Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001824

Physical Location & Seq

Genomic Coordinates Forward (+)

8792944 .. 8795837

Gene Structure 2894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTCTTTCATTGGCACCCAGCAGAAATGCAAGGCTTGTGCAAAGACGGTTTATCCAGTAGAGGAGCTATCTGCAGATGGGATTTCCTACCACAAGTCTTGCTTCAAGTGCACTCACTGCAAAGGGACTTTGAAGCTGAGCAATTATTCCTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAACTCTTCAAGGAGACCGGAAACTTCAACAAGAATTTCCAGTCACCTGCAAAGTCAGCTGAGAAGCTAACTCCAGAACTGACTAGGTCACCCAGCAAAGCTGCTGGTATGTTTTCTGGCACACAAGAAAAATGTGCTACTTGTGGTAAAACCGCTTATCCACTGGAGAAGGTGACGGTGGAGAGCCAGGCCTATCACAAGTCGTGTTTTAAGTGTTCTCACGGTGGCTGTCCTATTACTCCATCAAATTATGCAGCCCTTGAGGGAATTTTATACTGTAAGCACCATTTCTCCCAGCTTTTCAAGGAAAAGGGGAGCTACAACCATCTTATTAAGTCTGCATCAATCAAGCGTGCAGCAGCAGCAACAGCAACAGCAGCTGCAGCAGCAGTAGCCTCCATTCCAGAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

200

Amino Acids

21.65

Weight (kDa)

9.08

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 66	3e-12	LIM domain
LIM	PF00412	108 - 164	1.7e-10	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39900 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770
fragaria_vesca	FvH4_5g01960 FvH4_5g01960 FvH4_7g23860 FvH4_7g23860
malus_domestica	MD01G1145700.v1.1 MD06G1078000.v1.1 MD07G1212800.v1.1 MD14G1098800.v1.1
prunus_persica	Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.5G095800_v2.0.a1 Prupe.5G095800_v2.0.a1
pyrus_communis	pycom01g16520 pycom07g19560 pycom14g09680
rosa_chinensis	RchiOBHm_Chr1g0369211 RchiOBHm_Chr7g0198411
rosa_laevigata	RLG00000003869 RLG00000027145
rosa_multiflora	Rmu_sc0001250.1_g000011 Rmu_sc0005807.1_g000002 Rmu_sc0030914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257710 Rroxscaffold_4G00287850
rosa_rugosa	Rorug01G0349100 Rorug07G0047800
rosa_samantha	Rh1AG356000 Rh1BG319600 Rh1CG333600 Rh1DG350300 Rh7AG171600 Rh7BG174400 Rh7CG180000 Rh7DG173500
rosa_wichuraiana	Rw1G031420 Rw7G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	14
AciI	CCGC	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	223, 456
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	5 cut(s)	106, 133, 199, 217, 493
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	8 cut(s)	67, 136, 248, 256, 290, 487, 507, 569
AluI	AGCT	8 cut(s)	67, 136, 248, 256, 290, 487, 507, 569
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	1 cut(s)	109
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	1 cut(s)	378
ApaLI	GTGCAC	1 cut(s)	109
ApeKI	GCWGC	9 cut(s)	290, 443, 545, 548, 551, 566, 569, 572, 575
ApoI	RAATTY	2 cut(s)	223, 456
Asp700I	GAANNNNTTC	1 cut(s)	162
AsuHPI	GGTGA	3 cut(s)	225, 270, 373
BaeGI	GKGCMC	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	9 cut(s)	277, 455, 556, 557, 560, 563, 578, 584, 587
BccI	CCATC	3 cut(s)	71, 439, 522
BciT130I	CCWGG	1 cut(s)	377
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	2 cut(s)	72, 570
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	9 cut(s)	291, 444, 546, 549, 552, 567, 570, 573, 576
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	9 cut(s)	292, 445, 547, 550, 553, 568, 571, 574, 577
Bme1390I	CCNGG	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	539
BpmI	CTGGAG	2 cut(s)	246, 374
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	470
BsaI	GGTCTC	1 cut(s)	197
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bse1I	ACTGG	3 cut(s)	56, 229, 357
BseBI	CCWGG	1 cut(s)	377
BseMII	CTCAG	2 cut(s)	128, 240
BseNI	ACTGG	3 cut(s)	56, 229, 357
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	9 cut(s)	277, 455, 556, 557, 560, 563, 578, 584, 587
BseYI	CCCAGC	3 cut(s)	18, 281, 483
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	380
Bso31I	GGTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	2 cut(s)	129, 241
BspLI	GGNNCC	1 cut(s)	16
BspMAI	CTGCAG	2 cut(s)	76, 574
BspMI	ACCTGC	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	197
BsrI	ACTGG	3 cut(s)	56, 229, 357
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	5 cut(s)	49, 173, 367, 413, 467
Bst6I	CTCTTC	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	2 cut(s)	137, 249
BstEII	GGTNACC	1 cut(s)	276
BstMAI	GTCTC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	9 cut(s)	108, 117, 245, 551, 557, 566, 572, 575, 581
BstNI	CCWGG	1 cut(s)	377
BstPI	GGTNACC	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	2 cut(s)	72, 570
BstSLI	GKGCMC	1 cut(s)	113
BstV1I	GCAGC	9 cut(s)	277, 455, 556, 557, 560, 563, 578, 584, 587
BsuRI	GGCC	1 cut(s)	380
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	115, 350
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	543
CaiI	CAGNNNCTG	1 cut(s)	569
Csp6I	GTAC	1 cut(s)	169
CspCI	CAANNNNNGTGG	2 cut(s)	80, 115
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	2 cut(s)	137, 249
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco147I	AGGCCT	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	197
Eco91I	GGTNACC	1 cut(s)	276
EcoO65I	GGTNACC	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	375
FaiI	YATR	3 cut(s)	299, 441, 463
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	1 cut(s)	139
Fnu4HI	GCNGC	9 cut(s)	291, 444, 546, 549, 552, 567, 570, 573, 576
Fsp4HI	GCNGC	9 cut(s)	291, 444, 546, 549, 552, 567, 570, 573, 576
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	9 cut(s)	291, 444, 546, 549, 552, 567, 570, 573, 576
GsaI	CCCAGC	3 cut(s)	22, 285, 487
GsuI	CTGGAG	2 cut(s)	246, 374
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	1 cut(s)	207
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	3 cut(s)	225, 270, 373
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	263, 593
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	2 cut(s)	152, 352
HpyCH4III	ACNGT	5 cut(s)	49, 173, 367, 413, 467
HpyF10VI	GCNNNNNNNGC	9 cut(s)	108, 117, 245, 551, 557, 566, 572, 575, 581
HpyF3I	CTNAG	2 cut(s)	137, 249
LmnI	GCTCC	2 cut(s)	64, 504
Lsp1109I	GCAGC	9 cut(s)	277, 455, 556, 557, 560, 563, 578, 584, 587
LweI	GCATC	1 cut(s)	539
MaeI	CTAG	1 cut(s)	273
MaeIII	GTNAC	3 cut(s)	231, 276, 361
MboII	GAAGA	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	4 cut(s)	142, 223, 436, 456
MnlI	CCTC	5 cut(s)	55, 160, 189, 445, 595
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	2 cut(s)	399, 522
MspA1I	CMGCKG	2 cut(s)	248, 569
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	9 cut(s)	108, 117, 245, 551, 557, 566, 572, 575, 581
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	3 cut(s)	231, 276, 361
PaqCI	CACCTGC	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	162
PflFI	GACNNNGTC	1 cut(s)	274
PkrI	GCNGC	9 cut(s)	292, 445, 547, 550, 553, 568, 571, 574, 577
Psp6I	CCWGG	1 cut(s)	375
PspEI	GGTNACC	1 cut(s)	276
PspFI	CCCAGC	3 cut(s)	18, 281, 483
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	16
PstI	CTGCAG	2 cut(s)	76, 574
PstNI	CAGNNNCTG	1 cut(s)	569
PsyI	GACNNNGTC	1 cut(s)	274
PvuII	CAGCTG	2 cut(s)	248, 569
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	399, 522
SatI	GCNGC	9 cut(s)	291, 444, 546, 549, 552, 567, 570, 573, 576
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	113
SfaNI	GCATC	1 cut(s)	539
SfcI	CTRYAG	2 cut(s)	72, 570
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	4 cut(s)	142, 223, 436, 456
SseBI	AGGCCT	1 cut(s)	380
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	273
StuI	AGGCCT	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	375
TaaI	ACNGT	5 cut(s)	49, 173, 367, 413, 467
TasI	AATT	4 cut(s)	142, 223, 436, 456
TatI	WGTACW	1 cut(s)	168
Tru1I	TTAA	2 cut(s)	399, 522
Tru9I	TTAA	2 cut(s)	399, 522
TscAI	CASTG	2 cut(s)	122, 357
TseFI	GTSAC	3 cut(s)	231, 276, 361
TseI	GCWGC	9 cut(s)	290, 443, 545, 548, 551, 566, 569, 572, 575
Tsp45I	GTSAC	3 cut(s)	231, 276, 361
TspRI	CASTG	2 cut(s)	122, 357
Tth111I	GACNNNGTC	1 cut(s)	274
VneI	GTGCAC	1 cut(s)	109
XapI	RAATTY	2 cut(s)	223, 456
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.