Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001824

Physical Location & Seq

Genomic Coordinates Reverse (-)

19290993 .. 19293063

Gene Structure 2071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1078000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCGTTCAGCGGAACCCAACAGAAATGCAAGGCTTGCGATAAGACCGTTCATTTCATTGACCAGTTATCTGCTGATGGTATTGCCTACCATAAGACCTGCTTCAAATGCAGTCATTGCAATGGACAACTTTCGATGAGTAGTTATTCATCCATGGATGGAGTTTTATACTGCAAGCCTCATTTTGAGCAACTCTTCAAGGAGACTGGAAGCTTTTCTAAGAAATTTCAGACGTCTGGAAAGTCACAAAATGAACTGACTAGGACCCCTAGCAAATTGTCCTCCATGTTCTCTGGGACCGTAGACAAATGTGCTGTATGCACCAAAACTGTGTATCCACTAGAGAAGGTTACCATGGAGGGAGATTTTTACCACAAATCATGCTTTAGGTGTAACCATGGGGGTTGCTTCCTCTCACCATCAAACTGTGCTGCTCTGGATGGAATTCTATACTGCAAGCACCACTTTGCCCAACTGTTCAAGGAGAAGGGCAGCTATAGCCACCTTACCAAGACTGCTTCACTAAAGAAAAATGGAGCTACATTGCCGGAACCAAAGCCTGAGGAATCGCAACCAGAACCAGCGGAAGAAACAGAAGTAGCACAAGAGACGCAAGATTCAGCCCCACAAGAGCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

214

Amino Acids

23.6

Weight (kDa)

7.51

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 66	1.1e-11	LIM domain
LIM	PF00412	104 - 160	6.5e-10	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39900 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770
fragaria_vesca	FvH4_5g01960 FvH4_5g01960 FvH4_7g23860 FvH4_7g23860
malus_domestica	MD01G1145700.v1.1 MD06G1078000.v1.1 MD07G1212800.v1.1 MD14G1098800.v1.1
prunus_persica	Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.5G095800_v2.0.a1 Prupe.5G095800_v2.0.a1
pyrus_communis	pycom01g16520 pycom07g19560 pycom14g09680
rosa_chinensis	RchiOBHm_Chr1g0369211 RchiOBHm_Chr7g0198411
rosa_laevigata	RLG00000003869 RLG00000027145
rosa_multiflora	Rmu_sc0001250.1_g000011 Rmu_sc0005807.1_g000002 Rmu_sc0030914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257710 Rroxscaffold_4G00287850
rosa_rugosa	Rorug01G0349100 Rorug07G0047800
rosa_samantha	Rh1AG356000 Rh1BG319600 Rh1CG333600 Rh1DG350300 Rh7AG171600 Rh7BG174400 Rh7CG180000 Rh7DG173500
rosa_wichuraiana	Rw1G031420 Rw7G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	2 cut(s)	12, 584
AcsI	RAATTY	2 cut(s)	224, 444
AcyI	GRCGYC	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	106, 199, 481
AluBI	AGCT	3 cut(s)	213, 495, 539
AluI	AGCT	3 cut(s)	213, 495, 539
Alw26I	GTCTC	2 cut(s)	197, 602
ApeKI	GCWGC	2 cut(s)	431, 492
ApoI	RAATTY	2 cut(s)	224, 444
Asp700I	GAANNNNTTC	1 cut(s)	214
AspS9I	GGNCC	2 cut(s)	264, 297
AsuHPI	GGTGA	1 cut(s)	408
AvaII	GGWCC	2 cut(s)	264, 297
AxyI	CCTNAGG	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	418, 504
BccI	CCATC	4 cut(s)	71, 152, 427, 434
BciVI	GTATCC	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	197, 602
BfaI	CTAG	3 cut(s)	261, 270, 341
BfmI	CTRYAG	1 cut(s)	496
BfuAI	ACCTGC	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	345
BisI	GCNGC	2 cut(s)	432, 493
BlsI	GCNGC	2 cut(s)	433, 494
Bme18I	GGWCC	2 cut(s)	264, 297
BmgT120I	GGNCC	2 cut(s)	264, 297
BmiI	GGNNCC	4 cut(s)	16, 266, 298, 552
BsaHI	GRCGYC	1 cut(s)	233
BsaJI	CCNNGG	3 cut(s)	153, 354, 397
Bse1I	ACTGG	2 cut(s)	64, 211
Bse21I	CCTNAGG	1 cut(s)	561
Bse3DI	GCAATG	3 cut(s)	115, 127, 542
BseDI	CCNNGG	3 cut(s)	153, 354, 397
BseGI	GGATG	3 cut(s)	149, 163, 445
BseMI	GCAATG	3 cut(s)	115, 127, 542
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	2 cut(s)	64, 211
BseXI	GCAGC	2 cut(s)	418, 504
BsiSI	CCGG	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	310
BsmAI	GTCTC	2 cut(s)	197, 602
BsmBI	CGTCTC	1 cut(s)	602
BsmFI	GGGAC	1 cut(s)	310
Bsp19I	CCATGG	3 cut(s)	153, 354, 397
BspACI	CCGC	2 cut(s)	12, 584
BspCNI	CTCAG	1 cut(s)	553
BspHI	TCATGA	1 cut(s)	638
BspLI	GGNNCC	4 cut(s)	16, 266, 298, 552
BspMI	ACCTGC	1 cut(s)	107
BsrDI	GCAATG	3 cut(s)	115, 127, 542
BsrI	ACTGG	2 cut(s)	64, 211
BssECI	CCNNGG	3 cut(s)	153, 354, 397
BssNI	GRCGYC	1 cut(s)	233
BssT1I	CCWWGG	3 cut(s)	153, 354, 397
Bst4CI	ACNGT	5 cut(s)	49, 301, 331, 428, 477
Bst6I	CTCTTC	1 cut(s)	200
BstACI	GRCGYC	1 cut(s)	233
BstAPI	GCANNNNNTGC	2 cut(s)	36, 117
BstC8I	GCNNGC	3 cut(s)	37, 176, 458
BstDEI	CTNAG	2 cut(s)	219, 561
BstDSI	CCRYGG	3 cut(s)	153, 354, 397
BstEII	GGTNACC	1 cut(s)	349
BstF5I	GGATG	3 cut(s)	149, 163, 445
BstMAI	GTCTC	2 cut(s)	197, 602
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 108, 117, 498
BstPI	GGTNACC	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	496
BstV1I	GCAGC	2 cut(s)	418, 504
Bsu36I	CCTNAGG	1 cut(s)	561
BsuI	GTATCC	1 cut(s)	345
BtgI	CCRYGG	3 cut(s)	153, 354, 397
BtsCI	GGATG	3 cut(s)	149, 163, 445
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	3 cut(s)	37, 176, 458
CciI	TCATGA	1 cut(s)	638
Cfr13I	GGNCC	2 cut(s)	264, 297
CseI	GACGC	1 cut(s)	619
CviAII	CATG	6 cut(s)	154, 286, 355, 381, 398, 639
CviJI	RGCY	8 cut(s)	35, 178, 213, 495, 501, 539, 559, 623
CviKI_1	RGCY	8 cut(s)	35, 178, 213, 495, 501, 539, 559, 623
DdeI	CTNAG	2 cut(s)	219, 561
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco130I	CCWWGG	3 cut(s)	153, 354, 397
Eco47I	GGWCC	2 cut(s)	264, 297
Eco81I	CCTNAGG	1 cut(s)	561
Eco91I	GGTNACC	1 cut(s)	349
EcoO109I	RGGNCCY	1 cut(s)	264
EcoO65I	GGTNACC	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	444
EcoT14I	CCWWGG	3 cut(s)	153, 354, 397
ErhI	CCWWGG	3 cut(s)	153, 354, 397
Esp3I	CGTCTC	1 cut(s)	602
FaeI	CATG	6 cut(s)	157, 289, 358, 384, 401, 642
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 449, 481
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	6 cut(s)	153, 285, 354, 380, 397, 638
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	432, 493
FokI	GGATG	3 cut(s)	136, 170, 452
Fsp4HI	GCNGC	2 cut(s)	432, 493
FspBI	CTAG	3 cut(s)	261, 270, 341
GluI	GCNGC	2 cut(s)	432, 493
HapII	CCGG	1 cut(s)	548
HgaI	GACGC	1 cut(s)	619
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	6 cut(s)	157, 289, 358, 384, 401, 642
HindIII	AAGCTT	1 cut(s)	211
HinfI	GANTC	2 cut(s)	566, 617
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	1 cut(s)	408
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	3 cut(s)	237, 437, 639
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	340, 481
HpyCH4III	ACNGT	5 cut(s)	49, 301, 331, 428, 477
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	6 cut(s)	30, 111, 120, 174, 321, 456
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 108, 117, 498
HpyF3I	CTNAG	2 cut(s)	219, 561
HpySE526I	ACGT	1 cut(s)	233
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	6 cut(s)	157, 289, 358, 384, 401, 642
LmnI	GCTCC	1 cut(s)	536
Lsp1109I	GCAGC	2 cut(s)	418, 504
MaeI	CTAG	3 cut(s)	261, 270, 341
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	3 cut(s)	243, 349, 392
MboII	GAAGA	2 cut(s)	187, 599
MluCI	AATT	3 cut(s)	224, 275, 444
MnlI	CCTC	5 cut(s)	189, 292, 352, 422, 556
MroXI	GAANNNNTTC	1 cut(s)	214
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	2 cut(s)	12, 584
MspI	CCGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	4 cut(s)	36, 108, 117, 498
NcoI	CCATGG	3 cut(s)	153, 354, 397
NlaIII	CATG	6 cut(s)	157, 289, 358, 384, 401, 642
NlaIV	GGNNCC	4 cut(s)	16, 266, 298, 552
NmuCI	GTSAC	1 cut(s)	243
PagI	TCATGA	1 cut(s)	638
PdmI	GAANNNNTTC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	566, 617
PkrI	GCNGC	2 cut(s)	433, 494
PpuMI	RGGWCCY	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	349
PspN4I	GGNNCC	4 cut(s)	16, 266, 298, 552
PspPI	GGNCC	2 cut(s)	264, 297
PspPPI	RGGWCCY	1 cut(s)	264
RseI	CAYNNNNRTG	1 cut(s)	120
SatI	GCNGC	2 cut(s)	432, 493
Sau96I	GGNCC	2 cut(s)	264, 297
SetI	ASST	8 cut(s)	101, 215, 236, 351, 392, 497, 507, 541
SfcI	CTRYAG	1 cut(s)	496
SinI	GGWCC	2 cut(s)	264, 297
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	3 cut(s)	224, 275, 444
SsiI	CCGC	2 cut(s)	12, 584
SspMI	CTAG	3 cut(s)	261, 270, 341
StyI	CCWWGG	3 cut(s)	153, 354, 397
TaaI	ACNGT	5 cut(s)	49, 301, 331, 428, 477
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	134
TasI	AATT	3 cut(s)	224, 275, 444
TfiI	GAWTC	2 cut(s)	566, 617
TseFI	GTSAC	1 cut(s)	243
TseI	GCWGC	2 cut(s)	431, 492
Tsp45I	GTSAC	1 cut(s)	243
TspDTI	ATGAA	4 cut(s)	41, 46, 138, 267
VpaK11BI	GGWCC	2 cut(s)	264, 297
XapI	RAATTY	2 cut(s)	224, 444
XmiI	GTMKAC	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	214
XspI	CTAG	3 cut(s)	261, 270, 341
ZraI	GACGTC	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.