Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001824

Physical Location & Seq

Genomic Coordinates Reverse (-)

1233128 .. 1237234

Gene Structure 4107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTCGTTCATTGGAACCCAGCAGAAATGCAAGGCTTGTGAAAAGACTGTTCATTTCATTGAACAAGTATCTGCTGATGGTGTTCCTTATCACAGAACCTGCTTTAAGTGCAGTCACTGCAACGGACAATTGTCGATAAGCAGCTACTCCACCAGGGAGGGAGCTCTATACTGCAAGCCTCATTTCGAGCAACTCTTCAAGGAGAGTAACTTCAAGAAACCTCCATCAGGTGGAATGCTGACCAAGGCCCCTAGCAAATTGTCCTCCATTTTCTCTGGGACTCAAGACAAATGTGCTGTCTGCACCAAAACTGTTTATCCATTAGAGAAGGTTACTATGGAAGGAGCGTTTTACCACAAGAACTGCTTTAGGTGTAACCATGGGGGTTGCTTCCTCTCACCCTCAAACTGTGCTGCTCTAGATGGCATTCTATACTGCAAGCACCACTTTGCCCAGTTGTTCAAGGAGAAGGGCAGCTACAATCACCTCACCAAGACTGCTTCTATGAAGAAAAATGCAGCTCCATTACCCGAGCCAAGTCCCACGGAAGAGGCAGAAGAACCAAAGCCAGACGCAGCAGCGGAAGCAGAACCCGAGGCACAGGAGTCACAAGATGCAACACAATCACAAGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

213

Amino Acids

23.39

Weight (kDa)

7.52

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 66	6.1e-12	LIM domain
LIM	PF00412	98 - 154	8.4e-10	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39900 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770
fragaria_vesca	FvH4_5g01960 FvH4_5g01960 FvH4_7g23860 FvH4_7g23860
malus_domestica	MD01G1145700.v1.1 MD06G1078000.v1.1 MD07G1212800.v1.1 MD14G1098800.v1.1
prunus_persica	Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.5G095800_v2.0.a1 Prupe.5G095800_v2.0.a1
pyrus_communis	pycom01g16520 pycom07g19560 pycom14g09680
rosa_chinensis	RchiOBHm_Chr1g0369211 RchiOBHm_Chr7g0198411
rosa_laevigata	RLG00000003869 RLG00000027145
rosa_multiflora	Rmu_sc0001250.1_g000011 Rmu_sc0005807.1_g000002 Rmu_sc0030914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257710 Rroxscaffold_4G00287850
rosa_rugosa	Rorug01G0349100 Rorug07G0047800
rosa_samantha	Rh1AG356000 Rh1BG319600 Rh1CG333600 Rh1DG350300 Rh7AG171600 Rh7BG174400 Rh7CG180000 Rh7DG173500
rosa_wichuraiana	Rw1G031420 Rw7G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	107
AccB7I	CCANNNNNTGG	1 cut(s)	230
AciI	CCGC	1 cut(s)	581
AfiI	CCNNNNNNNGG	2 cut(s)	227, 230
AgsI	TTSAA	4 cut(s)	62, 199, 214, 463
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	4 cut(s)	144, 164, 477, 521
AluI	AGCT	4 cut(s)	144, 164, 477, 521
Alw21I	GWGCWC	1 cut(s)	166
AlwNI	CAGNNNCTG	2 cut(s)	99, 117
Ama87I	CYCGRG	2 cut(s)	530, 593
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	6 cut(s)	141, 413, 474, 518, 575, 578
ArsI	GACNNNNNNTTYG	2 cut(s)	282, 314
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	3 cut(s)	390, 476, 481
AvaI	CYCGRG	2 cut(s)	530, 593
BanII	GRGCYC	1 cut(s)	166
BarI	GAAGNNNNNNTAC	2 cut(s)	461, 493
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	6 cut(s)	153, 400, 486, 530, 587, 590
BccI	CCATC	3 cut(s)	71, 232, 416
BciT130I	CCWGG	1 cut(s)	154
BfaI	CTAG	2 cut(s)	252, 419
BfuAI	ACCTGC	1 cut(s)	107
BisI	GCNGC	6 cut(s)	142, 414, 475, 519, 576, 579
BlsI	GCNGC	6 cut(s)	143, 415, 476, 520, 577, 580
Bme1390I	CCNGG	1 cut(s)	154
BmeT110I	CYCGRG	2 cut(s)	530, 593
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	2 cut(s)	16, 249
BmrFI	CCNGG	1 cut(s)	154
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	1 cut(s)	604
BmuI	ACTGGG	1 cut(s)	448
BoxI	GACNNNNGTC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	267
BsaJI	CCNNGG	5 cut(s)	153, 243, 379, 543, 594
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 230
Bse1I	ACTGG	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	5 cut(s)	153, 243, 379, 543, 594
BseLI	CCNNNNNNNGG	2 cut(s)	227, 230
BseNI	ACTGG	1 cut(s)	454
BseXI	GCAGC	6 cut(s)	153, 400, 486, 530, 587, 590
BseYI	CCCAGC	1 cut(s)	18
BsgI	GTGCAG	2 cut(s)	130, 286
BshFI	GGCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	166
BsiHKCI	CYCGRG	2 cut(s)	530, 593
BslFI	GGGAC	2 cut(s)	292, 525
BslI	CCNNNNNNNGG	2 cut(s)	227, 230
BsmFI	GGGAC	2 cut(s)	292, 525
BsmI	GAATGC	2 cut(s)	240, 426
BsnI	GGCC	1 cut(s)	248
BsoBI	CYCGRG	2 cut(s)	530, 593
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	1 cut(s)	581
BspANI	GGCC	1 cut(s)	248
BspLI	GGNNCC	2 cut(s)	16, 249
BspMI	ACCTGC	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	5 cut(s)	153, 243, 379, 543, 594
BssT1I	CCWWGG	2 cut(s)	243, 379
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	3 cut(s)	49, 313, 410
Bst6I	CTCTTC	2 cut(s)	200, 543
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	176, 440
BstDSI	CCRYGG	2 cut(s)	379, 543
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 117, 584
BstNI	CCWGG	1 cut(s)	154
BstPAI	GACNNNNGTC	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	152
BstV1I	GCAGC	6 cut(s)	153, 400, 486, 530, 587, 590
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	2 cut(s)	379, 543
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	115
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	2 cut(s)	176, 440
CaiI	CAGNNNCTG	2 cut(s)	99, 117
Cfr13I	GGNCC	1 cut(s)	247
CseI	GACGC	1 cut(s)	581
CviAII	CATG	1 cut(s)	380
CviJI	RGCY	9 cut(s)	35, 144, 164, 178, 248, 477, 521, 535, 568
CviKI_1	RGCY	9 cut(s)	35, 144, 164, 178, 248, 477, 521, 535, 568
Eam1104I	CTCTTC	2 cut(s)	200, 543
EarI	CTCTTC	2 cut(s)	200, 543
Ecl136II	GAGCTC	1 cut(s)	164
Eco130I	CCWWGG	2 cut(s)	243, 379
Eco24I	GRGCYC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	164
Eco88I	CYCGRG	2 cut(s)	530, 593
EcoICRI	GAGCTC	1 cut(s)	164
EcoNI	CCTNNNNNAGG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	152
EcoT14I	CCWWGG	2 cut(s)	243, 379
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	2 cut(s)	243, 379
FaeI	CATG	1 cut(s)	383
FaiI	YATR	5 cut(s)	169, 338, 381, 433, 506
FalI	AAGNNNNNCTT	4 cut(s)	350, 382, 431, 463
FaqI	GGGAC	2 cut(s)	292, 525
FatI	CATG	1 cut(s)	379
Fnu4HI	GCNGC	6 cut(s)	142, 414, 475, 519, 576, 579
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	6 cut(s)	142, 414, 475, 519, 576, 579
FspBI	CTAG	2 cut(s)	252, 419
GluI	GCNGC	6 cut(s)	142, 414, 475, 519, 576, 579
GsaI	CCCAGC	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	248
HgaI	GACGC	1 cut(s)	581
Hin1II	CATG	1 cut(s)	383
HinfI	GANTC	2 cut(s)	280, 605
HphI	GGTGA	3 cut(s)	390, 476, 481
Hpy188III	TCNNGA	3 cut(s)	214, 284, 419
HpyAV	CCTTC	3 cut(s)	322, 335, 463
HpyCH4III	ACNGT	3 cut(s)	49, 313, 410
HpyCH4V	TGCA	8 cut(s)	30, 111, 120, 174, 303, 438, 518, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 117, 584
Hsp92II	CATG	1 cut(s)	383
LmnI	GCTCC	3 cut(s)	161, 344, 526
LpnPI	CCDG	9 cut(s)	32, 112, 139, 166, 213, 261, 467, 582, 587
Lsp1109I	GCAGC	6 cut(s)	153, 400, 486, 530, 587, 590
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	2 cut(s)	252, 419
MaeIII	GTNAC	5 cut(s)	113, 206, 331, 374, 606
MboII	GAAGA	4 cut(s)	187, 520, 560, 569
MfeI	CAATTG	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	2 cut(s)	128, 257
MlyI	GAGTC	2 cut(s)	274, 614
MnlI	CCTC	9 cut(s)	151, 189, 231, 274, 404, 412, 497, 544, 589
MseI	TTAA	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	581
MspR9I	CCNGG	1 cut(s)	154
MunI	CAATTG	1 cut(s)	128
Mva1269I	GAATGC	2 cut(s)	240, 426
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	3 cut(s)	108, 117, 584
NcoI	CCATGG	1 cut(s)	379
NlaIII	CATG	1 cut(s)	383
NlaIV	GGNNCC	2 cut(s)	16, 249
NmuCI	GTSAC	2 cut(s)	113, 606
PctI	GAATGC	2 cut(s)	240, 426
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	6 cut(s)	143, 415, 476, 520, 577, 580
PleI	GAGTC	2 cut(s)	274, 613
PpsI	GAGTC	2 cut(s)	274, 613
PshAI	GACNNNNGTC	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	16, 249
PspPI	GGNCC	1 cut(s)	247
PstNI	CAGNNNCTG	2 cut(s)	99, 117
SacI	GAGCTC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	6 cut(s)	142, 414, 475, 519, 576, 579
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	2 cut(s)	274, 614
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	166
SfaNI	GCATC	1 cut(s)	604
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	2 cut(s)	128, 257
SsiI	CCGC	1 cut(s)	581
SspMI	CTAG	2 cut(s)	252, 419
SstI	GAGCTC	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	2 cut(s)	243, 379
TaaI	ACNGT	3 cut(s)	49, 313, 410
TaqI	TCGA	2 cut(s)	134, 186
TasI	AATT	2 cut(s)	128, 257
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	122
TseFI	GTSAC	2 cut(s)	113, 606
TseI	GCWGC	6 cut(s)	141, 413, 474, 518, 575, 578
Tsp45I	GTSAC	2 cut(s)	113, 606
TspDTI	ATGAA	3 cut(s)	41, 46, 521
TspGWI	ACGGA	2 cut(s)	138, 560
TspRI	CASTG	1 cut(s)	122
Van91I	CCANNNNNTGG	1 cut(s)	230
XagI	CCTNNNNNAGG	1 cut(s)	225
XbaI	TCTAGA	1 cut(s)	418
XspI	CTAG	2 cut(s)	252, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.