Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001824

Physical Location & Seq

Genomic Coordinates Reverse (-)

11754648 .. 11756082

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g09680.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCGTTCAGCGGGACCCAACAGAAATGCAAGGCTTGTGATAAGACTGTTCATTTCATTGACCAGTTATCTGCTGATGGTATTGCCTACCATAAGACCTGCTTCAAATGTAGTCACTGCAATGGACAACTTTCGATGAGTAGCTACTCATCCATGGACGAAGTTCTATATTGCAAGCCTCATTTCGAGCAACTCTTCAAGGAGACTGGCAGCTTTTCTAAGAAATTTCAGACATGTAAGATTCCTTTTCCCATTGCAATTTTCCTGACTAGGACCCCTAGCAAACTGTCCTCTATGTTCTCTGGGACCGTAGACAAATGTGCTGTATGCACCAAAACTGTGTATCCACTAGAGAAGGTTACCATGGAGGGAGCGTTCTATCACAAGTCATGCTTTAGGTGTAACCATGGGGGTTGCTTCCTCTCACCATCAAACTGTGCTGCTTTGGATGGCATTCTTTACTGCAAACACCACTTTGCCCAACTGTTCAAGGAGAAGGGTAGCTACAACCACCTCACCCAGACTGCTTCACTAAAGAAAAATGGAGCTCCGATGCCAGAACTGAAACCTAATGGATCACAAGCAAAACAGGCAGAAGTAACAGAAGAAGCAAAACCAGAAGCAGAAGCAGAAGCAGCCCAAGAGACACAAGATTCAGCCCCACAAGAGCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

226

Amino Acids

24.89

Weight (kDa)

8.15

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39900 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770
fragaria_vesca	FvH4_5g01960 FvH4_5g01960 FvH4_7g23860 FvH4_7g23860
malus_domestica	MD01G1145700.v1.1 MD06G1078000.v1.1 MD07G1212800.v1.1 MD14G1098800.v1.1
prunus_persica	Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.5G095800_v2.0.a1 Prupe.5G095800_v2.0.a1
pyrus_communis	pycom01g16520 pycom07g19560 pycom14g09680
rosa_chinensis	RchiOBHm_Chr1g0369211 RchiOBHm_Chr7g0198411
rosa_laevigata	RLG00000003869 RLG00000027145
rosa_multiflora	Rmu_sc0001250.1_g000011 Rmu_sc0005807.1_g000002 Rmu_sc0030914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257710 Rroxscaffold_4G00287850
rosa_rugosa	Rorug01G0349100 Rorug07G0047800
rosa_samantha	Rh1AG356000 Rh1BG319600 Rh1CG333600 Rh1DG350300 Rh7AG171600 Rh7BG174400 Rh7CG180000 Rh7DG173500
rosa_wichuraiana	Rw1G031420 Rw7G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	312
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	1 cut(s)	583
AcsI	RAATTY	1 cut(s)	224
AflIII	ACRYGT	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	106, 199, 490
AloI	GAACNNNNNNTCC	2 cut(s)	359, 391
AluBI	AGCT	4 cut(s)	144, 213, 504, 548
AluI	AGCT	4 cut(s)	144, 213, 504, 548
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	2 cut(s)	197, 638
AlwI	GGATC	1 cut(s)	583
ApeKI	GCWGC	3 cut(s)	210, 440, 635
ApoI	RAATTY	1 cut(s)	224
AspS9I	GGNCC	3 cut(s)	15, 273, 306
AsuHPI	GGTGA	2 cut(s)	417, 508
AvaII	GGWCC	3 cut(s)	15, 273, 306
BanII	GRGCYC	1 cut(s)	550
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	3 cut(s)	222, 427, 647
BccI	CCATC	3 cut(s)	71, 436, 443
BciVI	GTATCC	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	197, 638
BfaI	CTAG	3 cut(s)	270, 279, 350
BfuAI	ACCTGC	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	354
BisI	GCNGC	3 cut(s)	211, 441, 636
BlsI	GCNGC	3 cut(s)	212, 442, 637
Bme18I	GGWCC	3 cut(s)	15, 273, 306
BmgT120I	GGNCC	3 cut(s)	15, 273, 306
BmiI	GGNNCC	4 cut(s)	16, 17, 275, 307
BmsI	GCATC	1 cut(s)	543
BsaJI	CCNNGG	3 cut(s)	153, 363, 406
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bse1I	ACTGG	2 cut(s)	64, 211
Bse3DI	GCAATG	2 cut(s)	127, 252
BseDI	CCNNGG	3 cut(s)	153, 363, 406
BseGI	GGATG	2 cut(s)	149, 454
BseMI	GCAATG	2 cut(s)	127, 252
BseNI	ACTGG	2 cut(s)	64, 211
BseXI	GCAGC	3 cut(s)	222, 427, 647
BsiHKAI	GWGCWC	1 cut(s)	550
BslFI	GGGAC	2 cut(s)	28, 319
BsmAI	GTCTC	2 cut(s)	197, 638
BsmFI	GGGAC	2 cut(s)	28, 319
BsmI	GAATGC	1 cut(s)	453
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	1 cut(s)	575
Bsp19I	CCATGG	3 cut(s)	153, 363, 406
BspACI	CCGC	1 cut(s)	12
BspHI	TCATGA	1 cut(s)	674
BspLI	GGNNCC	4 cut(s)	16, 17, 275, 307
BspMI	ACCTGC	1 cut(s)	107
BspPI	GGATC	1 cut(s)	583
BsrDI	GCAATG	2 cut(s)	127, 252
BsrI	ACTGG	2 cut(s)	64, 211
BssECI	CCNNGG	3 cut(s)	153, 363, 406
BssMI	GATC	1 cut(s)	575
BssT1I	CCWWGG	3 cut(s)	153, 363, 406
Bst4CI	ACNGT	6 cut(s)	49, 288, 310, 340, 437, 486
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	3 cut(s)	153, 363, 406
BstEII	GGTNACC	1 cut(s)	358
BstF5I	GGATG	2 cut(s)	149, 454
BstKTI	GATC	1 cut(s)	578
BstMAI	GTCTC	2 cut(s)	197, 638
BstMBI	GATC	1 cut(s)	575
BstMWI	GCNNNNNNNGC	2 cut(s)	590, 635
BstNSI	RCATGY	1 cut(s)	237
BstPI	GGTNACC	1 cut(s)	358
BstV1I	GCAGC	3 cut(s)	222, 427, 647
BsuI	GTATCC	1 cut(s)	354
BtgI	CCRYGG	3 cut(s)	153, 363, 406
BtsCI	GGATG	2 cut(s)	149, 454
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	115
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	176
CciI	TCATGA	1 cut(s)	674
Cfr13I	GGNCC	3 cut(s)	15, 273, 306
CviAII	CATG	6 cut(s)	154, 234, 364, 390, 407, 675
CviJI	RGCY	8 cut(s)	35, 144, 178, 213, 504, 548, 638, 659
CviKI_1	RGCY	8 cut(s)	35, 144, 178, 213, 504, 548, 638, 659
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	577
DpnII	GATC	1 cut(s)	575
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Ecl136II	GAGCTC	1 cut(s)	548
Eco130I	CCWWGG	3 cut(s)	153, 363, 406
Eco24I	GRGCYC	1 cut(s)	550
Eco47I	GGWCC	3 cut(s)	15, 273, 306
Eco53kI	GAGCTC	1 cut(s)	548
Eco91I	GGTNACC	1 cut(s)	358
EcoICRI	GAGCTC	1 cut(s)	548
EcoO109I	RGGNCCY	2 cut(s)	15, 273
EcoO65I	GGTNACC	1 cut(s)	358
EcoT14I	CCWWGG	3 cut(s)	153, 363, 406
EcoT38I	GRGCYC	1 cut(s)	550
ErhI	CCWWGG	3 cut(s)	153, 363, 406
FaeI	CATG	6 cut(s)	157, 237, 367, 393, 410, 678
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 377, 409
FaqI	GGGAC	2 cut(s)	28, 319
FatI	CATG	6 cut(s)	153, 233, 363, 389, 406, 674
FauI	CCCGC	1 cut(s)	5
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	211, 441, 636
FokI	GGATG	2 cut(s)	136, 461
FriOI	GRGCYC	1 cut(s)	550
Fsp4HI	GCNGC	3 cut(s)	211, 441, 636
FspBI	CTAG	3 cut(s)	270, 279, 350
GluI	GCNGC	3 cut(s)	211, 441, 636
Hin1II	CATG	6 cut(s)	157, 237, 367, 393, 410, 678
HinfI	GANTC	2 cut(s)	241, 653
HphI	GGTGA	2 cut(s)	417, 508
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	231, 552
Hpy188III	TCNNGA	2 cut(s)	265, 675
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	349, 490
HpyCH4III	ACNGT	6 cut(s)	49, 288, 310, 340, 437, 486
HpyCH4V	TGCA	6 cut(s)	30, 120, 174, 257, 330, 465
HpyF10VI	GCNNNNNNNGC	2 cut(s)	590, 635
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	6 cut(s)	157, 237, 367, 393, 410, 678
KflI	GGGWCCC	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	575
LmnI	GCTCC	3 cut(s)	371, 545, 553
LpnPI	CCDG	9 cut(s)	77, 112, 192, 278, 288, 533, 570, 575, 630
Lsp1109I	GCAGC	3 cut(s)	222, 427, 647
LweI	GCATC	1 cut(s)	543
MaeI	CTAG	3 cut(s)	270, 279, 350
MaeIII	GTNAC	4 cut(s)	113, 358, 401, 598
MalI	GATC	1 cut(s)	577
MboI	GATC	1 cut(s)	575
MboII	GAAGA	2 cut(s)	187, 617
MhlI	GDGCHC	1 cut(s)	550
MluCI	AATT	2 cut(s)	224, 258
MnlI	CCTC	5 cut(s)	189, 301, 361, 431, 524
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	590, 635
NcoI	CCATGG	3 cut(s)	153, 363, 406
NdeII	GATC	1 cut(s)	575
NlaIII	CATG	6 cut(s)	157, 237, 367, 393, 410, 678
NlaIV	GGNNCC	4 cut(s)	16, 17, 275, 307
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	237
PagI	TCATGA	1 cut(s)	674
PciI	ACATGT	1 cut(s)	233
PctI	GAATGC	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	241, 653
PkrI	GCNGC	3 cut(s)	212, 442, 637
PpuMI	RGGWCCY	2 cut(s)	15, 273
PscI	ACATGT	1 cut(s)	233
Psp124BI	GAGCTC	1 cut(s)	550
Psp5II	RGGWCCY	2 cut(s)	15, 273
PspEI	GGTNACC	1 cut(s)	358
PspN4I	GGNNCC	4 cut(s)	16, 17, 275, 307
PspPI	GGNCC	3 cut(s)	15, 273, 306
PspPPI	RGGWCCY	2 cut(s)	15, 273
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	550
SatI	GCNGC	3 cut(s)	211, 441, 636
Sau3AI	GATC	1 cut(s)	575
Sau96I	GGNCC	3 cut(s)	15, 273, 306
SduI	GDGCHC	1 cut(s)	550
SetI	ASST	9 cut(s)	101, 146, 215, 360, 401, 506, 516, 550, 571
SfaNI	GCATC	1 cut(s)	543
SinI	GGWCC	3 cut(s)	15, 273, 306
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	224, 258
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	3 cut(s)	270, 279, 350
SstI	GAGCTC	1 cut(s)	550
StyI	CCWWGG	3 cut(s)	153, 363, 406
TaaI	ACNGT	6 cut(s)	49, 288, 310, 340, 437, 486
TaqI	TCGA	2 cut(s)	134, 186
TasI	AATT	2 cut(s)	224, 258
TfiI	GAWTC	2 cut(s)	241, 653
TscAI	CASTG	1 cut(s)	122
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	3 cut(s)	210, 440, 635
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	41, 46
TspRI	CASTG	1 cut(s)	122
VpaK11BI	GGWCC	3 cut(s)	15, 273, 306
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	1 cut(s)	237
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	3 cut(s)	270, 279, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.