Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001824

Physical Location & Seq

Genomic Coordinates Reverse (-)

15093067 .. 15094881

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1098800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCGTTCAGCGGGACCCAACAGAAATGCAAGGCTTGTGATAAGACTGTTCATTTCATTGACCAGTTATCTGCTGATGGTATTGCCTACCATAAGACCTGCTTCAAATGTAGTCACTGCAATGGACAACTTTCGATGAGTAGCTACTCATCCATGGATGAAGTCCTATATTGCAAGCCTCATTTCGAGCAACTCTTCAAGGAGACTGGCAGCTTTTCTAAGAAATTTCAGACATCTGGAAAGTCACAAACTGAATTGACTAGGACCCCTAGCAAACTGTCCTCTATGTTCTCTGGGACCGTAGACAAATGTGCTGTATGCACCAAAACTGTGTATCCACTAGAGAAGGTTACCATGGAGGGAGCGTTCTACCACAAGTCATGCTTTAGGTGTAACCATGGTGGTTGCTTCCTCTCACCATCAAACTGTGCTGCTTTGGATGGCATTCTTTACTGCAAACACCACTTTGCCCAATTGTTCAAGGAGAAGGGTAGCTACAACCACCTCACCAAGACTGCTTCACTAAAGAAAAAAGGAGCTCCAATGTCAGAACTGAAACCTAATGAATCGCAAGCAAAACAGGCAGAAGTAACAGAAGAAGCAAAACCAGAATCAAAAGCAGAAGCAGCCCAAGAGACACAAGATTCAGCCCCACAAGAGCAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

223

Amino Acids

24.6

Weight (kDa)

8.49

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 66	3.5e-11	LIM domain
LIM	PF00412	104 - 160	7.8e-10	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39900 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770
fragaria_vesca	FvH4_5g01960 FvH4_5g01960 FvH4_7g23860 FvH4_7g23860
malus_domestica	MD01G1145700.v1.1 MD06G1078000.v1.1 MD07G1212800.v1.1 MD14G1098800.v1.1
prunus_persica	Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.5G095800_v2.0.a1 Prupe.5G095800_v2.0.a1
pyrus_communis	pycom01g16520 pycom07g19560 pycom14g09680
rosa_chinensis	RchiOBHm_Chr1g0369211 RchiOBHm_Chr7g0198411
rosa_laevigata	RLG00000003869 RLG00000027145
rosa_multiflora	Rmu_sc0001250.1_g000011 Rmu_sc0005807.1_g000002 Rmu_sc0030914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257710 Rroxscaffold_4G00287850
rosa_rugosa	Rorug01G0349100 Rorug07G0047800
rosa_samantha	Rh1AG356000 Rh1BG319600 Rh1CG333600 Rh1DG350300 Rh7AG171600 Rh7BG174400 Rh7CG180000 Rh7DG173500
rosa_wichuraiana	Rw1G031420 Rw7G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	224
AgsI	TTSAA	3 cut(s)	106, 199, 481
AloI	GAACNNNNNNTCC	2 cut(s)	350, 382
AluBI	AGCT	4 cut(s)	144, 213, 495, 539
AluI	AGCT	4 cut(s)	144, 213, 495, 539
Alw21I	GWGCWC	1 cut(s)	541
Alw26I	GTCTC	2 cut(s)	197, 629
ApeKI	GCWGC	3 cut(s)	210, 431, 626
ApoI	RAATTY	1 cut(s)	224
AspS9I	GGNCC	3 cut(s)	15, 264, 297
AsuHPI	GGTGA	2 cut(s)	408, 499
AvaII	GGWCC	3 cut(s)	15, 264, 297
BanII	GRGCYC	1 cut(s)	541
BarI	GAAGNNNNNNTAC	2 cut(s)	479, 511
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	3 cut(s)	222, 418, 638
BccI	CCATC	3 cut(s)	71, 427, 434
BciVI	GTATCC	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	197, 629
BfaI	CTAG	3 cut(s)	261, 270, 341
BfuAI	ACCTGC	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	345
BisI	GCNGC	3 cut(s)	211, 432, 627
BlsI	GCNGC	3 cut(s)	212, 433, 628
Bme18I	GGWCC	3 cut(s)	15, 264, 297
BmgT120I	GGNCC	3 cut(s)	15, 264, 297
BmiI	GGNNCC	4 cut(s)	16, 17, 266, 298
BsaJI	CCNNGG	3 cut(s)	153, 354, 397
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bse1I	ACTGG	2 cut(s)	64, 211
Bse3DI	GCAATG	1 cut(s)	127
BseDI	CCNNGG	3 cut(s)	153, 354, 397
BseGI	GGATG	3 cut(s)	149, 163, 445
BseMI	GCAATG	1 cut(s)	127
BseNI	ACTGG	2 cut(s)	64, 211
BseXI	GCAGC	3 cut(s)	222, 418, 638
BsiHKAI	GWGCWC	1 cut(s)	541
BslFI	GGGAC	2 cut(s)	28, 310
BsmAI	GTCTC	2 cut(s)	197, 629
BsmFI	GGGAC	2 cut(s)	28, 310
BsmI	GAATGC	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp19I	CCATGG	3 cut(s)	153, 354, 397
BspACI	CCGC	1 cut(s)	12
BspLI	GGNNCC	4 cut(s)	16, 17, 266, 298
BspMI	ACCTGC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	64, 211
BssECI	CCNNGG	3 cut(s)	153, 354, 397
BssT1I	CCWWGG	3 cut(s)	153, 354, 397
Bst4CI	ACNGT	5 cut(s)	49, 279, 301, 331, 428
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	176, 573
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	3 cut(s)	153, 354, 397
BstEII	GGTNACC	1 cut(s)	349
BstF5I	GGATG	3 cut(s)	149, 163, 445
BstMAI	GTCTC	2 cut(s)	197, 629
BstMWI	GCNNNNNNNGC	2 cut(s)	581, 626
BstPI	GGTNACC	1 cut(s)	349
BstV1I	GCAGC	3 cut(s)	222, 418, 638
BsuI	GTATCC	1 cut(s)	345
BtgI	CCRYGG	3 cut(s)	153, 354, 397
BtsCI	GGATG	3 cut(s)	149, 163, 445
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	115
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	2 cut(s)	176, 573
Cfr13I	GGNCC	3 cut(s)	15, 264, 297
CviAII	CATG	4 cut(s)	154, 355, 381, 398
CviJI	RGCY	8 cut(s)	35, 144, 178, 213, 495, 539, 629, 650
CviKI_1	RGCY	8 cut(s)	35, 144, 178, 213, 495, 539, 629, 650
DdeI	CTNAG	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Ecl136II	GAGCTC	1 cut(s)	539
Eco130I	CCWWGG	3 cut(s)	153, 354, 397
Eco24I	GRGCYC	1 cut(s)	541
Eco47I	GGWCC	3 cut(s)	15, 264, 297
Eco53kI	GAGCTC	1 cut(s)	539
Eco91I	GGTNACC	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	539
EcoO109I	RGGNCCY	2 cut(s)	15, 264
EcoO65I	GGTNACC	1 cut(s)	349
EcoT14I	CCWWGG	3 cut(s)	153, 354, 397
EcoT38I	GRGCYC	1 cut(s)	541
ErhI	CCWWGG	3 cut(s)	153, 354, 397
FaeI	CATG	4 cut(s)	157, 358, 384, 401
FaiI	YATR	9 cut(s)	93, 155, 169, 287, 319, 356, 382, 399, 667
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 368, 400
FaqI	GGGAC	2 cut(s)	28, 310
FatI	CATG	4 cut(s)	153, 354, 380, 397
FauI	CCCGC	1 cut(s)	5
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	3 cut(s)	211, 432, 627
FokI	GGATG	3 cut(s)	136, 170, 452
FriOI	GRGCYC	1 cut(s)	541
Fsp4HI	GCNGC	3 cut(s)	211, 432, 627
FspBI	CTAG	3 cut(s)	261, 270, 341
GluI	GCNGC	3 cut(s)	211, 432, 627
Hin1II	CATG	4 cut(s)	157, 358, 384, 401
HinfI	GANTC	3 cut(s)	566, 611, 644
HphI	GGTGA	2 cut(s)	408, 499
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	231, 550
Hpy188III	TCNNGA	1 cut(s)	237
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	340, 481
HpyCH4III	ACNGT	5 cut(s)	49, 279, 301, 331, 428
HpyCH4V	TGCA	5 cut(s)	30, 120, 174, 321, 456
HpyF10VI	GCNNNNNNNGC	2 cut(s)	581, 626
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	4 cut(s)	157, 358, 384, 401
KflI	GGGWCCC	1 cut(s)	15
LmnI	GCTCC	3 cut(s)	362, 536, 544
LpnPI	CCDG	7 cut(s)	77, 112, 192, 222, 279, 566, 621
Lsp1109I	GCAGC	3 cut(s)	222, 418, 638
MaeI	CTAG	3 cut(s)	261, 270, 341
MaeIII	GTNAC	5 cut(s)	113, 243, 349, 392, 589
MboII	GAAGA	2 cut(s)	187, 608
MfeI	CAATTG	1 cut(s)	473
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	4 cut(s)	224, 254, 473, 662
MnlI	CCTC	5 cut(s)	189, 292, 352, 422, 515
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	473
Mva1269I	GAATGC	1 cut(s)	444
MwoI	GCNNNNNNNGC	2 cut(s)	581, 626
NcoI	CCATGG	3 cut(s)	153, 354, 397
NlaIII	CATG	4 cut(s)	157, 358, 384, 401
NlaIV	GGNNCC	4 cut(s)	16, 17, 266, 298
NmuCI	GTSAC	2 cut(s)	113, 243
PctI	GAATGC	1 cut(s)	444
PfeI	GAWTC	3 cut(s)	566, 611, 644
PkrI	GCNGC	3 cut(s)	212, 433, 628
PpuMI	RGGWCCY	2 cut(s)	15, 264
Psp124BI	GAGCTC	1 cut(s)	541
Psp5II	RGGWCCY	2 cut(s)	15, 264
PspEI	GGTNACC	1 cut(s)	349
PspN4I	GGNNCC	4 cut(s)	16, 17, 266, 298
PspPI	GGNCC	3 cut(s)	15, 264, 297
PspPPI	RGGWCCY	2 cut(s)	15, 264
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	541
SatI	GCNGC	3 cut(s)	211, 432, 627
Sau96I	GGNCC	3 cut(s)	15, 264, 297
SduI	GDGCHC	1 cut(s)	541
SetI	ASST	9 cut(s)	101, 146, 215, 351, 392, 497, 507, 541, 562
SinI	GGWCC	3 cut(s)	15, 264, 297
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	4 cut(s)	224, 254, 473, 662
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	3 cut(s)	261, 270, 341
SstI	GAGCTC	1 cut(s)	541
StyI	CCWWGG	3 cut(s)	153, 354, 397
TaaI	ACNGT	5 cut(s)	49, 279, 301, 331, 428
TaqI	TCGA	2 cut(s)	134, 186
TasI	AATT	4 cut(s)	224, 254, 473, 662
TfiI	GAWTC	3 cut(s)	566, 611, 644
TscAI	CASTG	1 cut(s)	122
TseFI	GTSAC	2 cut(s)	113, 243
TseI	GCWGC	3 cut(s)	210, 431, 626
Tsp45I	GTSAC	2 cut(s)	113, 243
TspDTI	ATGAA	4 cut(s)	41, 46, 174, 579
TspRI	CASTG	1 cut(s)	122
VpaK11BI	GGWCC	3 cut(s)	15, 264, 297
XapI	RAATTY	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	303
XspI	CTAG	3 cut(s)	261, 270, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.