Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001824

Physical Location & Seq

Genomic Coordinates Reverse (-)

16071151 .. 16072793

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCTTTCATTGGCACCCAGCAGAAATGCAAGGCTTGTGAAAAGACAGTTTACCCAGTGGAGGAGCTATCTGCTGATGGGATTTCCTACCACAAGTCTTGCTTCAAATGCACCCACTGCAAAGGGACTTTGAAGCTGAGCAATTATTCCTCAATGGAAGGTGTTCTGTACTGTAAGCCTCACTTTGAGCAACTTTTCAAGGAGACTGGCAATTTCAACAAGAACTTTCAGTCACCTGCAAAGTCAGCTGAGAAGTTAACTCCAGAGCTGGTAAACTTCTCTACATCGCTGTCACCTAGCAAAGCTGCTAGCATGTTTTCTGGAACACAAGACAAATGTGCTACTTGTGGTAAAACCGCTTATCCACTGGAGAAGGTGACTGTGGAGAGCCAGGCCTATCACAAGTCGTGTTTCAAGTGTTCTCACGGTGGCTGTCCTATTACTCCCTCAAACTACGCGGCTTTGGAGGGCATTCTATACTGCAAGCACCATTTCTCCCAGCTTTTCAAGGAGAAGGGGAGCTACAACCATCTTATTAAGTCTGCATCAATTAAGCGCACAGCAGCAGCAGCGGCGGCAGCAACAGCAGCAGTAGCCTCCATTCCAGAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

205

Amino Acids

22.14

Weight (kDa)

8.93

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39900 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770
fragaria_vesca	FvH4_5g01960 FvH4_5g01960 FvH4_7g23860 FvH4_7g23860
malus_domestica	MD01G1145700.v1.1 MD06G1078000.v1.1 MD07G1212800.v1.1 MD14G1098800.v1.1
prunus_persica	Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.5G095800_v2.0.a1 Prupe.5G095800_v2.0.a1
pyrus_communis	pycom01g16520 pycom07g19560 pycom14g09680
rosa_chinensis	RchiOBHm_Chr1g0369211 RchiOBHm_Chr7g0198411
rosa_laevigata	RLG00000003869 RLG00000027145
rosa_multiflora	Rmu_sc0001250.1_g000011 Rmu_sc0005807.1_g000002 Rmu_sc0030914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257710 Rroxscaffold_4G00287850
rosa_rugosa	Rorug01G0349100 Rorug07G0047800
rosa_samantha	Rh1AG356000 Rh1BG319600 Rh1CG333600 Rh1DG350300 Rh7AG171600 Rh7BG174400 Rh7CG180000 Rh7DG173500
rosa_wichuraiana	Rw1G031420 Rw7G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	14
AccII	CGCG	1 cut(s)	458
AciI	CCGC	4 cut(s)	357, 458, 572, 575
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	6 cut(s)	106, 133, 199, 217, 415, 508
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	7 cut(s)	67, 136, 248, 268, 305, 502, 522
AluI	AGCT	7 cut(s)	67, 136, 248, 268, 305, 502, 522
Alw26I	GTCTC	1 cut(s)	197
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	6 cut(s)	305, 563, 566, 569, 578, 587
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	558
AsuHPI	GGTGA	3 cut(s)	225, 285, 388
AsuNHI	GCTAGC	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	14
BarI	GAAGNNNNNNTAC	2 cut(s)	506, 538
BbvI	GCAGC	6 cut(s)	292, 575, 578, 581, 590, 599
BccI	CCATC	2 cut(s)	71, 537
BciT130I	CCWGG	1 cut(s)	392
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	2 cut(s)	297, 309
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	9 cut(s)	306, 459, 564, 567, 570, 573, 576, 579, 588
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	9 cut(s)	307, 460, 565, 568, 571, 574, 577, 580, 589
Bme1390I	CCNGG	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	392
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	554
BmtI	GCTAGC	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	50
BpmI	CTGGAG	2 cut(s)	246, 389
Bpu1102I	GCTNAGC	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	3 cut(s)	56, 211, 372
BseBI	CCWGG	1 cut(s)	392
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	128, 240
BseNI	ACTGG	3 cut(s)	56, 211, 372
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	6 cut(s)	292, 575, 578, 581, 590, 599
BseYI	CCCAGC	2 cut(s)	18, 498
Bsh1236I	CGCG	1 cut(s)	458
BshFI	GGCC	1 cut(s)	395
BshNI	GGYRCC	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	395
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	4 cut(s)	357, 458, 572, 575
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	2 cut(s)	129, 241
BspFNI	CGCG	1 cut(s)	458
BspLI	GGNNCC	1 cut(s)	16
BspMI	ACCTGC	1 cut(s)	244
BspOI	GCTAGC	1 cut(s)	312
BspT107I	GGYRCC	1 cut(s)	14
BsrI	ACTGG	3 cut(s)	56, 211, 372
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	4 cut(s)	49, 173, 382, 428
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	310, 485
BstDEI	CTNAG	2 cut(s)	137, 249
BstFNI	CGCG	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	558
BstMAI	GTCTC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	390
BstUI	CGCG	1 cut(s)	458
BstV1I	GCAGC	6 cut(s)	292, 575, 578, 581, 590, 599
BsuRI	GGCC	1 cut(s)	395
BtgZI	GCGATG	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	3 cut(s)	63, 115, 365
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	310, 485
CfoI	GCGC	1 cut(s)	558
Csp6I	GTAC	1 cut(s)	169
CspCI	CAANNNNNGTGG	2 cut(s)	80, 115
CviAII	CATG	1 cut(s)	313
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	2 cut(s)	137, 249
Eco147I	AGGCCT	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	390
FaeI	CATG	1 cut(s)	316
FaiI	YATR	3 cut(s)	314, 478, 613
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 167, 199
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	312
Fnu4HI	GCNGC	9 cut(s)	306, 459, 564, 567, 570, 573, 576, 579, 588
Fsp4HI	GCNGC	9 cut(s)	306, 459, 564, 567, 570, 573, 576, 579, 588
FspBI	CTAG	2 cut(s)	297, 309
GlaI	GCGC	1 cut(s)	557
GluI	GCNGC	9 cut(s)	306, 459, 564, 567, 570, 573, 576, 579, 588
GsaI	CCCAGC	2 cut(s)	22, 502
GsuI	CTGGAG	2 cut(s)	246, 389
HaeIII	GGCC	1 cut(s)	395
HhaI	GCGC	1 cut(s)	558
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	1 cut(s)	556
HinP1I	GCGC	1 cut(s)	556
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HpaI	GTTAAC	1 cut(s)	258
HphI	GGTGA	3 cut(s)	225, 285, 388
Hpy166II	GTNNAC	3 cut(s)	52, 258, 274
Hpy188III	TCNNGA	3 cut(s)	263, 321, 605
Hpy8I	GTNNAC	3 cut(s)	52, 258, 274
HpyAV	CCTTC	3 cut(s)	152, 367, 508
HpyCH4III	ACNGT	4 cut(s)	49, 173, 382, 428
HpyCH4V	TGCA	6 cut(s)	30, 111, 120, 239, 483, 545
HpyF3I	CTNAG	2 cut(s)	137, 249
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	1 cut(s)	556
KspAI	GTTAAC	1 cut(s)	258
LmnI	GCTCC	2 cut(s)	64, 519
Lsp1109I	GCAGC	6 cut(s)	292, 575, 578, 581, 590, 599
LweI	GCATC	1 cut(s)	554
MaeI	CTAG	2 cut(s)	297, 309
MaeIII	GTNAC	3 cut(s)	231, 291, 376
MluCI	AATT	3 cut(s)	142, 211, 549
MnlI	CCTC	6 cut(s)	55, 160, 189, 457, 460, 607
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	3 cut(s)	257, 537, 552
MspA1I	CMGCKG	2 cut(s)	248, 572
MspR9I	CCNGG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	1 cut(s)	458
NheI	GCTAGC	1 cut(s)	308
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	3 cut(s)	231, 291, 376
NspI	RCATGY	1 cut(s)	316
PaqCI	CACCTGC	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	395
PctI	GAATGC	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	162
PkrI	GCNGC	9 cut(s)	307, 460, 565, 568, 571, 574, 577, 580, 589
Psp6I	CCWGG	1 cut(s)	390
PspFI	CCCAGC	2 cut(s)	18, 498
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	257, 537, 552
SatI	GCNGC	9 cut(s)	306, 459, 564, 567, 570, 573, 576, 579, 588
ScrFI	CCNGG	1 cut(s)	392
SfaNI	GCATC	1 cut(s)	554
Sse9I	AATT	3 cut(s)	142, 211, 549
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	4 cut(s)	357, 458, 572, 575
SspMI	CTAG	2 cut(s)	297, 309
StuI	AGGCCT	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	390
TaaI	ACNGT	4 cut(s)	49, 173, 382, 428
TasI	AATT	3 cut(s)	142, 211, 549
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	3 cut(s)	461, 575, 578
Tru1I	TTAA	3 cut(s)	257, 537, 552
Tru9I	TTAA	3 cut(s)	257, 537, 552
TscAI	CASTG	3 cut(s)	63, 122, 372
TseFI	GTSAC	3 cut(s)	231, 291, 376
TseI	GCWGC	6 cut(s)	305, 563, 566, 569, 578, 587
Tsp45I	GTSAC	3 cut(s)	231, 291, 376
TspRI	CASTG	3 cut(s)	63, 122, 372
XceI	RCATGY	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	2 cut(s)	297, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.