FvH4_5g06440

Cytochrome p450

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
3768529 .. 3770233
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06440.t1

Sequence Viewer

Length: 1446 bp
ATGGCTTTAGTGGCATTTATTAATCAATTGGTGCAAGAACTACAAAGGAGTACTACACTCTTAAATCTTTTCCTGGTTTCTCTTCTCTTGCTGTCTATTTTTGTTGTGTTTTCACTTTCTAAATCAGGTGAGGCGCTCAATTTGCCGCCATCCCCGGCAAGGTTACCAGTGATTGGAAACCTTCACCAGCTAGGAAAACTCCCGCACCGCTCTCTTCAAGCTCTTTCAAAGACGTATGGCCCTCTAATGCTGCTGCGCTTGGGCCAAGTTCCGACGCTTATAGTTTCATCTGCAAAGATGACTAGGGAAGTTATGAAGACTCATGACGCTGTTTTCTGCAACCGTCCTCAATCCACTGCTGCAAACATATTACTCTATGGCTGCCGAGACGTAGTTTTTGCTCCTTATGGGGAGTACTGGAGACAAGTTCGAAAAATATGTGTTACTGAACTTCTGAGCCATAAAAGACTAAAAGATTTTCAGTATGCCATGGAAGATGAAGTTGCCGAATTATTCGATAGGATAAGTAAAGCGTGCCTCAGTGAGTCTCCTATTAATCTGGGTCAGATGCTGATAACAACCACCAGCAACATAATGTCTAGCTTCGGAGATTACTTCCCTTGTTTAAAATGGATTGATACTCTGACAGGATTGATTGCAAGCTTGAAAGCAACTGCTGATGAGTTTGATGGATTCTTTGATCATTTGATTGAAGAACATAAGAAAAGCAACGAAGAAGGTGAGGCGGATAAGAAGGACTTTGTGGATATTCTCCTCCAACTTCAAAAGGATACAATCCTTGATACTCGAGACAACCTTAAAGCTATCTTACAGGATATGTTTCTCGCTGGAAGTGATACTACTTCGTCGACTATGGAATGGTTAATGGCAGAGCTCGGGAGAAATCCGAGTGTGATGGAGAAAGTGCAAAACGAGATAAGAAGAGTGGTGGGGAAGAAGGCAAGGGTGGATGTGCATGATATCACTAAAATGCACTACTTCAAATGTGTGTTCCAAGAAACTATAAGGCTACATCCTCCAACACCTCTAGTTCCTCGAGAAACAACTGAGGCAGTAGAGTTGGGAGGTTATCATATCCCTGCAAAAACAAGAGTGTTTGTCAATGCATTCGCAATCCAAAGGGACCCCGAATTCTGGGAAAGGCCGGATGAGTTTCTGCCGGAGAGATTTGAGAGCGATTCGGTGGATATCAAAGGAGAGAACTTCCATTATATCCCATTTGGTGGTGGTAGAAGAGGGTGCCCTGGACAGGCCTTTGGGGTTGCTTCATCTGAATATGTGCTACCCAACCTTCTATATTGGTTTGATTGGAAGTTGCCAAGTGGTAGAGCAGAGGCTGAGGCCTTAGACATGAGTGAACTTTGTGGAAGCACCATGCATAAGAAATATCCTCTACATCTTCACCCGGTACTACACTCACCTTGA

Protein Analysis

482

Amino Acids

54.47

Weight (kDa)

6.13

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 49 - 201 3.2e-22 Cytochrome P450
p450 PF00067 204 - 456 3e-71 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1260
AccB7I CCANNNNNTGG 2 cut(s) 173, 1244
AccBSI CCGCTC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 869
AciI CCGC 4 cut(s) 146, 203, 208, 746
AcsI RAATTY 1 cut(s) 1151
AfaI GTAC 3 cut(s) 52, 416, 1431
AfiI CCNNNNNNNGG 5 cut(s) 159, 173, 1155, 1244, 1270
AgsI TTSAA 6 cut(s) 218, 228, 667, 713, 785, 1003
AjnI CCWGG 2 cut(s) 72, 1264
AluBI AGCT 6 cut(s) 190, 221, 603, 663, 824, 895
AluI AGCT 6 cut(s) 190, 221, 603, 663, 824, 895
Alw21I GWGCWC 1 cut(s) 897
Alw26I GTCTC 4 cut(s) 381, 415, 552, 804
AlwNI CAGNNNCTG 2 cut(s) 571, 1358
Ama87I CYCGRG 3 cut(s) 807, 896, 1056
AoxI GGCC 5 cut(s) 238, 262, 1163, 1272, 1362
ApeKI GCWGC 4 cut(s) 250, 253, 359, 381
ApoI RAATTY 1 cut(s) 1151
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
AseI ATTAAT 2 cut(s) 21, 555
AspLEI GCGC 2 cut(s) 136, 258
AspS9I GGNCC 3 cut(s) 239, 262, 1144
AsuC2I CCSGG 2 cut(s) 155, 1427
AsuHPI GGTGA 5 cut(s) 140, 176, 752, 1415, 1431
AsuII TTCGAA 1 cut(s) 430
AvaI CYCGRG 3 cut(s) 807, 896, 1056
AvaII GGWCC 1 cut(s) 1144
BaeGI GKGCMC 1 cut(s) 1265
BanI GGYRCC 1 cut(s) 1260
BanII GRGCYC 1 cut(s) 897
BarI GAAGNNNNNNTAC 2 cut(s) 844, 876
BbsI GAAGAC 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 897
BbvCI CCTCAGC 1 cut(s) 1359
BbvI GCAGC 4 cut(s) 237, 240, 346, 368
BccI CCATC 3 cut(s) 157, 683, 910
BciT130I CCWGG 2 cut(s) 74, 1266
BciVI GTATCC 1 cut(s) 784
BclI TGATCA 1 cut(s) 700
BcnI CCSGG 2 cut(s) 155, 1427
BcoDI GTCTC 4 cut(s) 381, 415, 552, 804
BfaI CTAG 4 cut(s) 191, 303, 600, 1049
BfoI RGCGCY 1 cut(s) 137
BfuI GTATCC 1 cut(s) 784
BisI GCNGC 5 cut(s) 146, 251, 254, 360, 382
BlsI GCNGC 5 cut(s) 147, 252, 255, 361, 383
BmcAI AGTACT 2 cut(s) 52, 416
Bme1390I CCNGG 4 cut(s) 74, 155, 1266, 1427
Bme18I GGWCC 1 cut(s) 1144
BmeT110I CYCGRG 3 cut(s) 807, 896, 1056
BmgT120I GGNCC 3 cut(s) 239, 262, 1144
BmiI GGNNCC 3 cut(s) 1145, 1146, 1262
BmrFI CCNGG 4 cut(s) 74, 155, 1266, 1427
BmsI GCATC 1 cut(s) 558
BpiI GAAGAC 1 cut(s) 323
BpmI CTGGAG 1 cut(s) 439
Bpu10I CCTNAGC 1 cut(s) 1359
Bpu14I TTCGAA 1 cut(s) 430
BpuMI CCSGG 2 cut(s) 155, 1427
BsaJI CCNNGG 3 cut(s) 153, 489, 1264
Bsc4I CCNNNNNNNGG 5 cut(s) 159, 173, 1155, 1244, 1270
Bse1I ACTGG 2 cut(s) 167, 422
BseBI CCWGG 2 cut(s) 74, 1266
BseDI CCNNGG 3 cut(s) 153, 489, 1264
BseGI GGATG 4 cut(s) 149, 976, 1033, 1174
BseLI CCNNNNNNNGG 5 cut(s) 159, 173, 1155, 1244, 1270
BseMII CTCAG 4 cut(s) 446, 553, 1059, 1350
BseNI ACTGG 2 cut(s) 167, 422
BseRI GAGGAG 1 cut(s) 764
BseSI GKGCMC 1 cut(s) 1265
BseXI GCAGC 4 cut(s) 237, 240, 346, 368
BshFI GGCC 5 cut(s) 240, 264, 1165, 1274, 1364
BshNI GGYRCC 1 cut(s) 1260
BsiHKAI GWGCWC 1 cut(s) 897
BsiHKCI CYCGRG 3 cut(s) 807, 896, 1056
BsiSI CCGG 4 cut(s) 155, 1166, 1181, 1427
BslFI GGGAC 1 cut(s) 1157
BslI CCNNNNNNNGG 5 cut(s) 159, 173, 1155, 1244, 1270
BsmAI GTCTC 4 cut(s) 381, 415, 552, 804
BsmBI CGTCTC 1 cut(s) 381
BsmFI GGGAC 1 cut(s) 1157
BsmI GAATGC 1 cut(s) 1127
BsnI GGCC 5 cut(s) 240, 264, 1165, 1274, 1364
BsoBI CYCGRG 3 cut(s) 807, 896, 1056
Bsp119I TTCGAA 1 cut(s) 430
Bsp1286I GDGCHC 2 cut(s) 897, 1265
Bsp143I GATC 1 cut(s) 700
Bsp19I CCATGG 1 cut(s) 489
BspACI CCGC 4 cut(s) 146, 203, 208, 746
BspANI GGCC 5 cut(s) 240, 264, 1165, 1274, 1364
BspCNI CTCAG 4 cut(s) 447, 552, 1060, 1351
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 3 cut(s) 1145, 1146, 1262
BspT104I TTCGAA 1 cut(s) 430
BspT107I GGYRCC 1 cut(s) 1260
BsrBI CCGCTC 1 cut(s) 210
BsrI ACTGG 2 cut(s) 167, 422
BssECI CCNNGG 3 cut(s) 153, 489, 1264
BssMI GATC 1 cut(s) 700
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 2 cut(s) 74, 1266
Bst4CI ACNGT 1 cut(s) 344
Bst6I CTCTTC 4 cut(s) 87, 219, 937, 1249
BstBI TTCGAA 1 cut(s) 430
BstC8I GCNNGC 2 cut(s) 535, 661
BstDEI CTNAG 5 cut(s) 455, 539, 1068, 1359, 1366
BstDSI CCRYGG 1 cut(s) 489
BstEII GGTNACC 1 cut(s) 162
BstF5I GGATG 4 cut(s) 149, 976, 1033, 1174
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 2 cut(s) 136, 258
BstKTI GATC 1 cut(s) 703
BstMAI GTCTC 4 cut(s) 381, 415, 552, 804
BstMBI GATC 1 cut(s) 700
BstMWI GCNNNNNNNGC 2 cut(s) 11, 142
BstNI CCWGG 2 cut(s) 74, 1266
BstPI GGTNACC 1 cut(s) 162
BstSCI CCNGG 4 cut(s) 72, 153, 1264, 1425
BstSLI GKGCMC 1 cut(s) 1265
BstV1I GCAGC 4 cut(s) 237, 240, 346, 368
BstV2I GAAGAC 1 cut(s) 323
BsuI GTATCC 1 cut(s) 784
BsuRI GGCC 5 cut(s) 240, 264, 1165, 1274, 1364
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 4 cut(s) 149, 976, 1033, 1174
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 3 cut(s) 174, 354, 547
Cac8I GCNNGC 2 cut(s) 535, 661
CaiI CAGNNNCTG 2 cut(s) 571, 1358
CciI TCATGA 1 cut(s) 322
CfoI GCGC 2 cut(s) 136, 258
Cfr13I GGNCC 3 cut(s) 239, 262, 1144
CseI GACGC 2 cut(s) 283, 335
Csp6I GTAC 3 cut(s) 51, 415, 1430
CviAII CATG 5 cut(s) 323, 490, 977, 1372, 1396
CviQI GTAC 3 cut(s) 51, 415, 1430
DdeI CTNAG 5 cut(s) 455, 539, 1068, 1359, 1366
DpnI GATC 1 cut(s) 702
DpnII GATC 1 cut(s) 700
DraI TTTAAA 1 cut(s) 627
Eam1104I CTCTTC 4 cut(s) 87, 219, 937, 1249
EarI CTCTTC 4 cut(s) 87, 219, 937, 1249
EciI GGCGGA 1 cut(s) 761
Ecl136II GAGCTC 1 cut(s) 895
Eco130I CCWWGG 1 cut(s) 489
Eco147I AGGCCT 2 cut(s) 1274, 1364
Eco24I GRGCYC 1 cut(s) 897
Eco32I GATATC 2 cut(s) 982, 1210
Eco47I GGWCC 1 cut(s) 1144
Eco53kI GAGCTC 1 cut(s) 895
Eco88I CYCGRG 3 cut(s) 807, 896, 1056
Eco91I GGTNACC 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 895
EcoO109I RGGNCCY 1 cut(s) 1144
EcoO65I GGTNACC 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 1151
EcoRII CCWGG 2 cut(s) 72, 1264
EcoRV GATATC 2 cut(s) 982, 1210
EcoT14I CCWWGG 1 cut(s) 489
EcoT22I ATGCAT 2 cut(s) 1129, 1401
EcoT38I GRGCYC 1 cut(s) 897
ErhI CCWWGG 1 cut(s) 489
Esp3I CGTCTC 1 cut(s) 381
FaeI CATG 5 cut(s) 326, 493, 980, 1375, 1399
FalI AAGNNNNNCTT 2 cut(s) 743, 775
FaqI GGGAC 1 cut(s) 1157
FatI CATG 5 cut(s) 322, 489, 976, 1371, 1395
FauI CCCGC 1 cut(s) 210
FbaI TGATCA 1 cut(s) 700
FblI GTMKAC 1 cut(s) 869
Fnu4HI GCNGC 5 cut(s) 146, 251, 254, 360, 382
FokI GGATG 4 cut(s) 136, 983, 1020, 1181
FriOI GRGCYC 1 cut(s) 897
Fsp4HI GCNGC 5 cut(s) 146, 251, 254, 360, 382
FspBI CTAG 4 cut(s) 191, 303, 600, 1049
GlaI GCGC 2 cut(s) 135, 257
GluI GCNGC 5 cut(s) 146, 251, 254, 360, 382
GsuI CTGGAG 1 cut(s) 439
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 5 cut(s) 240, 264, 1165, 1274, 1364
HapII CCGG 4 cut(s) 155, 1166, 1181, 1427
HgaI GACGC 2 cut(s) 283, 335
HhaI GCGC 2 cut(s) 136, 258
Hin1II CATG 5 cut(s) 326, 493, 980, 1375, 1399
Hin6I GCGC 2 cut(s) 134, 256
HinP1I GCGC 2 cut(s) 134, 256
HincII GTYRAC 1 cut(s) 870
HindII GTYRAC 1 cut(s) 870
HindIII AAGCTT 1 cut(s) 661
HinfI GANTC 4 cut(s) 319, 545, 693, 1199
HpaII CCGG 4 cut(s) 155, 1166, 1181, 1427
HphI GGTGA 5 cut(s) 140, 176, 752, 1415, 1431
Hpy166II GTNNAC 2 cut(s) 870, 1379
Hpy188I TCNGA 7 cut(s) 273, 456, 567, 608, 645, 909, 1294
Hpy188III TCNNGA 4 cut(s) 323, 809, 898, 1058
Hpy8I GTNNAC 2 cut(s) 870, 1379
Hpy99I CGWCG 2 cut(s) 277, 871
HpyAV CCTTC 5 cut(s) 191, 731, 748, 952, 1322
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 2 cut(s) 233, 390
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 142
HpyF3I CTNAG 5 cut(s) 455, 539, 1068, 1359, 1366
HpySE526I ACGT 2 cut(s) 233, 390
Hsp92II CATG 5 cut(s) 326, 493, 980, 1375, 1399
HspAI GCGC 2 cut(s) 134, 256
KflI GGGWCCC 1 cut(s) 1144
Ksp22I TGATCA 1 cut(s) 700
Kzo9I GATC 1 cut(s) 700
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 4 cut(s) 237, 240, 346, 368
LweI GCATC 1 cut(s) 558
MaeI CTAG 4 cut(s) 191, 303, 600, 1049
MaeII ACGT 2 cut(s) 233, 390
MaeIII GTNAC 2 cut(s) 162, 442
MalI GATC 1 cut(s) 702
MbiI CCGCTC 1 cut(s) 210
MboI GATC 1 cut(s) 700
MfeI CAATTG 1 cut(s) 26
MhlI GDGCHC 2 cut(s) 897, 1265
MluCI AATT 4 cut(s) 26, 139, 509, 1151
MlyI GAGTC 2 cut(s) 313, 554
MmeI TCCRAC 3 cut(s) 296, 802, 1064
Mph1103I ATGCAT 2 cut(s) 1129, 1401
MseI TTAA 6 cut(s) 21, 62, 555, 626, 819, 884
MslI CAYNNNNRTG 1 cut(s) 989
MspI CCGG 4 cut(s) 155, 1166, 1181, 1427
MspR9I CCNGG 4 cut(s) 74, 155, 1266, 1427
MunI CAATTG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 1127
MvaI CCWGG 2 cut(s) 74, 1266
MwoI GCNNNNNNNGC 2 cut(s) 11, 142
NciI CCSGG 2 cut(s) 155, 1427
NcoI CCATGG 1 cut(s) 489
NdeII GATC 1 cut(s) 700
NlaIII CATG 5 cut(s) 326, 493, 980, 1375, 1399
NlaIV GGNNCC 3 cut(s) 1145, 1146, 1262
NmeAIII GCCGAG 1 cut(s) 410
NsiI ATGCAT 2 cut(s) 1129, 1401
NspV TTCGAA 1 cut(s) 430
PaeR7I CTCGAG 2 cut(s) 807, 1056
PagI TCATGA 1 cut(s) 322
PceI AGGCCT 2 cut(s) 1274, 1364
PctI GAATGC 1 cut(s) 1127
PfeI GAWTC 2 cut(s) 693, 1199
PflMI CCANNNNNTGG 2 cut(s) 173, 1244
PkrI GCNGC 5 cut(s) 147, 252, 255, 361, 383
PleI GAGTC 2 cut(s) 313, 553
PpsI GAGTC 2 cut(s) 313, 553
PpuMI RGGWCCY 1 cut(s) 1144
PshBI ATTAAT 2 cut(s) 21, 555
Psp124BI GAGCTC 1 cut(s) 897
Psp5II RGGWCCY 1 cut(s) 1144
Psp6I CCWGG 2 cut(s) 72, 1264
PspEI GGTNACC 1 cut(s) 162
PspGI CCWGG 2 cut(s) 72, 1264
PspN4I GGNNCC 3 cut(s) 1145, 1146, 1262
PspPI GGNCC 3 cut(s) 239, 262, 1144
PspPPI RGGWCCY 1 cut(s) 1144
PstNI CAGNNNCTG 2 cut(s) 571, 1358
RsaI GTAC 3 cut(s) 52, 416, 1431
RsaNI GTAC 3 cut(s) 51, 415, 1430
RseI CAYNNNNRTG 1 cut(s) 989
SacI GAGCTC 1 cut(s) 897
SalI GTCGAC 1 cut(s) 868
SaqAI TTAA 6 cut(s) 21, 62, 555, 626, 819, 884
SatI GCNGC 5 cut(s) 146, 251, 254, 360, 382
Sau3AI GATC 1 cut(s) 700
Sau96I GGNCC 3 cut(s) 239, 262, 1144
ScaI AGTACT 2 cut(s) 52, 416
SchI GAGTC 2 cut(s) 313, 554
ScrFI CCNGG 4 cut(s) 74, 155, 1266, 1427
SduI GDGCHC 2 cut(s) 897, 1265
SfaNI GCATC 1 cut(s) 558
Sfr274I CTCGAG 2 cut(s) 807, 1056
SfuI TTCGAA 1 cut(s) 430
SinI GGWCC 1 cut(s) 1144
SlaI CTCGAG 2 cut(s) 807, 1056
SmiMI CAYNNNNRTG 1 cut(s) 989
SmlI CTYRAG 2 cut(s) 807, 1056
SmoI CTYRAG 2 cut(s) 807, 1056
Sse9I AATT 4 cut(s) 26, 139, 509, 1151
SseBI AGGCCT 2 cut(s) 1274, 1364
SsiI CCGC 4 cut(s) 146, 203, 208, 746
SspMI CTAG 4 cut(s) 191, 303, 600, 1049
SstI GAGCTC 1 cut(s) 897
StuI AGGCCT 2 cut(s) 1274, 1364
StyD4I CCNGG 4 cut(s) 72, 153, 1264, 1425
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 2 cut(s) 236, 393
TaqI TCGA 5 cut(s) 430, 516, 808, 869, 1057
TasI AATT 4 cut(s) 26, 139, 509, 1151
TatI WGTACW 2 cut(s) 50, 414
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 2 cut(s) 693, 1199
Tru1I TTAA 6 cut(s) 21, 62, 555, 626, 819, 884
Tru9I TTAA 6 cut(s) 21, 62, 555, 626, 819, 884
TscAI CASTG 3 cut(s) 174, 361, 547
TseI GCWGC 4 cut(s) 250, 253, 359, 381
TspDTI ATGAA 4 cut(s) 276, 329, 513, 1278
TspRI CASTG 3 cut(s) 174, 361, 547
Van91I CCANNNNNTGG 2 cut(s) 173, 1244
VpaK11BI GGWCC 1 cut(s) 1144
VspI ATTAAT 2 cut(s) 21, 555
XapI RAATTY 1 cut(s) 1151
XhoI CTCGAG 2 cut(s) 807, 1056
XmiI GTMKAC 1 cut(s) 869
XspI CTAG 4 cut(s) 191, 303, 600, 1049
ZrmI AGTACT 2 cut(s) 52, 416
Zsp2I ATGCAT 2 cut(s) 1129, 1401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.