Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001824

Physical Location & Seq

Genomic Coordinates Reverse (-)

10515183 .. 10517237

Gene Structure 2055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G095800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCGTTCAGTGGAACCCAACAGAAATGCAAGGCCTGTGATAAGACTGTTCATTTCATTGACCAATTATCTGCTGATGGTGTCACATACCATAGGCCCTGCTTTAAATGCAGTCATTGCAATGGACAACTTTCGATGAGTAGCTACTCCTCCATGGAGGGAGTTTTGTACTGCAAGCCTCATTTCGAGCAATTGTTCAGGGAGTCTGGAAGTTTCTCCAAGAAACTTACATGTGGAAAGTCACAAACTGAATTGGGTAGGACCCCTAGCAAACTGTCCTCAATGTTCTCTGGGACTGTAGACAAATGTGCAGTCTGCACCAAAACTGTGTATCCACTAGAGAAGGTTACTATGGAGGGAGAGTTTTACCACAAGTCATGCTTCAGGTGTAATCATGGGGGTTGCTTCCTCTCACCCTCAAACTGTGCTGCTCTGGATGGCATTCTTTATTGCAAGCACCACTTTGCCCAACTGTTCAAGGAGAAGGGCAGCTACAACCACCTCACCAAGACTGCTTCAGTCAAGAAAAATGGAGCTCCAATGCCCGAAATGAAACCCGGGGAAGCCGATTCAGAGAAGGCACAAGAAGTAGCAGAAGACCCAAAACAAGAAGCAGAGGGAGAAGCAGAAGCAGCACAGGATTCAGCCCCACAGGGGCAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

222

Amino Acids

24.25

Weight (kDa)

7.5

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39900 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770
fragaria_vesca	FvH4_5g01960 FvH4_5g01960 FvH4_7g23860 FvH4_7g23860
malus_domestica	MD01G1145700.v1.1 MD06G1078000.v1.1 MD07G1212800.v1.1 MD14G1098800.v1.1
prunus_persica	Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.5G095800_v2.0.a1 Prupe.5G095800_v2.0.a1
pyrus_communis	pycom01g16520 pycom07g19560 pycom14g09680
rosa_chinensis	RchiOBHm_Chr1g0369211 RchiOBHm_Chr7g0198411
rosa_laevigata	RLG00000003869 RLG00000027145
rosa_multiflora	Rmu_sc0001250.1_g000011 Rmu_sc0005807.1_g000002 Rmu_sc0030914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257710 Rroxscaffold_4G00287850
rosa_rugosa	Rorug01G0349100 Rorug07G0047800
rosa_samantha	Rh1AG356000 Rh1BG319600 Rh1CG333600 Rh1DG350300 Rh7AG171600 Rh7BG174400 Rh7CG180000 Rh7DG173500
rosa_wichuraiana	Rw1G031420 Rw7G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AcuI	CTGAAG	2 cut(s)	367, 501
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	654
AflIII	ACRYGT	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	478
AluBI	AGCT	3 cut(s)	144, 492, 536
AluI	AGCT	3 cut(s)	144, 492, 536
Alw21I	GWGCWC	1 cut(s)	538
Ama87I	CYCGRG	1 cut(s)	557
AoxI	GGCC	2 cut(s)	33, 95
ApeKI	GCWGC	3 cut(s)	428, 489, 632
ArsI	GACNNNNNNTTYG	2 cut(s)	297, 329
AspS9I	GGNCC	2 cut(s)	96, 261
AsuC2I	CCSGG	2 cut(s)	558, 559
AsuHPI	GGTGA	2 cut(s)	405, 496
AvaI	CYCGRG	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	538
BarI	GAAGNNNNNNTAC	2 cut(s)	476, 508
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	3 cut(s)	415, 501, 644
BccI	CCATC	2 cut(s)	71, 431
BciVI	GTATCC	1 cut(s)	342
BcnI	CCSGG	2 cut(s)	558, 559
BfaI	CTAG	2 cut(s)	267, 338
BfmI	CTRYAG	1 cut(s)	297
BfuI	GTATCC	1 cut(s)	342
BisI	GCNGC	3 cut(s)	429, 490, 633
BlsI	GCNGC	3 cut(s)	430, 491, 634
Bme1390I	CCNGG	2 cut(s)	558, 559
Bme18I	GGWCC	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	96, 261
BmiI	GGNNCC	2 cut(s)	16, 263
BmrFI	CCNGG	2 cut(s)	558, 559
BpiI	GAAGAC	1 cut(s)	603
BpuMI	CCSGG	2 cut(s)	558, 559
BsaJI	CCNNGG	3 cut(s)	153, 557, 558
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	654
Bse3DI	GCAATG	2 cut(s)	115, 127
BseDI	CCNNGG	3 cut(s)	153, 557, 558
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	654
BseMI	GCAATG	2 cut(s)	115, 127
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	415, 501, 644
BsgI	GTGCAG	2 cut(s)	301, 330
BshFI	GGCC	2 cut(s)	35, 97
BsiHKAI	GWGCWC	1 cut(s)	538
BsiHKCI	CYCGRG	1 cut(s)	557
BsiSI	CCGG	1 cut(s)	558
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	654
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	441
BsnI	GGCC	2 cut(s)	35, 97
BsoBI	CYCGRG	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	538
Bsp19I	CCATGG	1 cut(s)	153
BspANI	GGCC	2 cut(s)	35, 97
BspLI	GGNNCC	2 cut(s)	16, 263
BsrDI	GCAATG	2 cut(s)	115, 127
BssECI	CCNNGG	3 cut(s)	153, 557, 558
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	6 cut(s)	49, 276, 298, 328, 425, 474
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	176, 455
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	442
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 117, 632
BstNSI	RCATGY	1 cut(s)	234
BstSCI	CCNGG	2 cut(s)	556, 557
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	3 cut(s)	415, 501, 644
BstV2I	GAAGAC	1 cut(s)	603
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	35, 97
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	176, 455
Cfr13I	GGNCC	2 cut(s)	96, 261
Cfr9I	CCCGGG	1 cut(s)	557
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	4 cut(s)	154, 231, 378, 395
CviJI	RGCY	8 cut(s)	35, 97, 144, 178, 492, 536, 566, 647
CviKI_1	RGCY	8 cut(s)	35, 97, 144, 178, 492, 536, 566, 647
CviQI	GTAC	1 cut(s)	169
DraI	TTTAAA	1 cut(s)	106
Ecl136II	GAGCTC	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	153
Eco147I	AGGCCT	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	536
Eco57I	CTGAAG	2 cut(s)	367, 501
Eco88I	CYCGRG	1 cut(s)	557
EcoICRI	GAGCTC	1 cut(s)	536
EcoO109I	RGGNCCY	2 cut(s)	96, 261
EcoT14I	CCWWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	4 cut(s)	157, 234, 381, 398
FaiI	YATR	8 cut(s)	88, 93, 155, 232, 353, 379, 396, 664
FalI	AAGNNNNNCTT	4 cut(s)	365, 397, 446, 478
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	4 cut(s)	153, 230, 377, 394
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	429, 490, 633
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	1 cut(s)	538
Fsp4HI	GCNGC	3 cut(s)	429, 490, 633
FspBI	CTAG	2 cut(s)	267, 338
GluI	GCNGC	3 cut(s)	429, 490, 633
HaeIII	GGCC	2 cut(s)	35, 97
HapII	CCGG	1 cut(s)	558
Hin1II	CATG	4 cut(s)	157, 234, 381, 398
HinfI	GANTC	3 cut(s)	203, 569, 641
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	2 cut(s)	405, 496
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	1 cut(s)	574
Hpy188III	TCNNGA	3 cut(s)	207, 434, 523
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	3 cut(s)	337, 478, 571
HpyCH4III	ACNGT	6 cut(s)	49, 276, 298, 328, 425, 474
HpyCH4V	TGCA	7 cut(s)	30, 111, 120, 174, 311, 318, 453
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 117, 632
Hsp92II	CATG	4 cut(s)	157, 234, 381, 398
LmnI	GCTCC	2 cut(s)	533, 541
Lsp1109I	GCAGC	3 cut(s)	415, 501, 644
MaeI	CTAG	2 cut(s)	267, 338
MaeIII	GTNAC	3 cut(s)	82, 240, 346
MboII	GAAGA	1 cut(s)	608
MfeI	CAATTG	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	538
MluCI	AATT	3 cut(s)	65, 191, 251
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	9 cut(s)	151, 160, 189, 289, 349, 419, 427, 512, 610
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	1 cut(s)	558
MspR9I	CCNGG	2 cut(s)	558, 559
MunI	CAATTG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	441
MwoI	GCNNNNNNNGC	3 cut(s)	108, 117, 632
NciI	CCSGG	2 cut(s)	558, 559
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	4 cut(s)	157, 234, 381, 398
NlaIV	GGNNCC	2 cut(s)	16, 263
NmuCI	GTSAC	2 cut(s)	82, 240
NspI	RCATGY	1 cut(s)	234
PceI	AGGCCT	1 cut(s)	35
PciI	ACATGT	1 cut(s)	230
PctI	GAATGC	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	569, 641
PkrI	GCNGC	3 cut(s)	430, 491, 634
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PpuMI	RGGWCCY	1 cut(s)	261
PscI	ACATGT	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	538
Psp5II	RGGWCCY	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	16, 263
PspPI	GGNCC	2 cut(s)	96, 261
PspPPI	RGGWCCY	1 cut(s)	261
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	538
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	3 cut(s)	429, 490, 633
Sau96I	GGNCC	2 cut(s)	96, 261
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	558, 559
SduI	GDGCHC	1 cut(s)	538
SetI	ASST	6 cut(s)	146, 348, 389, 494, 504, 538
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	1 cut(s)	261
SmaI	CCCGGG	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	3 cut(s)	65, 191, 251
SseBI	AGGCCT	1 cut(s)	35
SspMI	CTAG	2 cut(s)	267, 338
SstI	GAGCTC	1 cut(s)	538
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	556, 557
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	6 cut(s)	49, 276, 298, 328, 425, 474
TaqI	TCGA	2 cut(s)	134, 186
TasI	AATT	3 cut(s)	65, 191, 251
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	569, 641
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	2 cut(s)	82, 240
TseI	GCWGC	3 cut(s)	428, 489, 632
Tsp45I	GTSAC	2 cut(s)	82, 240
TspDTI	ATGAA	3 cut(s)	41, 46, 566
TspMI	CCCGGG	1 cut(s)	557
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	261
XceI	RCATGY	1 cut(s)	234
XmaI	CCCGGG	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	2 cut(s)	267, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.