pycom07g19560

Pollen-specific protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
21893271 .. 21894778
1508 bp
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UTR
Exon/CDS
Intron
pycom07g19560.4

Sequence Viewer

Length: 363 bp
ATGTCTTTCATTGGCACCCAGCAGAAATGCAAGGCTTGTGAAAAGACAGTTTACCCAGTGGAGGAGCTTTCTGCTGATGGGATTTCCTACCACAAGTCTTGCTTCAAATGCACCCACTGCAAAGGGACTTTGAAGCTGAGCAATTTTTCCTCAATGGAAGGTGTCCTGTACTGTAAGCCTCACTTTGAGCAACTGTTCAAGGAGACTGGCAATTTCAACAAGAACTTTCAGTCGCCTGCAAAGTCAGCTGAGAAGTTAACTCCAGAGCTGACTAGATCACCTAGCAAAGCTGCTAGCATGTTTTCTGGAACACAAGACAAATGTGCTACTTGTGGTAAACAGCTTACCCATTGGAGAAGGTGA

Protein Analysis

121

Amino Acids

13.47

Weight (kDa)

9.16

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 4 cut(s) 106, 133, 199, 217
AluBI AGCT 6 cut(s) 67, 136, 248, 268, 290, 343
AluI AGCT 6 cut(s) 67, 136, 248, 268, 290, 343
Alw26I GTCTC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 270
AsuNHI GCTAGC 1 cut(s) 293
BanI GGYRCC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 3 cut(s) 273, 282, 294
BisI GCNGC 1 cut(s) 291
BlpI GCTNAGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 16
BmrI ACTGGG 1 cut(s) 50
BmtI GCTAGC 1 cut(s) 297
BmuI ACTGGG 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 246
Bpu1102I GCTNAGC 1 cut(s) 137
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 56, 211
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 128, 240
BseNI ACTGG 2 cut(s) 56, 211
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 277
BseYI CCCAGC 1 cut(s) 18
BshNI GGYRCC 1 cut(s) 14
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 275
Bsp1720I GCTNAGC 1 cut(s) 137
BspCNI CTCAG 2 cut(s) 129, 241
BspLI GGNNCC 1 cut(s) 16
BspOI GCTAGC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 14
BsrI ACTGG 2 cut(s) 56, 211
BssMI GATC 1 cut(s) 275
Bst4CI ACNGT 3 cut(s) 49, 173, 195
BstAPI GCANNNNNTGC 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 237, 295
BstDEI CTNAG 2 cut(s) 137, 249
BstKTI GATC 1 cut(s) 278
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 275
BstMWI GCNNNNNNNGC 3 cut(s) 108, 117, 245
BstNSI RCATGY 1 cut(s) 301
BstV1I GCAGC 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 2 cut(s) 63, 115
Cac8I GCNNGC 2 cut(s) 237, 295
Csp6I GTAC 1 cut(s) 169
CspCI CAANNNNNGTGG 2 cut(s) 80, 115
CviAII CATG 1 cut(s) 298
CviJI RGCY 8 cut(s) 35, 67, 136, 178, 248, 268, 290, 343
CviKI_1 RGCY 8 cut(s) 35, 67, 136, 178, 248, 268, 290, 343
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 137, 249
DpnI GATC 1 cut(s) 277
DpnII GATC 1 cut(s) 275
FaeI CATG 1 cut(s) 301
FaiI YATR 1 cut(s) 299
FalI AAGNNNNNCTT 4 cut(s) 86, 118, 167, 199
FaqI GGGAC 1 cut(s) 139
FatI CATG 1 cut(s) 297
Fnu4HI GCNGC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 291
FspBI CTAG 3 cut(s) 273, 282, 294
GluI GCNGC 1 cut(s) 291
GsaI CCCAGC 1 cut(s) 22
GsuI CTGGAG 1 cut(s) 246
Hin1II CATG 1 cut(s) 301
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HpaI GTTAAC 1 cut(s) 258
HphI GGTGA 1 cut(s) 270
Hpy166II GTNNAC 3 cut(s) 52, 258, 338
Hpy188III TCNNGA 2 cut(s) 263, 306
Hpy8I GTNNAC 3 cut(s) 52, 258, 338
HpyAV CCTTC 2 cut(s) 152, 351
HpyCH4III ACNGT 3 cut(s) 49, 173, 195
HpyCH4V TGCA 4 cut(s) 30, 111, 120, 239
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 117, 245
HpyF3I CTNAG 2 cut(s) 137, 249
Hsp92II CATG 1 cut(s) 301
KspAI GTTAAC 1 cut(s) 258
Kzo9I GATC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 7 cut(s) 32, 69, 179, 192, 249, 276, 291
Lsp1109I GCAGC 1 cut(s) 277
MaeI CTAG 3 cut(s) 273, 282, 294
MalI GATC 1 cut(s) 277
MboI GATC 1 cut(s) 275
MluCI AATT 2 cut(s) 142, 211
MnlI CCTC 3 cut(s) 55, 160, 189
MseI TTAA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 248
MwoI GCNNNNNNNGC 3 cut(s) 108, 117, 245
NdeII GATC 1 cut(s) 275
NheI GCTAGC 1 cut(s) 293
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 1 cut(s) 16
NspI RCATGY 1 cut(s) 301
PkrI GCNGC 1 cut(s) 292
PspFI CCCAGC 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 1 cut(s) 275
SetI ASST 9 cut(s) 69, 138, 163, 250, 270, 283, 292, 345, 362
Sse9I AATT 2 cut(s) 142, 211
SspMI CTAG 3 cut(s) 273, 282, 294
TaaI ACNGT 3 cut(s) 49, 173, 195
TasI AATT 2 cut(s) 142, 211
TatI WGTACW 1 cut(s) 168
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TscAI CASTG 2 cut(s) 63, 122
TseI GCWGC 1 cut(s) 290
TspRI CASTG 2 cut(s) 63, 122
XceI RCATGY 1 cut(s) 301
XspI CTAG 3 cut(s) 273, 282, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.