Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001250.1

Orthogroup ID

OG0001824

Physical Location & Seq

Genomic Coordinates Reverse (-)

52169 .. 53592

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001250.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgtcgttcattggaacccagcagaaatgcaaggcttgtgataagactgttcatttcattgaacaagtatctgcagatggtgttccctatcacaaaacctgctttaaatgcagtcactgcaatggacaattgtcgatgagcagctactccgccatggagggagttctatactgcaagcctcatttcgagcaactctacaaggatagcgctagtgggaaaccaaacgaagtgctgactaagacccctagcaaattgtcctttatgttctctgggactcaagacaaatgtgccgtctgcaccaaaactgtttatccattagagaaggttacgttggaaggaacgttttaccacaagaactgctttaggtgtaatcatgggggttgcgctctctcaccctcaaactgtgctgctctagatggcattctatactgcaagcaccacttttcccagttgttcaaggagaagggcagctacaaccacctcaccaagactgcttctctgaggaaaaatgtagctccattacccgagccaaaaaccgaggcagctgagggagaagaaccaaaggcagacgcaggagtggaagcaggtgaagcagaggccgcagcacaggagtcacaagatgcagcccagacgcaagagcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

214

Amino Acids

23.4

Weight (kDa)

6.74

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39900 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770
fragaria_vesca	FvH4_5g01960 FvH4_5g01960 FvH4_7g23860 FvH4_7g23860
malus_domestica	MD01G1145700.v1.1 MD06G1078000.v1.1 MD07G1212800.v1.1 MD14G1098800.v1.1
prunus_persica	Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.5G095800_v2.0.a1 Prupe.5G095800_v2.0.a1
pyrus_communis	pycom01g16520 pycom07g19560 pycom14g09680
rosa_chinensis	RchiOBHm_Chr1g0369211 RchiOBHm_Chr7g0198411
rosa_laevigata	RLG00000003869 RLG00000027145
rosa_multiflora	Rmu_sc0001250.1_g000011 Rmu_sc0005807.1_g000002 Rmu_sc0030914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257710 Rroxscaffold_4G00287850
rosa_rugosa	Rorug01G0349100 Rorug07G0047800
rosa_samantha	Rh1AG356000 Rh1BG319600 Rh1CG333600 Rh1DG350300 Rh7AG171600 Rh7BG174400 Rh7CG180000 Rh7DG173500
rosa_wichuraiana	Rw1G031420 Rw7G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	575
Acc36I	ACCTGC	2 cut(s)	107, 575
AciI	CCGC	2 cut(s)	150, 600
AclI	AACGTT	1 cut(s)	341
AfeI	AGCGCT	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	62, 457
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	4 cut(s)	144, 471, 515, 545
AluI	AGCT	4 cut(s)	144, 471, 515, 545
AlwNI	CAGNNNCTG	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	524
Aor51HI	AGCGCT	1 cut(s)	208
AoxI	GGCC	1 cut(s)	597
ApeKI	GCWGC	6 cut(s)	141, 407, 468, 542, 602, 623
ArsI	GACNNNNNNTTYG	2 cut(s)	276, 308
AspLEI	GCGC	2 cut(s)	209, 386
AsuHPI	GGTGA	3 cut(s)	384, 475, 599
AvaI	CYCGRG	1 cut(s)	524
BarI	GAAGNNNNNNTAC	2 cut(s)	455, 487
BbvCI	CCTCAGC	1 cut(s)	546
BbvI	GCAGC	6 cut(s)	153, 394, 480, 554, 614, 635
BccI	CCATC	2 cut(s)	71, 410
BceAI	ACGGC	1 cut(s)	275
BfaI	CTAG	3 cut(s)	210, 246, 413
BfmI	CTRYAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	210
BfuAI	ACCTGC	2 cut(s)	107, 575
BisI	GCNGC	7 cut(s)	142, 408, 469, 543, 600, 603, 624
BlsI	GCNGC	7 cut(s)	143, 409, 470, 544, 601, 604, 625
BmeT110I	CYCGRG	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	16
BmrI	ACTGGG	1 cut(s)	442
BmsI	GCATC	1 cut(s)	610
BmuI	ACTGGG	1 cut(s)	442
BoxI	GACNNNNGTC	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	153, 537
Bse1I	ACTGG	1 cut(s)	448
Bse3DI	GCAATG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	153, 537
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	491, 537
BseNI	ACTGG	1 cut(s)	448
BseXI	GCAGC	6 cut(s)	153, 394, 480, 554, 614, 635
BseYI	CCCAGC	1 cut(s)	18
BsgI	GTGCAG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	599
BsiHKCI	CYCGRG	1 cut(s)	524
BslFI	GGGAC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	599
BsoBI	CYCGRG	1 cut(s)	524
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	150, 600
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	2 cut(s)	492, 538
BspLI	GGNNCC	1 cut(s)	16
BspMAI	CTGCAG	1 cut(s)	76
BspMI	ACCTGC	2 cut(s)	107, 575
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	448
BssECI	CCNNGG	2 cut(s)	153, 537
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	3 cut(s)	49, 307, 404
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	176, 434
BstDEI	CTNAG	3 cut(s)	237, 500, 546
BstDSI	CCRYGG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	2 cut(s)	209, 386
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 117, 590, 599
BstPAI	GACNNNNGTC	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	6 cut(s)	153, 394, 480, 554, 614, 635
BsuRI	GGCC	1 cut(s)	599
BtgI	CCRYGG	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	115
BveI	ACCTGC	2 cut(s)	107, 575
Cac8I	GCNNGC	2 cut(s)	176, 434
CaiI	CAGNNNCTG	1 cut(s)	117
CfoI	GCGC	2 cut(s)	209, 386
CseI	GACGC	2 cut(s)	578, 640
CviAII	CATG	2 cut(s)	154, 374
CviJI	RGCY	9 cut(s)	35, 144, 178, 471, 515, 529, 545, 599, 626
CviKI_1	RGCY	9 cut(s)	35, 144, 178, 471, 515, 529, 545, 599, 626
DdeI	CTNAG	3 cut(s)	237, 500, 546
DraI	TTTAAA	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	153
Eco47III	AGCGCT	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	524
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	157, 377
FaiI	YATR	5 cut(s)	155, 169, 263, 375, 427
FalI	AAGNNNNNCTT	4 cut(s)	344, 376, 425, 457
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	2 cut(s)	153, 373
Fnu4HI	GCNGC	7 cut(s)	142, 408, 469, 543, 600, 603, 624
Fsp4HI	GCNGC	7 cut(s)	142, 408, 469, 543, 600, 603, 624
FspBI	CTAG	3 cut(s)	210, 246, 413
GlaI	GCGC	2 cut(s)	208, 385
GluI	GCNGC	7 cut(s)	142, 408, 469, 543, 600, 603, 624
GsaI	CCCAGC	1 cut(s)	22
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	599
HgaI	GACGC	2 cut(s)	578, 640
HhaI	GCGC	2 cut(s)	209, 386
Hin1II	CATG	2 cut(s)	157, 377
Hin6I	GCGC	2 cut(s)	207, 384
HinP1I	GCGC	2 cut(s)	207, 384
HinfI	GANTC	2 cut(s)	274, 611
HphI	GGTGA	3 cut(s)	384, 475, 599
Hpy188I	TCNGA	1 cut(s)	501
Hpy188III	TCNNGA	2 cut(s)	278, 413
HpyAV	CCTTC	3 cut(s)	316, 329, 457
HpyCH4III	ACNGT	3 cut(s)	49, 307, 404
HpyCH4IV	ACGT	2 cut(s)	329, 341
HpyCH4V	TGCA	8 cut(s)	30, 74, 111, 120, 174, 297, 432, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 117, 590, 599
HpyF3I	CTNAG	3 cut(s)	237, 500, 546
HpySE526I	ACGT	2 cut(s)	329, 341
Hsp92II	CATG	2 cut(s)	157, 377
HspAI	GCGC	2 cut(s)	207, 384
LmnI	GCTCC	1 cut(s)	520
LpnPI	CCDG	8 cut(s)	32, 112, 255, 461, 558, 570, 593, 641
Lsp1109I	GCAGC	6 cut(s)	153, 394, 480, 554, 614, 635
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	3 cut(s)	210, 246, 413
MaeII	ACGT	2 cut(s)	329, 341
MaeIII	GTNAC	3 cut(s)	113, 325, 612
MboII	GAAGA	1 cut(s)	566
MfeI	CAATTG	1 cut(s)	128
MluCI	AATT	2 cut(s)	128, 251
MlyI	GAGTC	2 cut(s)	268, 620
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	8 cut(s)	151, 189, 406, 491, 495, 532, 541, 589
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	545
MunI	CAATTG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	420
MwoI	GCNNNNNNNGC	4 cut(s)	108, 117, 590, 599
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	2 cut(s)	157, 377
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	113, 612
PaqCI	CACCTGC	1 cut(s)	575
PctI	GAATGC	1 cut(s)	420
PkrI	GCNGC	7 cut(s)	143, 409, 470, 544, 601, 604, 625
PleI	GAGTC	2 cut(s)	268, 619
PpsI	GAGTC	2 cut(s)	268, 619
PshAI	GACNNNNGTC	1 cut(s)	130
Psp1406I	AACGTT	1 cut(s)	341
PspFI	CCCAGC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	117
PvuII	CAGCTG	1 cut(s)	545
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	7 cut(s)	142, 408, 469, 543, 600, 603, 624
SchI	GAGTC	2 cut(s)	268, 620
SfaNI	GCATC	1 cut(s)	610
SfcI	CTRYAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	2 cut(s)	128, 251
SsiI	CCGC	2 cut(s)	150, 600
SspMI	CTAG	3 cut(s)	210, 246, 413
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	3 cut(s)	49, 307, 404
TaiI	ACGT	2 cut(s)	332, 344
TaqI	TCGA	2 cut(s)	134, 186
TasI	AATT	2 cut(s)	128, 251
TauI	GCSGC	1 cut(s)	602
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	122
TseFI	GTSAC	2 cut(s)	113, 612
TseI	GCWGC	6 cut(s)	141, 407, 468, 542, 602, 623
Tsp45I	GTSAC	2 cut(s)	113, 612
TspDTI	ATGAA	2 cut(s)	41, 46
TspRI	CASTG	1 cut(s)	122
XbaI	TCTAGA	1 cut(s)	412
XspI	CTAG	3 cut(s)	210, 246, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.