Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001824

Physical Location & Seq

Genomic Coordinates Reverse (-)

52034415 .. 52036037

Gene Structure 1623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCGTTCATTGGAACCCAGCAGAAATGCAAGGCTTGTGATAAGACTGTTCATTTCATTGAACAAGTATCTGCAGATGGTGTTCCCTATCACAAAACCTGCTTTAAATGCAGTCACTGCAATGGACAATTGTCGATGAGCAGCTACTCCGCCATGGAGGGAGTTCTATACTGCAAGCCTCATTTCGAGCAACTCTACAAGGATAGCGCTAGTAAGAAAATTCCAAGTGGGAAACCAAACGAAGTGCTGACTAAGACCCCTAGCAAATTGTCCTTTATGTTCTCTGGGACTCAAGACAAATGTGCCGTCTGCACCAAAACTGTTTATCCATTAGAGAAGGTTACGTTGGAAGGAACGTTTTATCACAAGAACTGCTTTAGGTGTAATCATGGGGGTTGCGCCCTCTCACCCTCAAACTGTGCTGCTCTAGATGGCATTCTATACTGCAAGCACCACTTTTCCCAGTTGTTCAAGGAGAAGGGCAGCTATAACCACCTCACCAAGACTGCTTCTCTGAGGAAGAATGTAGCTCCAGTACCCGAGCCAAAAACCGAGGCAGCTAAGGGAGAAGAACCAAAGGCAGACGCAGGCGTGGAAGCAGGTGAAGCAGAGGCCGCAGCACAGGAGTCACAAGATGCAGCCCAGACGCAAGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

219

Amino Acids

23.93

Weight (kDa)

8.17

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 65	8.3e-12	LIM domain
LIM	PF00412	101 - 157	1.2e-09	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39900 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770
fragaria_vesca	FvH4_5g01960 FvH4_5g01960 FvH4_7g23860 FvH4_7g23860
malus_domestica	MD01G1145700.v1.1 MD06G1078000.v1.1 MD07G1212800.v1.1 MD14G1098800.v1.1
prunus_persica	Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.5G095800_v2.0.a1 Prupe.5G095800_v2.0.a1
pyrus_communis	pycom01g16520 pycom07g19560 pycom14g09680
rosa_chinensis	RchiOBHm_Chr1g0369211 RchiOBHm_Chr7g0198411
rosa_laevigata	RLG00000003869 RLG00000027145
rosa_multiflora	Rmu_sc0001250.1_g000011 Rmu_sc0005807.1_g000002 Rmu_sc0030914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257710 Rroxscaffold_4G00287850
rosa_rugosa	Rorug01G0349100 Rorug07G0047800
rosa_samantha	Rh1AG356000 Rh1BG319600 Rh1CG333600 Rh1DG350300 Rh7AG171600 Rh7BG174400 Rh7CG180000 Rh7DG173500
rosa_wichuraiana	Rw1G031420 Rw7G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	590
Acc36I	ACCTGC	2 cut(s)	107, 590
AciI	CCGC	2 cut(s)	150, 615
AclI	AACGTT	1 cut(s)	356
AcsI	RAATTY	1 cut(s)	219
AfaI	GTAC	1 cut(s)	537
AfeI	AGCGCT	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	62, 472
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	4 cut(s)	144, 486, 530, 560
AluI	AGCT	4 cut(s)	144, 486, 530, 560
AlwNI	CAGNNNCTG	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	539
Aor51HI	AGCGCT	1 cut(s)	208
AoxI	GGCC	1 cut(s)	612
ApeKI	GCWGC	6 cut(s)	141, 422, 483, 557, 617, 638
ApoI	RAATTY	1 cut(s)	219
ArsI	GACNNNNNNTTYG	2 cut(s)	291, 323
AspLEI	GCGC	2 cut(s)	209, 401
AsuHPI	GGTGA	3 cut(s)	399, 490, 614
AvaI	CYCGRG	1 cut(s)	539
BbvI	GCAGC	6 cut(s)	153, 409, 495, 569, 629, 650
BccI	CCATC	2 cut(s)	71, 425
BceAI	ACGGC	1 cut(s)	290
BfaI	CTAG	3 cut(s)	210, 261, 428
BfmI	CTRYAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	210
BfuAI	ACCTGC	2 cut(s)	107, 590
BisI	GCNGC	7 cut(s)	142, 423, 484, 558, 615, 618, 639
BlsI	GCNGC	7 cut(s)	143, 424, 485, 559, 616, 619, 640
BmeT110I	CYCGRG	1 cut(s)	539
BmiI	GGNNCC	1 cut(s)	16
BmrI	ACTGGG	1 cut(s)	457
BmsI	GCATC	1 cut(s)	625
BmuI	ACTGGG	1 cut(s)	457
BoxI	GACNNNNGTC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	153, 552
Bse1I	ACTGG	2 cut(s)	463, 533
Bse3DI	GCAATG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	153, 552
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	2 cut(s)	463, 533
BseXI	GCAGC	6 cut(s)	153, 409, 495, 569, 629, 650
BseYI	CCCAGC	1 cut(s)	18
BsgI	GTGCAG	1 cut(s)	295
BshFI	GGCC	1 cut(s)	614
BsiHKCI	CYCGRG	1 cut(s)	539
BslFI	GGGAC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	614
BsoBI	CYCGRG	1 cut(s)	539
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	150, 615
BspANI	GGCC	1 cut(s)	614
BspCNI	CTCAG	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	16
BspMAI	CTGCAG	1 cut(s)	76
BspMI	ACCTGC	2 cut(s)	107, 590
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	463, 533
BssECI	CCNNGG	2 cut(s)	153, 552
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	3 cut(s)	49, 322, 419
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	176, 449, 589
BstDEI	CTNAG	3 cut(s)	252, 515, 561
BstDSI	CCRYGG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	2 cut(s)	209, 401
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 117, 605, 614
BstPAI	GACNNNNGTC	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	6 cut(s)	153, 409, 495, 569, 629, 650
BsuRI	GGCC	1 cut(s)	614
BtgI	CCRYGG	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	240
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	115
BveI	ACCTGC	2 cut(s)	107, 590
Cac8I	GCNNGC	3 cut(s)	176, 449, 589
CaiI	CAGNNNCTG	1 cut(s)	117
CfoI	GCGC	2 cut(s)	209, 401
CseI	GACGC	2 cut(s)	593, 655
Csp6I	GTAC	1 cut(s)	536
CviAII	CATG	2 cut(s)	154, 389
CviJI	RGCY	9 cut(s)	35, 144, 178, 486, 530, 544, 560, 614, 641
CviKI_1	RGCY	9 cut(s)	35, 144, 178, 486, 530, 544, 560, 614, 641
CviQI	GTAC	1 cut(s)	536
DdeI	CTNAG	3 cut(s)	252, 515, 561
DraI	TTTAAA	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	153
Eco47III	AGCGCT	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	539
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	157, 392
FaiI	YATR	6 cut(s)	155, 169, 278, 390, 442, 489
FalI	AAGNNNNNCTT	4 cut(s)	359, 391, 440, 472
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	2 cut(s)	153, 388
Fnu4HI	GCNGC	7 cut(s)	142, 423, 484, 558, 615, 618, 639
Fsp4HI	GCNGC	7 cut(s)	142, 423, 484, 558, 615, 618, 639
FspBI	CTAG	3 cut(s)	210, 261, 428
GlaI	GCGC	2 cut(s)	208, 400
GluI	GCNGC	7 cut(s)	142, 423, 484, 558, 615, 618, 639
GsaI	CCCAGC	1 cut(s)	22
GsuI	CTGGAG	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	614
HgaI	GACGC	2 cut(s)	593, 655
HhaI	GCGC	2 cut(s)	209, 401
Hin1II	CATG	2 cut(s)	157, 392
Hin6I	GCGC	2 cut(s)	207, 399
HinP1I	GCGC	2 cut(s)	207, 399
HinfI	GANTC	2 cut(s)	289, 626
HphI	GGTGA	3 cut(s)	399, 490, 614
Hpy188I	TCNGA	1 cut(s)	516
Hpy188III	TCNNGA	2 cut(s)	293, 428
HpyAV	CCTTC	3 cut(s)	331, 344, 472
HpyCH4III	ACNGT	3 cut(s)	49, 322, 419
HpyCH4IV	ACGT	2 cut(s)	344, 356
HpyCH4V	TGCA	8 cut(s)	30, 74, 111, 120, 174, 312, 447, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 117, 605, 614
HpyF3I	CTNAG	3 cut(s)	252, 515, 561
HpySE526I	ACGT	2 cut(s)	344, 356
Hsp92II	CATG	2 cut(s)	157, 392
HspAI	GCGC	2 cut(s)	207, 399
LmnI	GCTCC	1 cut(s)	535
LpnPI	CCDG	9 cut(s)	32, 112, 270, 476, 546, 573, 585, 608, 656
Lsp1109I	GCAGC	6 cut(s)	153, 409, 495, 569, 629, 650
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	3 cut(s)	210, 261, 428
MaeII	ACGT	2 cut(s)	344, 356
MaeIII	GTNAC	3 cut(s)	113, 340, 627
MboII	GAAGA	2 cut(s)	532, 581
MfeI	CAATTG	1 cut(s)	128
MluCI	AATT	3 cut(s)	128, 219, 266
MlyI	GAGTC	2 cut(s)	283, 635
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	8 cut(s)	151, 189, 413, 421, 506, 510, 547, 604
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	120
MunI	CAATTG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	435
MwoI	GCNNNNNNNGC	4 cut(s)	108, 117, 605, 614
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	2 cut(s)	157, 392
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	113, 627
PaqCI	CACCTGC	1 cut(s)	590
PctI	GAATGC	1 cut(s)	435
PkrI	GCNGC	7 cut(s)	143, 424, 485, 559, 616, 619, 640
PleI	GAGTC	2 cut(s)	283, 634
PpsI	GAGTC	2 cut(s)	283, 634
PshAI	GACNNNNGTC	1 cut(s)	130
Psp1406I	AACGTT	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	117
RsaI	GTAC	1 cut(s)	537
RsaNI	GTAC	1 cut(s)	536
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	7 cut(s)	142, 423, 484, 558, 615, 618, 639
SchI	GAGTC	2 cut(s)	283, 635
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
Sse9I	AATT	3 cut(s)	128, 219, 266
SsiI	CCGC	2 cut(s)	150, 615
SspMI	CTAG	3 cut(s)	210, 261, 428
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	3 cut(s)	49, 322, 419
TaiI	ACGT	2 cut(s)	347, 359
TaqI	TCGA	2 cut(s)	134, 186
TasI	AATT	3 cut(s)	128, 219, 266
TauI	GCSGC	1 cut(s)	617
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	122
TseFI	GTSAC	2 cut(s)	113, 627
TseI	GCWGC	6 cut(s)	141, 422, 483, 557, 617, 638
Tsp45I	GTSAC	2 cut(s)	113, 627
TspDTI	ATGAA	2 cut(s)	41, 46
TspRI	CASTG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	219
XbaI	TCTAGA	1 cut(s)	427
XspI	CTAG	3 cut(s)	210, 261, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.