 659
CviJI RGCY 9 cut(s) 23, 35, 229, 299, 361, 619, 646, 682, 720
CviKI_1 RGCY 9 cut(s) 23, 35, 229, 299, 361, 619, 646, 682, 720
DdeI CTNAG 1 cut(s) 368
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
DraI TTTAAA 1 cut(s) 186
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 560
Eco88I CYCGRG 1 cut(s) 620
EcoRII CCWGG 2 cut(s) 344, 548
FaeI CATG 2 cut(s) 162, 662
FatI CATG 2 cut(s) 158, 658
FokI GGATG 4 cut(s) 17, 129, 267, 539
FspBI CTAG 1 cut(s) 233
HaeIII GGCC 1 cut(s) 646
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 162, 662
HindIII AAGCTT 2 cut(s) 227, 297
HinfI GANTC 4 cut(s) 95, 415, 476, 578
HphI GGTGA 2 cut(s) 79, 547
Hpy166II GTNNAC 3 cut(s) 196, 450, 491
Hpy188I TCNGA 2 cut(s) 100, 116
Hpy188III TCNNGA 3 cut(s) 233, 382, 473
Hpy8I GTNNAC 3 cut(s) 196, 450, 491
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 565
HpyCH4III ACNGT 2 cut(s) 654, 670
HpyCH4IV ACGT 1 cut(s) 565
HpyCH4V TGCA 1 cut(s) 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 443
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 1 cut(s) 565
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 162, 662
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 28
LweI GCATC 3 cut(s) 28, 190, 245
MabI ACCWGGT 1 cut(s) 548
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 565
MaeIII GTNAC 1 cut(s) 85
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 2 cut(s) 161, 164
MfeI CAATTG 1 cut(s) 44
MluCI AATT 6 cut(s) 44, 126, 271, 339, 438, 685
MnlI CCTC 2 cut(s) 399, 616
MroXI GAANNNNTTC 1 cut(s) 582
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 115
MspR9I CCNGG 2 cut(s) 346, 550
MunI CAATTG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 2 cut(s) 346, 550
MwoI GCNNNNNNNGC 2 cut(s) 226, 443
NdeII GATC 1 cut(s) 178
NlaIII CATG 2 cut(s) 162, 662
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 1 cut(s) 162
PaeR7I CTCGAG 1 cut(s) 620
PciI ACATGT 1 cut(s) 158
PctI GAATGC 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 4 cut(s) 95, 415, 476, 578
PflFI GACNNNGTC 1 cut(s) 80
PscI ACATGT 1 cut(s) 158
PsiI TTATAA 1 cut(s) 468
Psp6I CCWGG 2 cut(s) 344, 548
PspGI CCWGG 2 cut(s) 344, 548
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 560
PspXI VCTCGAGB 1 cut(s) 620
PsrI GAACNNNNNNTAC 2 cut(s) 188, 220
PsyI GACNNNGTC 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 115
SaqAI TTAA 1 cut(s) 185
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 1 cut(s) 560
ScrFI CCNGG 2 cut(s) 346, 550
SetI ASST 8 cut(s) 105, 231, 301, 363, 554, 568, 613, 621
SexAI ACCWGGT 1 cut(s) 548
SfaNI GCATC 3 cut(s) 28, 190, 245
SfcI CTRYAG 1 cut(s) 521
Sfr274I CTCGAG 1 cut(s) 620
SinI GGWCC 1 cut(s) 560
SlaI CTCGAG 1 cut(s) 620
SmiMI CAYNNNNRTG 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 6 cut(s) 44, 126, 271, 339, 438, 685
SspI AATATT 1 cut(s) 592
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 2 cut(s) 344, 548
TaaI ACNGT 2 cut(s) 654, 670
TaiI ACGT 1 cut(s) 568
TaqI TCGA 2 cut(s) 350, 621
TasI AATT 6 cut(s) 44, 126, 271, 339, 438, 685
TfiI GAWTC 4 cut(s) 95, 415, 476, 578
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 45, 329, 575
TspGWI ACGGA 1 cut(s) 425
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 560
XapI RAATTY 2 cut(s) 271, 685
XbaI TCTAGA 1 cut(s) 232
XceI RCATGY 1 cut(s) 162
XhoI CTCGAG 1 cut(s) 620
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.