Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001824

Physical Location & Seq

Genomic Coordinates Reverse (-)

26253612 .. 26257131

Gene Structure 3520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G245000.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCTTTCATTGGCACCCAGCAAAAATGCAAGGCTTGTGAAAAGACAGTTTACCCAGTAGAGGAACTCTCTGCGGATGGTGTGTCCTACCACAAGGCTTGCTTCAAATGCACCCACTGCAAAGGGACTTTGAAGCTGAGCAATTATTCCTCAATGGAAGGTGTTCTGTACTGTAAGCCCCACTTCGAACAACTCTTCAAGGAGACTGGCAATTTCAACAAGAACTTTCAGTCACCTGCAAAGTCAGCTGAGAAGTTAACTCCAGAGCTGACTAGATCACCTAGCAAAGCTGCTAGCATGTTTTCTGGAACACAAGAAAAATGCGCTACTTGTGGTAAAACCGCTTATCCACTGGAGAAGGTGACAGTGGAGAGCCAGGCCTATCACAAGTCGTGTTTCAAGTGTTCTCATGGCGGCTGTCCTATTACTCCATCAAATTATGCTGCCCTGGAAGGCATTTTATACTGCAAGCACCATTTCTCCCAGCTTTTCAAGGAGAAGGGGAGCTACAACCATCTTATTAAGTCTGCATCGATTAAGCGCGCAGCAGCAGCAGCAGCATCCATTCCAGAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

193

Amino Acids

21.05

Weight (kDa)

9.01

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39900 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770
fragaria_vesca	FvH4_5g01960 FvH4_5g01960 FvH4_7g23860 FvH4_7g23860
malus_domestica	MD01G1145700.v1.1 MD06G1078000.v1.1 MD07G1212800.v1.1 MD14G1098800.v1.1
prunus_persica	Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.5G095800_v2.0.a1 Prupe.5G095800_v2.0.a1
pyrus_communis	pycom01g16520 pycom07g19560 pycom14g09680
rosa_chinensis	RchiOBHm_Chr1g0369211 RchiOBHm_Chr7g0198411
rosa_laevigata	RLG00000003869 RLG00000027145
rosa_multiflora	Rmu_sc0001250.1_g000011 Rmu_sc0005807.1_g000002 Rmu_sc0030914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257710 Rroxscaffold_4G00287850
rosa_rugosa	Rorug01G0349100 Rorug07G0047800
rosa_samantha	Rh1AG356000 Rh1BG319600 Rh1CG333600 Rh1DG350300 Rh7AG171600 Rh7BG174400 Rh7CG180000 Rh7DG173500
rosa_wichuraiana	Rw1G031420 Rw7G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	14
AccII	CGCG	1 cut(s)	543
AciI	CCGC	3 cut(s)	74, 342, 414
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	6 cut(s)	106, 133, 199, 217, 400, 493
AjnI	CCWGG	2 cut(s)	375, 447
AluBI	AGCT	6 cut(s)	136, 248, 268, 290, 487, 507
AluI	AGCT	6 cut(s)	136, 248, 268, 290, 487, 507
Alw26I	GTCTC	1 cut(s)	197
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	7 cut(s)	290, 443, 545, 548, 551, 554, 557
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	3 cut(s)	326, 543, 545
AsuHPI	GGTGA	3 cut(s)	225, 270, 373
AsuII	TTCGAA	1 cut(s)	186
AsuNHI	GCTAGC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	14
BarI	GAAGNNNNNNTAC	2 cut(s)	491, 523
BbvI	GCAGC	7 cut(s)	277, 430, 557, 560, 563, 566, 569
BccI	CCATC	3 cut(s)	71, 439, 522
BciT130I	CCWGG	2 cut(s)	377, 449
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	3 cut(s)	273, 282, 294
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	8 cut(s)	291, 415, 444, 546, 549, 552, 555, 558
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	8 cut(s)	292, 416, 445, 547, 550, 553, 556, 559
Bme1390I	CCNGG	2 cut(s)	377, 449
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	2 cut(s)	377, 449
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	539, 569
BmtI	GCTAGC	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	50
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	2 cut(s)	246, 374
Bpu1102I	GCTNAGC	1 cut(s)	137
Bpu14I	TTCGAA	1 cut(s)	186
Bsa29I	ATCGAT	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	447
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	3 cut(s)	56, 211, 357
BseBI	CCWGG	2 cut(s)	377, 449
BseCI	ATCGAT	1 cut(s)	533
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	2 cut(s)	82, 560
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	128, 240
BseNI	ACTGG	3 cut(s)	56, 211, 357
BsePI	GCGCGC	1 cut(s)	541
BseXI	GCAGC	7 cut(s)	277, 430, 557, 560, 563, 566, 569
BseYI	CCCAGC	2 cut(s)	18, 483
Bsh1236I	CGCG	1 cut(s)	543
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	1 cut(s)	14
BshVI	ATCGAT	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	380
Bsp119I	TTCGAA	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	275
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	3 cut(s)	74, 342, 414
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	2 cut(s)	129, 241
BspDI	ATCGAT	1 cut(s)	533
BspFNI	CGCG	1 cut(s)	543
BspLI	GGNNCC	1 cut(s)	16
BspMI	ACCTGC	1 cut(s)	244
BspOI	GCTAGC	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	14
BsrI	ACTGG	3 cut(s)	56, 211, 357
BssECI	CCNNGG	1 cut(s)	447
BssHII	GCGCGC	1 cut(s)	541
BssMI	GATC	1 cut(s)	275
Bst2UI	CCWGG	2 cut(s)	377, 449
Bst4CI	ACNGT	3 cut(s)	49, 173, 367
Bst6I	CTCTTC	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstBI	TTCGAA	1 cut(s)	186
BstC8I	GCNNGC	4 cut(s)	100, 295, 470, 543
BstDEI	CTNAG	2 cut(s)	137, 249
BstF5I	GGATG	2 cut(s)	82, 560
BstFNI	CGCG	1 cut(s)	543
BstHHI	GCGC	3 cut(s)	326, 543, 545
BstKTI	GATC	1 cut(s)	278
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 117, 245, 551, 554, 557
BstNI	CCWGG	2 cut(s)	377, 449
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	375, 447
BstUI	CGCG	1 cut(s)	543
BstV1I	GCAGC	7 cut(s)	277, 430, 557, 560, 563, 566, 569
Bsu15I	ATCGAT	1 cut(s)	533
BsuRI	GGCC	1 cut(s)	380
BsuTUI	ATCGAT	1 cut(s)	533
BtsCI	GGATG	2 cut(s)	82, 560
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	3 cut(s)	115, 350, 372
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	4 cut(s)	100, 295, 470, 543
CfoI	GCGC	3 cut(s)	326, 543, 545
ClaI	ATCGAT	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	169
CspCI	CAANNNNNGTGG	2 cut(s)	80, 115
CviAII	CATG	2 cut(s)	298, 410
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	2 cut(s)	137, 249
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco147I	AGGCCT	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	375, 447
FaeI	CATG	2 cut(s)	301, 413
FaiI	YATR	5 cut(s)	299, 411, 441, 463, 577
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 167, 199
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	2 cut(s)	297, 409
Fnu4HI	GCNGC	8 cut(s)	291, 415, 444, 546, 549, 552, 555, 558
FokI	GGATG	2 cut(s)	89, 547
Fsp4HI	GCNGC	8 cut(s)	291, 415, 444, 546, 549, 552, 555, 558
FspBI	CTAG	3 cut(s)	273, 282, 294
GlaI	GCGC	3 cut(s)	325, 542, 544
GluI	GCNGC	8 cut(s)	291, 415, 444, 546, 549, 552, 555, 558
GsaI	CCCAGC	2 cut(s)	22, 487
GsuI	CTGGAG	2 cut(s)	246, 374
HaeIII	GGCC	1 cut(s)	380
HhaI	GCGC	3 cut(s)	326, 543, 545
Hin1II	CATG	2 cut(s)	301, 413
Hin6I	GCGC	3 cut(s)	324, 541, 543
HinP1I	GCGC	3 cut(s)	324, 541, 543
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HpaI	GTTAAC	1 cut(s)	258
HphI	GGTGA	3 cut(s)	225, 270, 373
Hpy166II	GTNNAC	2 cut(s)	52, 258
Hpy188III	TCNNGA	3 cut(s)	263, 306, 569
Hpy8I	GTNNAC	2 cut(s)	52, 258
HpyAV	CCTTC	4 cut(s)	152, 352, 446, 493
HpyCH4III	ACNGT	3 cut(s)	49, 173, 367
HpyCH4V	TGCA	6 cut(s)	30, 111, 120, 239, 468, 530
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 117, 245, 551, 554, 557
HpyF3I	CTNAG	2 cut(s)	137, 249
Hsp92II	CATG	2 cut(s)	301, 413
HspAI	GCGC	3 cut(s)	324, 541, 543
KspAI	GTTAAC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	275
LmnI	GCTCC	1 cut(s)	504
Lsp1109I	GCAGC	7 cut(s)	277, 430, 557, 560, 563, 566, 569
LweI	GCATC	2 cut(s)	539, 569
MaeI	CTAG	3 cut(s)	273, 282, 294
MaeIII	GTNAC	2 cut(s)	231, 361
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MboII	GAAGA	1 cut(s)	187
MluCI	AATT	3 cut(s)	142, 211, 436
MnlI	CCTC	2 cut(s)	55, 160
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	3 cut(s)	257, 522, 537
MspA1I	CMGCKG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	377, 449
MvaI	CCWGG	2 cut(s)	377, 449
MvnI	CGCG	1 cut(s)	543
MwoI	GCNNNNNNNGC	6 cut(s)	108, 117, 245, 551, 554, 557
NdeII	GATC	1 cut(s)	275
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	2 cut(s)	301, 413
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	231, 361
NspI	RCATGY	1 cut(s)	301
NspV	TTCGAA	1 cut(s)	186
PaqCI	CACCTGC	1 cut(s)	244
PauI	GCGCGC	1 cut(s)	541
PceI	AGGCCT	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	162
PkrI	GCNGC	8 cut(s)	292, 416, 445, 547, 550, 553, 556, 559
Psp6I	CCWGG	2 cut(s)	375, 447
PspFI	CCCAGC	2 cut(s)	18, 483
PspGI	CCWGG	2 cut(s)	375, 447
PspN4I	GGNNCC	1 cut(s)	16
PteI	GCGCGC	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	257, 522, 537
SatI	GCNGC	8 cut(s)	291, 415, 444, 546, 549, 552, 555, 558
Sau3AI	GATC	1 cut(s)	275
ScrFI	CCNGG	2 cut(s)	377, 449
SfaNI	GCATC	2 cut(s)	539, 569
SfuI	TTCGAA	1 cut(s)	186
Sse9I	AATT	3 cut(s)	142, 211, 436
SseBI	AGGCCT	1 cut(s)	380
SsiI	CCGC	3 cut(s)	74, 342, 414
SspMI	CTAG	3 cut(s)	273, 282, 294
StuI	AGGCCT	1 cut(s)	380
StyD4I	CCNGG	2 cut(s)	375, 447
TaaI	ACNGT	3 cut(s)	49, 173, 367
TaqI	TCGA	2 cut(s)	186, 533
TasI	AATT	3 cut(s)	142, 211, 436
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	417
Tru1I	TTAA	3 cut(s)	257, 522, 537
Tru9I	TTAA	3 cut(s)	257, 522, 537
TscAI	CASTG	3 cut(s)	122, 357, 372
TseFI	GTSAC	2 cut(s)	231, 361
TseI	GCWGC	7 cut(s)	290, 443, 545, 548, 551, 554, 557
Tsp45I	GTSAC	2 cut(s)	231, 361
TspRI	CASTG	3 cut(s)	122, 357, 372
XceI	RCATGY	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	3 cut(s)	273, 282, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.