Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001824

Physical Location & Seq

Genomic Coordinates Reverse (-)

25554529 .. 25557242

Gene Structure 2714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1145700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCTTTCATTGGCACCCAGCAGAAATGCAAGGCTTGTGAAAAGACAGTTTACCCAGTGGAGGAGCTATCTGCTGATGGGATTTCCTACCACAAGTCTTGCTTCAAATGCACCCACTGCAAAGGGACTTTGAAGCTGAGCAATTATTCCTCAATGGAAGGTGTTCTATACTGTAAGCCTCACTTTGAGCAACTTTTCAAGGAGACTGGCAATTTCAACAAGAACTTTCAGTCACCTGCAAAGTCAGCTGAGAAGTTAACTCCAGAGCTGACTAGGTCTCCTAGCAAAGCTGCTAGCATGTTTTCTGGAACACAAGACAAATGTGCTACTTGTGGTAAAACCGCTTATCCACTGGAGAAGGTGACTGTGGAGAGCCAGGCCTATCACAAGTCGTGTTTCAAGTGTTCTCACGGCGGCTGTCCTATTACTCCCTCAAACTACGCGGCTTTGGAGGGCATTCTATACTGCAAGCACCATTTCTCCCAGCTTTTCAAGGAGAAGGGGAGCTACAACCATCTTATTAAGTCTGCATCAATTAAGCGCACAGCAGCGGCGGCGGCGGCAGCAACAGCAGCAGTAGCCTCCATTCCAGAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

200

Amino Acids

21.65

Weight (kDa)

9.01

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 66	3.3e-12	LIM domain
LIM	PF00412	108 - 164	1.7e-10	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39900 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770
fragaria_vesca	FvH4_5g01960 FvH4_5g01960 FvH4_7g23860 FvH4_7g23860
malus_domestica	MD01G1145700.v1.1 MD06G1078000.v1.1 MD07G1212800.v1.1 MD14G1098800.v1.1
prunus_persica	Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.5G095800_v2.0.a1 Prupe.5G095800_v2.0.a1
pyrus_communis	pycom01g16520 pycom07g19560 pycom14g09680
rosa_chinensis	RchiOBHm_Chr1g0369211 RchiOBHm_Chr7g0198411
rosa_laevigata	RLG00000003869 RLG00000027145
rosa_multiflora	Rmu_sc0001250.1_g000011 Rmu_sc0005807.1_g000002 Rmu_sc0030914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257710 Rroxscaffold_4G00287850
rosa_rugosa	Rorug01G0349100 Rorug07G0047800
rosa_samantha	Rh1AG356000 Rh1BG319600 Rh1CG333600 Rh1DG350300 Rh7AG171600 Rh7BG174400 Rh7CG180000 Rh7DG173500
rosa_wichuraiana	Rw1G031420 Rw7G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	14
AccII	CGCG	1 cut(s)	443
AciI	CCGC	7 cut(s)	342, 414, 443, 551, 554, 557, 560
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	6 cut(s)	106, 133, 199, 217, 400, 493
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	7 cut(s)	67, 136, 248, 268, 290, 487, 507
AluI	AGCT	7 cut(s)	67, 136, 248, 268, 290, 487, 507
Alw26I	GTCTC	2 cut(s)	197, 282
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	4 cut(s)	290, 548, 563, 572
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	543
AsuHPI	GGTGA	2 cut(s)	225, 373
AsuNHI	GCTAGC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	14
BarI	GAAGNNNNNNTAC	2 cut(s)	491, 523
BbvI	GCAGC	4 cut(s)	277, 560, 575, 584
BccI	CCATC	2 cut(s)	71, 522
BceAI	ACGGC	1 cut(s)	427
BciT130I	CCWGG	1 cut(s)	377
BcoDI	GTCTC	2 cut(s)	197, 282
BfaI	CTAG	3 cut(s)	273, 282, 294
BfuAI	ACCTGC	1 cut(s)	244
BlpI	GCTNAGC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	377
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	539
BmtI	GCTAGC	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	50
BpmI	CTGGAG	2 cut(s)	246, 374
Bpu1102I	GCTNAGC	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	282
BsaXI	ACNNNNNCTCC	4 cut(s)	262, 292, 464, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	3 cut(s)	56, 211, 357
BseBI	CCWGG	1 cut(s)	377
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	128, 240
BseNI	ACTGG	3 cut(s)	56, 211, 357
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	4 cut(s)	277, 560, 575, 584
BseYI	CCCAGC	2 cut(s)	18, 483
Bsh1236I	CGCG	1 cut(s)	443
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	197, 282
BsmFI	GGGAC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	1 cut(s)	380
Bso31I	GGTCTC	1 cut(s)	282
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	7 cut(s)	342, 414, 443, 551, 554, 557, 560
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	2 cut(s)	129, 241
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	1 cut(s)	16
BspMI	ACCTGC	1 cut(s)	244
BspOI	GCTAGC	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	282
BsrI	ACTGG	3 cut(s)	56, 211, 357
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	3 cut(s)	49, 173, 367
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	295, 470
BstDEI	CTNAG	2 cut(s)	137, 249
BstFNI	CGCG	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	543
BstMAI	GTCTC	2 cut(s)	197, 282
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	375
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	4 cut(s)	277, 560, 575, 584
BsuRI	GGCC	1 cut(s)	380
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	3 cut(s)	63, 115, 350
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	295, 470
CfoI	GCGC	1 cut(s)	543
CspCI	CAANNNNNGTGG	2 cut(s)	80, 115
CviAII	CATG	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	137, 249
Eco147I	AGGCCT	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	375
FaeI	CATG	1 cut(s)	301
FaiI	YATR	4 cut(s)	169, 299, 463, 598
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 167, 199
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	297
FspBI	CTAG	3 cut(s)	273, 282, 294
GlaI	GCGC	1 cut(s)	542
GsaI	CCCAGC	2 cut(s)	22, 487
GsuI	CTGGAG	2 cut(s)	246, 374
HaeIII	GGCC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	543
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	1 cut(s)	541
HinP1I	GCGC	1 cut(s)	541
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HpaI	GTTAAC	1 cut(s)	258
HphI	GGTGA	2 cut(s)	225, 373
Hpy166II	GTNNAC	2 cut(s)	52, 258
Hpy188III	TCNNGA	3 cut(s)	263, 306, 590
Hpy8I	GTNNAC	2 cut(s)	52, 258
HpyAV	CCTTC	3 cut(s)	152, 352, 493
HpyCH4III	ACNGT	3 cut(s)	49, 173, 367
HpyCH4V	TGCA	6 cut(s)	30, 111, 120, 239, 468, 530
HpyF3I	CTNAG	2 cut(s)	137, 249
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	1 cut(s)	541
KspAI	GTTAAC	1 cut(s)	258
LmnI	GCTCC	2 cut(s)	64, 504
Lsp1109I	GCAGC	4 cut(s)	277, 560, 575, 584
LweI	GCATC	1 cut(s)	539
MaeI	CTAG	3 cut(s)	273, 282, 294
MaeIII	GTNAC	2 cut(s)	231, 361
MluCI	AATT	3 cut(s)	142, 211, 534
MnlI	CCTC	6 cut(s)	55, 160, 189, 442, 445, 592
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	3 cut(s)	257, 522, 537
MspA1I	CMGCKG	2 cut(s)	248, 551
MspR9I	CCNGG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	377
MvnI	CGCG	1 cut(s)	443
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	231, 361
NspI	RCATGY	1 cut(s)	301
PaqCI	CACCTGC	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	380
PctI	GAATGC	1 cut(s)	456
PdmI	GAANNNNTTC	1 cut(s)	162
PflFI	GACNNNGTC	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	375
PspFI	CCCAGC	2 cut(s)	18, 483
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	16
PsyI	GACNNNGTC	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	248
SaqAI	TTAA	3 cut(s)	257, 522, 537
ScrFI	CCNGG	1 cut(s)	377
SfaNI	GCATC	1 cut(s)	539
Sse9I	AATT	3 cut(s)	142, 211, 534
SseBI	AGGCCT	1 cut(s)	380
SsiI	CCGC	7 cut(s)	342, 414, 443, 551, 554, 557, 560
SspMI	CTAG	3 cut(s)	273, 282, 294
StuI	AGGCCT	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	375
TaaI	ACNGT	3 cut(s)	49, 173, 367
TasI	AATT	3 cut(s)	142, 211, 534
TauI	GCSGC	6 cut(s)	417, 446, 554, 557, 560, 563
Tru1I	TTAA	3 cut(s)	257, 522, 537
Tru9I	TTAA	3 cut(s)	257, 522, 537
TscAI	CASTG	3 cut(s)	63, 122, 357
TseFI	GTSAC	2 cut(s)	231, 361
TseI	GCWGC	4 cut(s)	290, 548, 563, 572
Tsp45I	GTSAC	2 cut(s)	231, 361
TspRI	CASTG	3 cut(s)	63, 122, 357
Tth111I	GACNNNGTC	1 cut(s)	274
XceI	RCATGY	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	3 cut(s)	273, 282, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.