Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001824

Physical Location & Seq

Genomic Coordinates Reverse (-)

59154401 .. 59156734

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG356000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTCTTTCATTGGCACCCAGCAGAAATGCAAGGCTTGTGCAAAGACGGTTTACCCAGTAGAGGAGCTATCTGCAGATGGGATTTCCTACCACAAGTCTTGCTTCAAGTGCACTCACTGCAAGGGGACTTTGAAGCTGAGCAATTATTCCTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAACTCTTCAAGGAGACCGGAAACTTCAACAAGAATTTCCAGTCACCTGCAAAGTCAGCTGAGAAGCTAACTCCAGAACTGACTAGGTCACCCAGCAAAGCTGCTGGTATGTTTTCTGGCACACAAGAAAAATGTGCTACTTGTGGTAAAACCGCTTATCCACTGGAGAAGGTACAATCCCATGATATTGGTTATGTTATCCTTTATTTTATCCATATTTTTCTACTGTTTTCCTGGATCAATATAGAATTAGATTGGCATTGCCCTTTCAGTTTGTTTTATATAAGTCGGGCACATCCGAAGATGTATGTACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

168

Amino Acids

19.09

Weight (kDa)

8.8

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 66	2.1e-12	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39900 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770 AT3G55770
fragaria_vesca	FvH4_5g01960 FvH4_5g01960 FvH4_7g23860 FvH4_7g23860
malus_domestica	MD01G1145700.v1.1 MD06G1078000.v1.1 MD07G1212800.v1.1 MD14G1098800.v1.1
prunus_persica	Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.2G245000_v2.0.a1 Prupe.5G095800_v2.0.a1 Prupe.5G095800_v2.0.a1
pyrus_communis	pycom01g16520 pycom07g19560 pycom14g09680
rosa_chinensis	RchiOBHm_Chr1g0369211 RchiOBHm_Chr7g0198411
rosa_laevigata	RLG00000003869 RLG00000027145
rosa_multiflora	Rmu_sc0001250.1_g000011 Rmu_sc0005807.1_g000002 Rmu_sc0030914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257710 Rroxscaffold_4G00287850
rosa_rugosa	Rorug01G0349100 Rorug07G0047800
rosa_samantha	Rh1AG356000 Rh1BG319600 Rh1CG333600 Rh1DG350300 Rh7AG171600 Rh7BG174400 Rh7CG180000 Rh7DG173500
rosa_wichuraiana	Rw1G031420 Rw7G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	14
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	1 cut(s)	223
AfaI	GTAC	3 cut(s)	170, 363, 501
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	4 cut(s)	106, 133, 199, 217
AjnI	CCWGG	1 cut(s)	422
AluBI	AGCT	5 cut(s)	67, 136, 248, 256, 290
AluI	AGCT	5 cut(s)	67, 136, 248, 256, 290
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	434
ApaLI	GTGCAC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	223
Asp700I	GAANNNNTTC	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	225, 270
BaeGI	GKGCMC	2 cut(s)	113, 484
BanI	GGYRCC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	291
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	424
BmrI	ACTGGG	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	50
BpmI	CTGGAG	2 cut(s)	246, 374
Bpu1102I	GCTNAGC	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	197
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	3 cut(s)	56, 229, 357
Bse3DI	GCAATG	1 cut(s)	448
BseBI	CCWGG	1 cut(s)	424
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	128, 240
BseNI	ACTGG	3 cut(s)	56, 229, 357
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	2 cut(s)	113, 484
BseXI	GCAGC	1 cut(s)	277
BseYI	CCCAGC	2 cut(s)	18, 281
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	139
Bso31I	GGTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	113, 484
Bsp143I	GATC	1 cut(s)	426
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	1 cut(s)	342
BspCNI	CTCAG	2 cut(s)	129, 241
BspLI	GGNNCC	1 cut(s)	16
BspMAI	CTGCAG	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	434
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	3 cut(s)	56, 229, 357
BssMI	GATC	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	3 cut(s)	49, 173, 417
Bst6I	CTCTTC	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstDEI	CTNAG	3 cut(s)	137, 249, 504
BstEII	GGTNACC	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	1 cut(s)	429
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	426
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 117, 245
BstNI	CCWGG	1 cut(s)	424
BstPI	GGTNACC	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	72
BstSLI	GKGCMC	2 cut(s)	113, 484
BstV1I	GCAGC	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	115, 350
BveI	ACCTGC	1 cut(s)	244
Csp6I	GTAC	3 cut(s)	169, 362, 500
CspCI	CAANNNNNGTGG	2 cut(s)	80, 115
CviAII	CATG	1 cut(s)	371
CviJI	RGCY	7 cut(s)	35, 67, 136, 178, 248, 256, 290
CviKI_1	RGCY	7 cut(s)	35, 67, 136, 178, 248, 256, 290
CviQI	GTAC	3 cut(s)	169, 362, 500
DdeI	CTNAG	3 cut(s)	137, 249, 504
DpnI	GATC	1 cut(s)	428
DpnII	GATC	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	197
Eco91I	GGTNACC	1 cut(s)	276
EcoO65I	GGTNACC	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	422
FaeI	CATG	1 cut(s)	374
FaiI	YATR	8 cut(s)	299, 372, 384, 405, 434, 471, 473, 498
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	1 cut(s)	471
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	1 cut(s)	291
GsaI	CCCAGC	2 cut(s)	22, 285
GsuI	CTGGAG	2 cut(s)	246, 374
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	1 cut(s)	374
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	225, 270
Hpy166II	GTNNAC	2 cut(s)	52, 111
Hpy188I	TCNGA	1 cut(s)	489
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	2 cut(s)	52, 111
HpyAV	CCTTC	2 cut(s)	152, 352
HpyCH4III	ACNGT	3 cut(s)	49, 173, 417
HpyCH4V	TGCA	6 cut(s)	30, 41, 74, 111, 120, 239
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 117, 245
HpyF3I	CTNAG	3 cut(s)	137, 249, 504
Hsp92II	CATG	1 cut(s)	374
Kzo9I	GATC	1 cut(s)	426
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	231, 276
MalI	GATC	1 cut(s)	428
MboI	GATC	1 cut(s)	426
MboII	GAAGA	2 cut(s)	187, 502
MhlI	GDGCHC	2 cut(s)	113, 484
MluCI	AATT	3 cut(s)	142, 223, 437
MnlI	CCTC	3 cut(s)	55, 160, 189
MroXI	GAANNNNTTC	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	424
MvaI	CCWGG	1 cut(s)	424
MwoI	GCNNNNNNNGC	3 cut(s)	108, 117, 245
NdeII	GATC	1 cut(s)	426
NlaIII	CATG	1 cut(s)	374
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	231, 276
PaqCI	CACCTGC	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	162
PflFI	GACNNNGTC	1 cut(s)	274
PfoI	TCCNGGA	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	422
PspEI	GGTNACC	1 cut(s)	276
PspFI	CCCAGC	2 cut(s)	18, 281
PspGI	CCWGG	1 cut(s)	422
PspN4I	GGNNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	3 cut(s)	170, 363, 501
RsaNI	GTAC	3 cut(s)	169, 362, 500
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	1 cut(s)	426
ScrFI	CCNGG	1 cut(s)	424
SduI	GDGCHC	2 cut(s)	113, 484
SfcI	CTRYAG	1 cut(s)	72
Sse9I	AATT	3 cut(s)	142, 223, 437
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	422
TaaI	ACNGT	3 cut(s)	49, 173, 417
TasI	AATT	3 cut(s)	142, 223, 437
TatI	WGTACW	1 cut(s)	168
TscAI	CASTG	2 cut(s)	122, 357
TseFI	GTSAC	2 cut(s)	231, 276
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	2 cut(s)	231, 276
TspRI	CASTG	2 cut(s)	122, 357
Tth111I	GACNNNGTC	1 cut(s)	274
VneI	GTGCAC	1 cut(s)	109
XapI	RAATTY	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.