Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001824

Physical Location & Seq

Genomic Coordinates Reverse (-)

29072245 .. 29074953

Gene Structure 2709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1212800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTCTTTCATTGGCACCCAGCAGAAATGCAAGGCTTGTGAAAAGACAGTTTACCCAGTGGAGGAGCTTTCTGCTGATGGGATTTCCTACCACAAGTCTTGCTTCAAATGCACCCACTGCAAAGGGACTTTGAAGCTGAGCAATTATTCCTCAATGGAAGGTGTCCTGTACTGTAAGCCTCACTTTGAGCAACTGTTCAAGGAGACTGGCAATTTCAACAAGAACTTTCAGTCGCCAGCTGCAAAGTCAGCTGAGAAGTTAACTCCAGAGCTGACTAGGTCACCTAGCAAAGCTGCTAGCATGTTTTCTGGAACACAAGACAAATGTGCTACTTGTGGTAAAACAGCTTACCCACTGGAGAAGGTGACAGTGGAGAGCCAGGCTTACCACAAGTCGTGTTTCAAGTGTTCTCACGGCGGCTGTCCTATTACTCCCTCAAACTACGCTGCCCTGGAGGGCATTTTATACTGCAAGCACCATTTCTCCCAGCTTTTCAAGGAGAAGGGGAGCTACAACCATCTTATTAAGTCTGCATCAATCAAGCGCACAGCAGCTGCAGCAGCAGCGGCAGCAGCAACAGTAGCCTCCATTCCAGAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

201

Amino Acids

21.72

Weight (kDa)

9.01

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 66	3.3e-12	LIM domain
LIM	PF00412	109 - 165	1.7e-10	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39900 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770
fragaria_vesca	FvH4_5g01960 FvH4_5g01960 FvH4_7g23860 FvH4_7g23860
malus_domestica	MD01G1145700.v1.1 MD06G1078000.v1.1 MD07G1212800.v1.1 MD14G1098800.v1.1
prunus_persica	Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.5G095800_v2.0.a1 Prupe.5G095800_v2.0.a1
pyrus_communis	pycom01g16520 pycom07g19560 pycom14g09680
rosa_chinensis	RchiOBHm_Chr1g0369211 RchiOBHm_Chr7g0198411
rosa_laevigata	RLG00000003869 RLG00000027145
rosa_multiflora	Rmu_sc0001250.1_g000011 Rmu_sc0005807.1_g000002 Rmu_sc0030914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257710 Rroxscaffold_4G00287850
rosa_rugosa	Rorug01G0349100 Rorug07G0047800
rosa_samantha	Rh1AG356000 Rh1BG319600 Rh1CG333600 Rh1DG350300 Rh7AG171600 Rh7BG174400 Rh7CG180000 Rh7DG173500
rosa_wichuraiana	Rw1G031420 Rw7G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AciI	CCGC	2 cut(s)	417, 566
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	6 cut(s)	106, 133, 199, 217, 403, 496
AjnI	CCWGG	2 cut(s)	378, 450
Alw26I	GTCTC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	546
AsuHPI	GGTGA	2 cut(s)	273, 376
AsuNHI	GCTAGC	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	14
BarI	GAAGNNNNNNTAC	2 cut(s)	494, 526
BccI	CCATC	2 cut(s)	71, 525
BceAI	ACGGC	1 cut(s)	430
BciT130I	CCWGG	2 cut(s)	380, 452
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	3 cut(s)	276, 285, 297
BfmI	CTRYAG	1 cut(s)	555
BlpI	GCTNAGC	1 cut(s)	137
Bme1390I	CCNGG	2 cut(s)	380, 452
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	2 cut(s)	380, 452
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	542
BmtI	GCTAGC	1 cut(s)	300
BmuI	ACTGGG	1 cut(s)	50
BpmI	CTGGAG	3 cut(s)	249, 377, 473
Bpu1102I	GCTNAGC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	450
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	3 cut(s)	56, 211, 360
BseBI	CCWGG	2 cut(s)	380, 452
BseDI	CCNNGG	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	128, 243
BseNI	ACTGG	3 cut(s)	56, 211, 360
BseRI	GAGGAG	1 cut(s)	77
BseYI	CCCAGC	2 cut(s)	18, 486
BshNI	GGYRCC	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	139
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	2 cut(s)	417, 566
BspCNI	CTCAG	2 cut(s)	129, 244
BspLI	GGNNCC	1 cut(s)	16
BspMAI	CTGCAG	1 cut(s)	559
BspOI	GCTAGC	1 cut(s)	300
BspT107I	GGYRCC	1 cut(s)	14
BsrI	ACTGG	3 cut(s)	56, 211, 360
BssECI	CCNNGG	1 cut(s)	450
Bst2UI	CCWGG	2 cut(s)	380, 452
Bst4CI	ACNGT	5 cut(s)	49, 173, 195, 370, 580
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	237, 298, 473
BstDEI	CTNAG	2 cut(s)	137, 252
BstEII	GGTNACC	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	546
BstMAI	GTCTC	1 cut(s)	197
BstNI	CCWGG	2 cut(s)	380, 452
BstNSI	RCATGY	1 cut(s)	304
BstPI	GGTNACC	1 cut(s)	279
BstSCI	CCNGG	2 cut(s)	378, 450
BstSFI	CTRYAG	1 cut(s)	555
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	4 cut(s)	63, 115, 353, 375
Cac8I	GCNNGC	3 cut(s)	237, 298, 473
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	1 cut(s)	546
Csp6I	GTAC	1 cut(s)	169
CspCI	CAANNNNNGTGG	2 cut(s)	80, 115
CviAII	CATG	1 cut(s)	301
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	2 cut(s)	137, 252
Eco91I	GGTNACC	1 cut(s)	279
EcoO65I	GGTNACC	1 cut(s)	279
EcoRII	CCWGG	2 cut(s)	378, 450
FaeI	CATG	1 cut(s)	304
FaiI	YATR	3 cut(s)	302, 466, 601
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 167, 199
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	300
FspBI	CTAG	3 cut(s)	276, 285, 297
GlaI	GCGC	1 cut(s)	545
GsaI	CCCAGC	2 cut(s)	22, 490
GsuI	CTGGAG	3 cut(s)	249, 377, 473
HhaI	GCGC	1 cut(s)	546
Hin1II	CATG	1 cut(s)	304
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HpaI	GTTAAC	1 cut(s)	261
HphI	GGTGA	2 cut(s)	273, 376
Hpy166II	GTNNAC	2 cut(s)	52, 261
Hpy188III	TCNNGA	3 cut(s)	266, 309, 593
Hpy8I	GTNNAC	2 cut(s)	52, 261
HpyAV	CCTTC	3 cut(s)	152, 355, 496
HpyCH4III	ACNGT	5 cut(s)	49, 173, 195, 370, 580
HpyCH4V	TGCA	7 cut(s)	30, 111, 120, 242, 471, 533, 557
HpyF3I	CTNAG	2 cut(s)	137, 252
Hsp92II	CATG	1 cut(s)	304
HspAI	GCGC	1 cut(s)	544
KspAI	GTTAAC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	64, 507
LweI	GCATC	1 cut(s)	542
MaeI	CTAG	3 cut(s)	276, 285, 297
MaeIII	GTNAC	2 cut(s)	279, 364
MluCI	AATT	2 cut(s)	142, 211
MnlI	CCTC	6 cut(s)	55, 160, 189, 445, 448, 595
MseI	TTAA	2 cut(s)	260, 525
MspA1I	CMGCKG	4 cut(s)	239, 251, 554, 566
MspR9I	CCNGG	2 cut(s)	380, 452
MvaI	CCWGG	2 cut(s)	380, 452
NheI	GCTAGC	1 cut(s)	296
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	279, 364
NspI	RCATGY	1 cut(s)	304
PflFI	GACNNNGTC	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	378, 450
PspEI	GGTNACC	1 cut(s)	279
PspFI	CCCAGC	2 cut(s)	18, 486
PspGI	CCWGG	2 cut(s)	378, 450
PspN4I	GGNNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	559
PstNI	CAGNNNCTG	1 cut(s)	554
PsyI	GACNNNGTC	1 cut(s)	277
PvuII	CAGCTG	3 cut(s)	239, 251, 554
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	260, 525
ScrFI	CCNGG	2 cut(s)	380, 452
SfaNI	GCATC	1 cut(s)	542
SfcI	CTRYAG	1 cut(s)	555
Sse9I	AATT	2 cut(s)	142, 211
SsiI	CCGC	2 cut(s)	417, 566
SspMI	CTAG	3 cut(s)	276, 285, 297
StyD4I	CCNGG	2 cut(s)	378, 450
TaaI	ACNGT	5 cut(s)	49, 173, 195, 370, 580
TasI	AATT	2 cut(s)	142, 211
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	2 cut(s)	420, 569
Tru1I	TTAA	2 cut(s)	260, 525
Tru9I	TTAA	2 cut(s)	260, 525
TscAI	CASTG	4 cut(s)	63, 122, 360, 375
TseFI	GTSAC	2 cut(s)	279, 364
Tsp45I	GTSAC	2 cut(s)	279, 364
TspRI	CASTG	4 cut(s)	63, 122, 360, 375
Tth111I	GACNNNGTC	1 cut(s)	277
XceI	RCATGY	1 cut(s)	304
XspI	CTAG	3 cut(s)	276, 285, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.