Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001759

Physical Location & Seq

Genomic Coordinates Forward (+)

10784712 .. 10785065

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG128100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCTGAGCACAACCTTCAACAACATACTTTCTAGGTGTGTTATTGGAAACAGGTTTGTAGAGGAAAATGATAATTGGTTTGGAGAGGCATCAAGAAGGTTGTTGGTTCAACTCACGGCTTTCAGTTTTGGAGATATCTTCCCTTGTTTGAGATGGATTGACAATCTTAGAGGATTCATTGCAAGTTTGAAAGCAACTTCTGCCAAATTAGATGGGTTCTTTGATCAGTTGATTGAAGAACACAAGACCACAAAGGCAGAAGGTATGCCCGAAACAAGTGATTTTGTGGATATTCTTGTCAAACTTCAAAAAGATGACATACTTAACTTGGATCTCACGCTCAAGACAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00460 ko00590 ko00591 ko00830 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00460 map00590 map00591 map00830 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

117

Amino Acids

13.34

Weight (kDa)

4.9

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g17450 FvH4_5g06440 FvH4_5g06460
malus_domestica	MD00G1167000.v1.1 MD06G1164400.v1.1 MD06G1164700.v1.1 MD14G1169200.v1.1 MD14G1169600.v1.1 MD14G1169700.v1.1
prunus_persica	Prupe.3G184200_v2.0.a1 Prupe.5G163700_v2.0.a1 Prupe.5G163800_v2.0.a1 Prupe.5G164000_v2.0.a1 Prupe.5G164100_v2.0.a1
pyrus_communis	pycom06g14730 pycom14g14150
rosa_chinensis	RchiOBHm_Chr1g0314001 RchiOBHm_Chr4g0420441 RchiOBHm_Chr5g0028981 RchiOBHm_Chr7g0192271 RchiOBHm_Chr7g0192301 RchiOBHm_Chr7g0233491
rosa_laevigata	RLG00000004378 RLG00000004380 RLG00000007763 RLG00000033133
rosa_multiflora	Rmu_sc0001559.1_g000001 Rmu_sc0009042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00050910 Rroxscaffold_3G00263130
rosa_rugosa	Rorug03G0295500 Rorug05G0112200 Rorug07G0000300 Rorug07G0000400
rosa_samantha	Rh4AG225500 Rh5AG204200 Rh5CG223300 Rh7AG124500 Rh7AG124700 Rh7BG126300 Rh7BG126500 Rh7DG128100 Rh7DG128300
rosa_wichuraiana	Rw0G008520 Rw4G011870 Rw5G018510 Rw7G010670 Rw7G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	339
AgsI	TTSAA	5 cut(s)	19, 110, 190, 236, 308
Alw21I	GWGCWC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	11
BccI	CCATC	2 cut(s)	147, 206
BceAI	ACGGC	1 cut(s)	132
BclI	TGATCA	1 cut(s)	223
BfaI	CTAG	1 cut(s)	33
BlpI	GCTNAGC	1 cut(s)	5
BmsI	GCATC	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	223, 331
Bsp1720I	GCTNAGC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	177
BssMI	GATC	2 cut(s)	223, 331
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstDEI	CTNAG	2 cut(s)	5, 167
BstKTI	GATC	2 cut(s)	226, 334
BstMBI	GATC	2 cut(s)	223, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
CviJI	RGCY	1 cut(s)	119
CviKI_1	RGCY	1 cut(s)	119
DdeI	CTNAG	2 cut(s)	5, 167
DpnI	GATC	2 cut(s)	225, 333
DpnII	GATC	2 cut(s)	223, 331
Eco32I	GATATC	1 cut(s)	136
EcoRV	GATATC	1 cut(s)	136
FaiI	YATR	3 cut(s)	26, 266, 320
FbaI	TGATCA	1 cut(s)	223
FspBI	CTAG	1 cut(s)	33
HinfI	GANTC	1 cut(s)	174
Hpy188III	TCNNGA	2 cut(s)	93, 343
HpyAV	CCTTC	3 cut(s)	25, 90, 254
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	2 cut(s)	5, 167
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	223, 331
LpnPI	CCDG	1 cut(s)	37
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	1 cut(s)	33
MalI	GATC	2 cut(s)	225, 333
MboI	GATC	2 cut(s)	223, 331
MboII	GAAGA	2 cut(s)	130, 248
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	2 cut(s)	73, 206
MnlI	CCTC	3 cut(s)	55, 79, 164
MseI	TTAA	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	2 cut(s)	223, 331
PfeI	GAWTC	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	331
SaqAI	TTAA	1 cut(s)	324
Sau3AI	GATC	2 cut(s)	223, 331
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	5 cut(s)	17, 38, 56, 101, 265
SfaNI	GCATC	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	73, 206
SspMI	CTAG	1 cut(s)	33
TasI	AATT	2 cut(s)	73, 206
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TspDTI	ATGAA	1 cut(s)	166
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.