Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001824

Physical Location & Seq

Genomic Coordinates Reverse (-)

53766209 .. 53767631

Gene Structure 1423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003869

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTCGTTCATTGGAACCCAGCAGAAATGCAAGGCTTGTGATAAGACTGTTCATTTCATTGAACAAGTATCGGCAGATGGTGTTCCCTATCACAAAACCTGCTTTAAATGCAGTCACTGCAATGGACAATTGTCGATGAGCAGCTACTCCGCCATGGAGGGAGTTCTATACTGCAAGCCTCATTTCGAGCAACTCTACAAGGATAGTGCTAGTAAGAAAATTCCAAGTAAGTGGGAAACCAAACGAAGTGCTGGTACACGTCTTATCCTTTTAATTCAATATCATCTGCATCGTATACCTATATATTTATATTATATATTGACTAAGACCCCTAGCAAATTGTCCTTTATGTTCTCTGGGACTCAAGACAAATGTGCCGTCTGCACCAAAACTGTTTATCCATTAGAGAAGGTTACGTTGGAAGGAACGTTTTACCACAAGAACTGTTTTAGGTGTAATCATGGGGGTTGCGCCCTCTCACCCTCAAACTGTGCTGCTCTAGATGGCATTCTATACTGCAAGCACCACTTTTCCCAGTTGTTCAAGGAGAAGGGCAGCTACAACCACCTCACCAAGACTGCTTCTCTGAGGAAGAATGTAGCTCCAGTACCCGAGCCAAAAACCGAGGCAGCTAAGGGAGAAGAACCAAAGGCAGACGCAGGCGTGGAAGCAGGTGAAGCAGAGGCCGCAGCACAGGAGTCACAAGATGCAGCCCAGACGCAAGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

244

Amino Acids

27.05

Weight (kDa)

8.69

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 65	9.9e-12	LIM domain
LIM	PF00412	125 - 181	1.5e-09	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39900 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770
fragaria_vesca	FvH4_5g01960 FvH4_5g01960 FvH4_7g23860 FvH4_7g23860
malus_domestica	MD01G1145700.v1.1 MD06G1078000.v1.1 MD07G1212800.v1.1 MD14G1098800.v1.1
prunus_persica	Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.5G095800_v2.0.a1 Prupe.5G095800_v2.0.a1
pyrus_communis	pycom01g16520 pycom07g19560 pycom14g09680
rosa_chinensis	RchiOBHm_Chr1g0369211 RchiOBHm_Chr7g0198411
rosa_laevigata	RLG00000003869 RLG00000027145
rosa_multiflora	Rmu_sc0001250.1_g000011 Rmu_sc0005807.1_g000002 Rmu_sc0030914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257710 Rroxscaffold_4G00287850
rosa_rugosa	Rorug01G0349100 Rorug07G0047800
rosa_samantha	Rh1AG356000 Rh1BG319600 Rh1CG333600 Rh1DG350300 Rh7AG171600 Rh7BG174400 Rh7CG180000 Rh7DG173500
rosa_wichuraiana	Rw1G031420 Rw7G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	662
Acc36I	ACCTGC	2 cut(s)	107, 662
AccI	GTMKAC	1 cut(s)	295
AciI	CCGC	2 cut(s)	150, 687
AclI	AACGTT	1 cut(s)	428
AcsI	RAATTY	1 cut(s)	219
AfaI	GTAC	2 cut(s)	256, 609
AflIII	ACRYGT	1 cut(s)	257
AgsI	TTSAA	3 cut(s)	62, 278, 544
AjiI	CACGTC	1 cut(s)	260
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	4 cut(s)	144, 558, 602, 632
AluI	AGCT	4 cut(s)	144, 558, 602, 632
AlwNI	CAGNNNCTG	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	1 cut(s)	684
ApeKI	GCWGC	6 cut(s)	141, 494, 555, 629, 689, 710
ApoI	RAATTY	1 cut(s)	219
ArsI	GACNNNNNNTTYG	2 cut(s)	363, 395
AspLEI	GCGC	1 cut(s)	473
AsuHPI	GGTGA	3 cut(s)	471, 562, 686
AvaI	CYCGRG	1 cut(s)	611
BarI	GAAGNNNNNNTAC	4 cut(s)	238, 270, 542, 574
BbvI	GCAGC	6 cut(s)	153, 481, 567, 641, 701, 722
BccI	CCATC	2 cut(s)	71, 497
BceAI	ACGGC	1 cut(s)	362
BfaI	CTAG	3 cut(s)	210, 333, 500
BfuAI	ACCTGC	2 cut(s)	107, 662
BisI	GCNGC	7 cut(s)	142, 495, 556, 630, 687, 690, 711
BlsI	GCNGC	7 cut(s)	143, 496, 557, 631, 688, 691, 712
BmeT110I	CYCGRG	1 cut(s)	611
BmgBI	CACGTC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	16
BmrI	ACTGGG	1 cut(s)	529
BmsI	GCATC	2 cut(s)	298, 697
BmuI	ACTGGG	1 cut(s)	529
BoxI	GACNNNNGTC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	588
Bpu10I	CCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	153, 624
Bse1I	ACTGG	2 cut(s)	535, 605
Bse3DI	GCAATG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	153, 624
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	578
BseNI	ACTGG	2 cut(s)	535, 605
BseXI	GCAGC	6 cut(s)	153, 481, 567, 641, 701, 722
BseYI	CCCAGC	1 cut(s)	18
BsgI	GTGCAG	1 cut(s)	367
BshFI	GGCC	1 cut(s)	686
BsiHKCI	CYCGRG	1 cut(s)	611
BslFI	GGGAC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	373
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	1 cut(s)	686
BsoBI	CYCGRG	1 cut(s)	611
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	150, 687
BspANI	GGCC	1 cut(s)	686
BspCNI	CTCAG	1 cut(s)	579
BspLI	GGNNCC	1 cut(s)	16
BspMI	ACCTGC	2 cut(s)	107, 662
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	535, 605
BssECI	CCNNGG	2 cut(s)	153, 624
BssNAI	GTATAC	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	153
Bst1107I	GTATAC	1 cut(s)	296
Bst4CI	ACNGT	4 cut(s)	49, 394, 446, 491
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	176, 521, 661
BstDEI	CTNAG	3 cut(s)	324, 587, 633
BstDSI	CCRYGG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	473
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 117, 677, 686
BstPAI	GACNNNNGTC	1 cut(s)	130
BstV1I	GCAGC	6 cut(s)	153, 481, 567, 641, 701, 722
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstZ17I	GTATAC	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	686
BtgI	CCRYGG	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	260
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	115
BveI	ACCTGC	2 cut(s)	107, 662
Cac8I	GCNNGC	3 cut(s)	176, 521, 661
CaiI	CAGNNNCTG	1 cut(s)	117
CfoI	GCGC	1 cut(s)	473
CseI	GACGC	2 cut(s)	665, 727
Csp6I	GTAC	2 cut(s)	255, 608
CviAII	CATG	2 cut(s)	154, 461
CviJI	RGCY	9 cut(s)	35, 144, 178, 558, 602, 616, 632, 686, 713
CviKI_1	RGCY	9 cut(s)	35, 144, 178, 558, 602, 616, 632, 686, 713
CviQI	GTAC	2 cut(s)	255, 608
DdeI	CTNAG	3 cut(s)	324, 587, 633
DraI	TTTAAA	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	611
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	157, 464
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	2 cut(s)	153, 460
FblI	GTMKAC	1 cut(s)	295
Fnu4HI	GCNGC	7 cut(s)	142, 495, 556, 630, 687, 690, 711
Fsp4HI	GCNGC	7 cut(s)	142, 495, 556, 630, 687, 690, 711
FspBI	CTAG	3 cut(s)	210, 333, 500
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	7 cut(s)	142, 495, 556, 630, 687, 690, 711
GsaI	CCCAGC	1 cut(s)	22
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	1 cut(s)	686
HgaI	GACGC	2 cut(s)	665, 727
HhaI	GCGC	1 cut(s)	473
Hin1II	CATG	2 cut(s)	157, 464
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HinfI	GANTC	2 cut(s)	361, 698
HphI	GGTGA	3 cut(s)	471, 562, 686
Hpy166II	GTNNAC	2 cut(s)	257, 296
Hpy188I	TCNGA	1 cut(s)	588
Hpy188III	TCNNGA	2 cut(s)	365, 500
Hpy8I	GTNNAC	2 cut(s)	257, 296
HpyAV	CCTTC	3 cut(s)	403, 416, 544
HpyCH4III	ACNGT	4 cut(s)	49, 394, 446, 491
HpyCH4IV	ACGT	3 cut(s)	259, 416, 428
HpyCH4V	TGCA	8 cut(s)	30, 111, 120, 174, 289, 384, 519, 710
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 117, 677, 686
HpyF3I	CTNAG	3 cut(s)	324, 587, 633
HpySE526I	ACGT	3 cut(s)	259, 416, 428
Hsp92II	CATG	2 cut(s)	157, 464
HspAI	GCGC	1 cut(s)	471
LmnI	GCTCC	1 cut(s)	607
Lsp1109I	GCAGC	6 cut(s)	153, 481, 567, 641, 701, 722
LweI	GCATC	2 cut(s)	298, 697
MaeI	CTAG	3 cut(s)	210, 333, 500
MaeII	ACGT	3 cut(s)	259, 416, 428
MaeIII	GTNAC	3 cut(s)	113, 412, 699
MboII	GAAGA	2 cut(s)	604, 653
MfeI	CAATTG	1 cut(s)	128
MluCI	AATT	4 cut(s)	128, 219, 273, 338
MlyI	GAGTC	2 cut(s)	355, 707
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	8 cut(s)	151, 189, 485, 493, 578, 582, 619, 676
MseI	TTAA	2 cut(s)	105, 272
MslI	CAYNNNNRTG	1 cut(s)	120
MunI	CAATTG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	507
MwoI	GCNNNNNNNGC	4 cut(s)	108, 117, 677, 686
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	2 cut(s)	157, 464
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	113, 699
PaqCI	CACCTGC	1 cut(s)	662
PctI	GAATGC	1 cut(s)	507
PkrI	GCNGC	7 cut(s)	143, 496, 557, 631, 688, 691, 712
PleI	GAGTC	2 cut(s)	355, 706
PpsI	GAGTC	2 cut(s)	355, 706
PshAI	GACNNNNGTC	1 cut(s)	130
Psp1406I	AACGTT	1 cut(s)	428
PspFI	CCCAGC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	16
PstNI	CAGNNNCTG	1 cut(s)	117
RsaI	GTAC	2 cut(s)	256, 609
RsaNI	GTAC	2 cut(s)	255, 608
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	105, 272
SatI	GCNGC	7 cut(s)	142, 495, 556, 630, 687, 690, 711
SchI	GAGTC	2 cut(s)	355, 707
SfaNI	GCATC	2 cut(s)	298, 697
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	4 cut(s)	128, 219, 273, 338
SsiI	CCGC	2 cut(s)	150, 687
SspMI	CTAG	3 cut(s)	210, 333, 500
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	4 cut(s)	49, 394, 446, 491
TaiI	ACGT	3 cut(s)	262, 419, 431
TaqI	TCGA	2 cut(s)	134, 186
TasI	AATT	4 cut(s)	128, 219, 273, 338
TauI	GCSGC	1 cut(s)	689
Tru1I	TTAA	2 cut(s)	105, 272
Tru9I	TTAA	2 cut(s)	105, 272
TscAI	CASTG	1 cut(s)	122
TseFI	GTSAC	2 cut(s)	113, 699
TseI	GCWGC	6 cut(s)	141, 494, 555, 629, 689, 710
Tsp45I	GTSAC	2 cut(s)	113, 699
TspDTI	ATGAA	2 cut(s)	41, 46
TspRI	CASTG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	219
XbaI	TCTAGA	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	295
XspI	CTAG	3 cut(s)	210, 333, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.