Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001824

Physical Location & Seq

Genomic Coordinates Forward (+)

15845457 .. 15847784

Gene Structure 2328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG173500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAGCAGCTACTCCGCCATGGAGGGAGTTCTATACTGCAAGCCTCATTTCGAGCAACTCTACAAGGATAGCGCTAGTAAGAAAATTCCGAGTGGGAAACCAAACGAAGTGCTGACTAAGACCCCTAGCAAATTGTCCTTTATGTTCTCTGGGACTCAAGACAAATGTGCCGTCTGCACCAAAACTGTTTATCCATTAGAGAAGGTTACGTTGGAAGGAACGTTTTACCACAAGAACTGCTTTAGGTGTAATCATGGGGGTTGCGCTCTCTCACCCTCAAACTGTGCTGCTCTAGATGGCATTCTATACTGCAAGCACCACTTTTCCCAGTTGTTCAAGGAGAAGGGCAGCTACAACCACCTCACCAAGACTGCTTCTCTGAGGAAAAATGTAGCTCCATTACCCGAGCCAAAAACCGAGGCTGCTGAGGGAGAAGAACCAAAGGCAGACGCAGGAGTGGAAGCAGGTGAAGCAGAGGCCGCAGCACAGGAGTCACAAGATGCAGCCCAGACGCAAGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

174

Amino Acids

18.96

Weight (kDa)

6.59

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	56 - 112	7.9e-10	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39900 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770
fragaria_vesca	FvH4_5g01960 FvH4_5g01960 FvH4_7g23860 FvH4_7g23860
malus_domestica	MD01G1145700.v1.1 MD06G1078000.v1.1 MD07G1212800.v1.1 MD14G1098800.v1.1
prunus_persica	Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.5G095800_v2.0.a1 Prupe.5G095800_v2.0.a1
pyrus_communis	pycom01g16520 pycom07g19560 pycom14g09680
rosa_chinensis	RchiOBHm_Chr1g0369211 RchiOBHm_Chr7g0198411
rosa_laevigata	RLG00000003869 RLG00000027145
rosa_multiflora	Rmu_sc0001250.1_g000011 Rmu_sc0005807.1_g000002 Rmu_sc0030914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257710 Rroxscaffold_4G00287850
rosa_rugosa	Rorug01G0349100 Rorug07G0047800
rosa_samantha	Rh1AG356000 Rh1BG319600 Rh1CG333600 Rh1DG350300 Rh7AG171600 Rh7BG174400 Rh7CG180000 Rh7DG173500
rosa_wichuraiana	Rw1G031420 Rw7G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	455
AciI	CCGC	2 cut(s)	15, 480
AclI	AACGTT	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	84
AfeI	AGCGCT	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	3 cut(s)	9, 351, 395
AluI	AGCT	3 cut(s)	9, 351, 395
Ama87I	CYCGRG	1 cut(s)	404
Aor51HI	AGCGCT	1 cut(s)	73
AoxI	GGCC	1 cut(s)	477
ApeKI	GCWGC	6 cut(s)	6, 287, 348, 422, 482, 503
ApoI	RAATTY	1 cut(s)	84
ArsI	GACNNNNNNTTYG	2 cut(s)	156, 188
AspLEI	GCGC	2 cut(s)	74, 266
AsuHPI	GGTGA	3 cut(s)	264, 355, 479
AvaI	CYCGRG	1 cut(s)	404
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	6 cut(s)	18, 274, 360, 409, 494, 515
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	155
BfaI	CTAG	3 cut(s)	75, 126, 293
BfoI	RGCGCY	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	455
BisI	GCNGC	7 cut(s)	7, 288, 349, 423, 480, 483, 504
BlsI	GCNGC	7 cut(s)	8, 289, 350, 424, 481, 484, 505
BmeT110I	CYCGRG	1 cut(s)	404
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	1 cut(s)	490
BmuI	ACTGGG	1 cut(s)	322
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	18, 417
Bse1I	ACTGG	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	18, 417
BseMII	CTCAG	2 cut(s)	371, 417
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	6 cut(s)	18, 274, 360, 409, 494, 515
BsgI	GTGCAG	1 cut(s)	160
BshFI	GGCC	1 cut(s)	479
BsiHKCI	CYCGRG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	166
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	479
BsoBI	CYCGRG	1 cut(s)	404
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	2 cut(s)	15, 480
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	2 cut(s)	372, 418
BspMI	ACCTGC	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	18, 417
BssT1I	CCWWGG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	187, 284
BstC8I	GCNNGC	2 cut(s)	41, 314
BstDEI	CTNAG	3 cut(s)	117, 380, 426
BstDSI	CCRYGG	1 cut(s)	18
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 266
BstMWI	GCNNNNNNNGC	2 cut(s)	470, 479
BstV1I	GCAGC	6 cut(s)	18, 274, 360, 409, 494, 515
BsuRI	GGCC	1 cut(s)	479
BtgI	CCRYGG	1 cut(s)	18
BveI	ACCTGC	1 cut(s)	455
Cac8I	GCNNGC	2 cut(s)	41, 314
CfoI	GCGC	2 cut(s)	74, 266
CseI	GACGC	2 cut(s)	458, 520
CviAII	CATG	2 cut(s)	19, 254
CviJI	RGCY	8 cut(s)	9, 43, 351, 395, 409, 422, 479, 506
CviKI_1	RGCY	8 cut(s)	9, 43, 351, 395, 409, 422, 479, 506
DdeI	CTNAG	3 cut(s)	117, 380, 426
EciI	GGCGGA	1 cut(s)	4
Eco130I	CCWWGG	1 cut(s)	18
Eco47III	AGCGCT	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	2 cut(s)	22, 257
FaiI	YATR	5 cut(s)	20, 34, 143, 255, 307
FalI	AAGNNNNNCTT	4 cut(s)	224, 256, 305, 337
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	2 cut(s)	18, 253
Fnu4HI	GCNGC	7 cut(s)	7, 288, 349, 423, 480, 483, 504
Fsp4HI	GCNGC	7 cut(s)	7, 288, 349, 423, 480, 483, 504
FspBI	CTAG	3 cut(s)	75, 126, 293
GlaI	GCGC	2 cut(s)	73, 265
GluI	GCNGC	7 cut(s)	7, 288, 349, 423, 480, 483, 504
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	479
HgaI	GACGC	2 cut(s)	458, 520
HhaI	GCGC	2 cut(s)	74, 266
Hin1II	CATG	2 cut(s)	22, 257
Hin6I	GCGC	2 cut(s)	72, 264
HinP1I	GCGC	2 cut(s)	72, 264
HinfI	GANTC	2 cut(s)	154, 491
HphI	GGTGA	3 cut(s)	264, 355, 479
Hpy188I	TCNGA	2 cut(s)	90, 381
Hpy188III	TCNNGA	2 cut(s)	158, 293
HpyAV	CCTTC	3 cut(s)	196, 209, 337
HpyCH4III	ACNGT	2 cut(s)	187, 284
HpyCH4IV	ACGT	2 cut(s)	209, 221
HpyCH4V	TGCA	4 cut(s)	39, 177, 312, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	470, 479
HpyF3I	CTNAG	3 cut(s)	117, 380, 426
HpySE526I	ACGT	2 cut(s)	209, 221
Hsp92II	CATG	2 cut(s)	22, 257
HspAI	GCGC	2 cut(s)	72, 264
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	6 cut(s)	135, 341, 438, 450, 473, 521
Lsp1109I	GCAGC	6 cut(s)	18, 274, 360, 409, 494, 515
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	3 cut(s)	75, 126, 293
MaeII	ACGT	2 cut(s)	209, 221
MaeIII	GTNAC	2 cut(s)	205, 492
MboII	GAAGA	1 cut(s)	446
MluCI	AATT	2 cut(s)	84, 131
MlyI	GAGTC	2 cut(s)	148, 500
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	8 cut(s)	16, 54, 286, 371, 375, 412, 421, 469
Mva1269I	GAATGC	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	470, 479
NcoI	CCATGG	1 cut(s)	18
NlaIII	CATG	2 cut(s)	22, 257
NmuCI	GTSAC	1 cut(s)	492
PaqCI	CACCTGC	1 cut(s)	455
PctI	GAATGC	1 cut(s)	300
PkrI	GCNGC	7 cut(s)	8, 289, 350, 424, 481, 484, 505
PleI	GAGTC	2 cut(s)	148, 499
PpsI	GAGTC	2 cut(s)	148, 499
Psp1406I	AACGTT	1 cut(s)	221
SatI	GCNGC	7 cut(s)	7, 288, 349, 423, 480, 483, 504
SchI	GAGTC	2 cut(s)	148, 500
SetI	ASST	9 cut(s)	11, 207, 212, 224, 248, 353, 363, 397, 469
SfaNI	GCATC	1 cut(s)	490
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
Sse9I	AATT	2 cut(s)	84, 131
SsiI	CCGC	2 cut(s)	15, 480
SspMI	CTAG	3 cut(s)	75, 126, 293
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	187, 284
TaiI	ACGT	2 cut(s)	212, 224
TaqI	TCGA	1 cut(s)	51
TasI	AATT	2 cut(s)	84, 131
TauI	GCSGC	1 cut(s)	482
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	6 cut(s)	6, 287, 348, 422, 482, 503
Tsp45I	GTSAC	1 cut(s)	492
XapI	RAATTY	1 cut(s)	84
XbaI	TCTAGA	1 cut(s)	292
XspI	CTAG	3 cut(s)	75, 126, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.