MD14G1169700.v1.1

Cytochrome p450

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
26332563 .. 26334240
1678 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1169700.v1.1.491

Sequence Viewer

Length: 1260 bp
ATGGCTCTTCTAGCACTTGTGTTTGAGCAGCTGCAGAAAAATGTCTTTCTTCTTCCTCTTCTCGTCCTTTCTGCGTTCATTCTCTTTTCGTTTACTAGATCATCGTCCAATGGCGATGAGAAACGCAAACTCAAGTTACCACCTTCCCCGCCAAGGTTGCCATTGATTGGAAACCTTCACCAGTTAGGCACATTCCCGCACCTTTCTCTCCATGCTCTCTCGAAAAAGTATGGCAATTTAATGCTAGTGCATTTTGGGAAAGTTTCGACTCTGATTGTTTCGTCTGCAGAGATGGCCAAGGAGGTGATGAAGACGCAGGACATTGCTTTCTGCAGCCGGCCGAAAGCCACTGCTCCAGGAATATTGTTCTATGACGCTCATGATGTGGCGTTTGCTCCTTACGGGGAGTCCAGGAGGCAAGTTCGGAAAATCTGTGTTCTTGAGCTTCTCAGTCTTAAGAAGGTGTCACAGTTTCAATACGCAAAGGTGGAAGAAGTTTCCTCGTTGGTCGGAAAGATTCGCAAAGCGTTGAGTCTCAATGGCGGGGGTCCTATTGTTCTGAGTGATCTGCTGGTGGCAACCTCCAACAACATCATCTGCAGGTGTATTCTCGGACAAAAGTTTGAGGGCGAAGAGGACAAGTGGTTCGGAGATGTGACGAAAGATTTGATGTGCCAACTCATAAGTTTCAGTTTTACGGATTACTTTGGTCCGAGGATGAGTTGGCTTGACCGTGCTAGAGGCCACATTAAACATTTGACATCAATTTGGTCCGAATTTGATAAGTTTTTCGATAAGTTGATTGCCGAACATAAGGAGGCAGAGAAAGAAGGCAAGCCTCGCAAGAAGGATTTCGTGGATATTCTCCTCCAAGTTCGAAAGGATGGCAATGACTTTGAGCTCAAAAGTGACCACCTCAAATTACTTCTACTGGACATGTTTGTCGGAGGAAGTGATACTAGTTGGACTGCCATGATATGGTTGATGACAGAGCTTGGGAAAAATCAAAGTGTGATGAAGAAGAGTGGTCAGGAGTTTGAACTCATCCCGTTCGGTGCTGGGAGAAGAGTGTGCCCTGGACTCGGCTTTGGGGTTGCTTCAGCTGAATATGTGTTTTCCAACCTTCTATATTGGTTTGATATGAAATTGCCTAGTGGTGGTAAAGCATTGGCCAAGACCATGGACACCAATGAAGTTTACAGACTCTCAGTCCATAAGAAGGCTCCTCTCAACCTTATCCCAATCCCATACAACCCTTGA

Protein Analysis

420

Amino Acids

47.1

Weight (kDa)

9.25

Isoelectric Point (pI)

30.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 47 - 345 2.3e-43 Cytochrome P450
p450 PF00067 342 - 391 1.3e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 591
AasI GACNNNNNNGTC 1 cut(s) 941
Acc36I ACCTGC 1 cut(s) 591
AccB7I CCANNNNNTGG 2 cut(s) 167, 978
AciI CCGC 3 cut(s) 149, 197, 543
AcoI YGGCCR 3 cut(s) 294, 338, 1170
AcsI RAATTY 1 cut(s) 776
AcuI CTGAAG 1 cut(s) 1083
AfiI CCNNNNNNNGG 6 cut(s) 153, 167, 978, 1082, 1157, 1219
AflII CTTAAG 1 cut(s) 455
AflIII ACRYGT 1 cut(s) 936
AgsI TTSAA 2 cut(s) 476, 1040
AhdI GACNNNNNGTC 1 cut(s) 1208
AhlI ACTAGT 1 cut(s) 959
AjnI CCWGG 3 cut(s) 355, 410, 1075
AloI GAACNNNNNNTCC 2 cut(s) 629, 661
AluBI AGCT 5 cut(s) 31, 445, 901, 994, 1103
AluI AGCT 5 cut(s) 31, 445, 901, 994, 1103
Alw21I GWGCWC 1 cut(s) 903
Alw26I GTCTC 1 cut(s) 539
AoxI GGCC 4 cut(s) 294, 338, 742, 1170
ApeKI GCWGC 3 cut(s) 28, 31, 333
ApoI RAATTY 1 cut(s) 776
ArsI GACNNNNNNTTYG 4 cut(s) 629, 649, 661, 681
Asp700I GAANNNNTTC 1 cut(s) 851
AspS9I GGNCC 3 cut(s) 548, 710, 771
AsuHPI GGTGA 2 cut(s) 170, 316
AsuII TTCGAA 1 cut(s) 877
AvaII GGWCC 3 cut(s) 548, 710, 771
BaeGI GKGCMC 1 cut(s) 1076
BalI TGGCCA 2 cut(s) 296, 1172
BanII GRGCYC 1 cut(s) 903
BbsI GAAGAC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 903
BbvI GCAGC 3 cut(s) 18, 40, 345
BccI CCATC 2 cut(s) 286, 878
BciT130I CCWGG 3 cut(s) 357, 412, 1077
BcoDI GTCTC 1 cut(s) 539
BcuI ACTAGT 1 cut(s) 959
BfaI CTAG 6 cut(s) 11, 96, 245, 738, 960, 1152
BfmI CTRYAG 4 cut(s) 32, 285, 331, 598
BfrI CTTAAG 1 cut(s) 455
BfuAI ACCTGC 1 cut(s) 591
BisI GCNGC 3 cut(s) 29, 32, 334
BlsI GCNGC 3 cut(s) 30, 33, 335
Bme1390I CCNGG 3 cut(s) 357, 412, 1077
Bme18I GGWCC 3 cut(s) 548, 710, 771
BmeRI GACNNNNNGTC 1 cut(s) 1208
BmgT120I GGNCC 3 cut(s) 548, 710, 771
BmiI GGNNCC 2 cut(s) 549, 1224
BmrFI CCNGG 3 cut(s) 357, 412, 1077
BpiI GAAGAC 1 cut(s) 317
BpmI CTGGAG 1 cut(s) 339
Bpu14I TTCGAA 1 cut(s) 877
BpuEI CTTGAG 2 cut(s) 116, 461
BsaJI CCNNGG 5 cut(s) 152, 297, 713, 1075, 1179
Bsc4I CCNNNNNNNGG 6 cut(s) 153, 167, 978, 1082, 1157, 1219
Bse118I RCCGGY 1 cut(s) 336
Bse1I ACTGG 2 cut(s) 181, 936
Bse3DI GCAATG 2 cut(s) 321, 895
BseBI CCWGG 3 cut(s) 357, 412, 1077
BseDI CCNNGG 5 cut(s) 152, 297, 713, 1075, 1179
BseGI GGATG 3 cut(s) 723, 889, 1044
BseLI CCNNNNNNNGG 6 cut(s) 153, 167, 978, 1082, 1157, 1219
BseMI GCAATG 2 cut(s) 321, 895
BseMII CTCAG 3 cut(s) 463, 551, 1221
BseNI ACTGG 2 cut(s) 181, 936
BseRI GAGGAG 2 cut(s) 857, 1215
BseSI GKGCMC 1 cut(s) 1076
BseX3I CGGCCG 1 cut(s) 338
BseXI GCAGC 3 cut(s) 18, 40, 345
BseYI CCCAGC 1 cut(s) 1058
Bsh1285I CGRYCG 1 cut(s) 341
BshFI GGCC 4 cut(s) 296, 340, 744, 1172
BsiEI CGRYCG 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 903
BsiSI CCGG 1 cut(s) 337
BslI CCNNNNNNNGG 6 cut(s) 153, 167, 978, 1082, 1157, 1219
BsmAI GTCTC 1 cut(s) 539
BsnI GGCC 4 cut(s) 296, 340, 744, 1172
Bsp119I TTCGAA 1 cut(s) 877
Bsp1286I GDGCHC 2 cut(s) 903, 1076
Bsp143I GATC 2 cut(s) 98, 565
Bsp19I CCATGG 1 cut(s) 1179
BspACI CCGC 3 cut(s) 149, 197, 543
BspANI GGCC 4 cut(s) 296, 340, 744, 1172
BspCNI CTCAG 3 cut(s) 462, 552, 1220
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 549, 1224
BspMAI CTGCAG 4 cut(s) 36, 289, 335, 602
BspMI ACCTGC 1 cut(s) 591
BspQI GCTCTTC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 877
BspTI CTTAAG 1 cut(s) 455
BsrDI GCAATG 2 cut(s) 321, 895
BsrFI RCCGGY 1 cut(s) 336
BsrI ACTGG 2 cut(s) 181, 936
BssAI RCCGGY 1 cut(s) 336
BssECI CCNNGG 5 cut(s) 152, 297, 713, 1075, 1179
BssMI GATC 2 cut(s) 98, 565
BssT1I CCWWGG 3 cut(s) 152, 297, 1179
Bst2UI CCWGG 3 cut(s) 357, 412, 1077
Bst4CI ACNGT 2 cut(s) 471, 734
Bst6I CTCTTC 5 cut(s) 12, 63, 627, 1016, 1060
BstAFI CTTAAG 1 cut(s) 455
BstBI TTCGAA 1 cut(s) 877
BstC8I GCNNGC 2 cut(s) 338, 836
BstDEI CTNAG 3 cut(s) 449, 560, 1207
BstDSI CCRYGG 1 cut(s) 1179
BstF5I GGATG 3 cut(s) 723, 889, 1044
BstKTI GATC 2 cut(s) 101, 568
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 2 cut(s) 98, 565
BstMCI CGRYCG 1 cut(s) 341
BstMWI GCNNNNNNNGC 4 cut(s) 11, 157, 293, 840
BstNI CCWGG 3 cut(s) 357, 412, 1077
BstNSI RCATGY 1 cut(s) 940
BstSCI CCNGG 3 cut(s) 355, 410, 1075
BstSFI CTRYAG 4 cut(s) 32, 285, 331, 598
BstSLI GKGCMC 1 cut(s) 1076
BstV1I GCAGC 3 cut(s) 18, 40, 345
BstV2I GAAGAC 1 cut(s) 317
BstXI CCANNNNNNTGG 1 cut(s) 1180
BstZI CGGCCG 1 cut(s) 338
BsuRI GGCC 4 cut(s) 296, 340, 744, 1172
BtgI CCRYGG 1 cut(s) 1179
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 3 cut(s) 723, 889, 1044
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 348
BveI ACCTGC 1 cut(s) 591
Cac8I GCNNGC 2 cut(s) 338, 836
CciI TCATGA 1 cut(s) 379
Cfr10I RCCGGY 1 cut(s) 336
Cfr13I GGNCC 3 cut(s) 548, 710, 771
CseI GACGC 2 cut(s) 322, 383
CviAII CATG 5 cut(s) 212, 380, 937, 973, 1180
DdeI CTNAG 3 cut(s) 449, 560, 1207
DpnI GATC 2 cut(s) 100, 567
DpnII GATC 2 cut(s) 98, 565
DrdI GACNNNNNNGTC 1 cut(s) 941
DriI GACNNNNNGTC 1 cut(s) 1208
DseDI GACNNNNNNGTC 1 cut(s) 941
EaeI YGGCCR 3 cut(s) 294, 338, 1170
EagI CGGCCG 1 cut(s) 338
Eam1104I CTCTTC 5 cut(s) 12, 63, 627, 1016, 1060
Eam1105I GACNNNNNGTC 1 cut(s) 1208
EarI CTCTTC 5 cut(s) 12, 63, 627, 1016, 1060
Ecl136II GAGCTC 1 cut(s) 901
EclXI CGGCCG 1 cut(s) 338
Eco130I CCWWGG 3 cut(s) 152, 297, 1179
Eco24I GRGCYC 1 cut(s) 903
Eco47I GGWCC 3 cut(s) 548, 710, 771
Eco52I CGGCCG 1 cut(s) 338
Eco53kI GAGCTC 1 cut(s) 901
Eco57I CTGAAG 1 cut(s) 1083
EcoICRI GAGCTC 1 cut(s) 901
EcoO109I RGGNCCY 1 cut(s) 548
EcoRII CCWGG 3 cut(s) 355, 410, 1075
EcoT14I CCWWGG 3 cut(s) 152, 297, 1179
EcoT38I GRGCYC 1 cut(s) 903
ErhI CCWWGG 3 cut(s) 152, 297, 1179
FaeI CATG 5 cut(s) 215, 383, 940, 976, 1183
FatI CATG 5 cut(s) 211, 379, 936, 972, 1179
FauI CCCGC 3 cut(s) 156, 204, 536
Fnu4HI GCNGC 3 cut(s) 29, 32, 334
FokI GGATG 3 cut(s) 730, 896, 1031
FriOI GRGCYC 1 cut(s) 903
Fsp4HI GCNGC 3 cut(s) 29, 32, 334
FspBI CTAG 6 cut(s) 11, 96, 245, 738, 960, 1152
GluI GCNGC 3 cut(s) 29, 32, 334
GsaI CCCAGC 1 cut(s) 1062
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 4 cut(s) 296, 340, 744, 1172
HapII CCGG 1 cut(s) 337
HgaI GACGC 2 cut(s) 322, 383
Hin1II CATG 5 cut(s) 215, 383, 940, 976, 1183
HinfI GANTC 6 cut(s) 268, 407, 517, 532, 1080, 1203
HpaII CCGG 1 cut(s) 337
HphI GGTGA 2 cut(s) 170, 316
Hpy166II GTNNAC 2 cut(s) 93, 1198
Hpy188I TCNGA 9 cut(s) 273, 426, 512, 561, 614, 650, 714, 775, 947
Hpy188III TCNNGA 4 cut(s) 220, 380, 440, 1031
Hpy8I GTNNAC 2 cut(s) 93, 1198
HpyAV CCTTC 7 cut(s) 153, 185, 454, 824, 841, 1133, 1213
HpyCH4III ACNGT 2 cut(s) 471, 734
HpyCH4V TGCA 5 cut(s) 34, 250, 287, 333, 600
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 157, 293, 840
HpyF3I CTNAG 3 cut(s) 449, 560, 1207
Hsp92II CATG 5 cut(s) 215, 383, 940, 976, 1183
KroI GCCGGC 1 cut(s) 336
KroNI GCCGGC 1 cut(s) 338
Kzo9I GATC 2 cut(s) 98, 565
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 3 cut(s) 358, 400, 1228
Lsp1109I GCAGC 3 cut(s) 18, 40, 345
MaeI CTAG 6 cut(s) 11, 96, 245, 738, 960, 1152
MaeIII GTNAC 4 cut(s) 135, 465, 655, 908
MalI GATC 2 cut(s) 100, 567
MboI GATC 2 cut(s) 98, 565
MboII GAAGA 9 cut(s) 41, 44, 50, 322, 503, 644, 1030, 1033, 1077
MhlI GDGCHC 2 cut(s) 903, 1076
MlsI TGGCCA 2 cut(s) 296, 1172
MluCI AATT 5 cut(s) 235, 765, 776, 920, 1145
MluNI TGGCCA 2 cut(s) 296, 1172
MlyI GAGTC 5 cut(s) 262, 416, 541, 1074, 1197
MmeI TCCRAC 5 cut(s) 490, 609, 925, 944, 1143
Mox20I TGGCCA 2 cut(s) 296, 1172
MroNI GCCGGC 1 cut(s) 336
MroXI GAANNNNTTC 1 cut(s) 851
MscI TGGCCA 2 cut(s) 296, 1172
MseI TTAA 3 cut(s) 239, 456, 750
Msp20I TGGCCA 2 cut(s) 296, 1172
MspA1I CMGCKG 2 cut(s) 31, 1103
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 3 cut(s) 357, 412, 1077
MvaI CCWGG 3 cut(s) 357, 412, 1077
MwoI GCNNNNNNNGC 4 cut(s) 11, 157, 293, 840
NaeI GCCGGC 1 cut(s) 338
NcoI CCATGG 1 cut(s) 1179
NdeII GATC 2 cut(s) 98, 565
NgoMIV GCCGGC 1 cut(s) 336
NlaIII CATG 5 cut(s) 215, 383, 940, 976, 1183
NlaIV GGNNCC 2 cut(s) 549, 1224
NmeAIII GCCGAG 1 cut(s) 1062
NmuCI GTSAC 3 cut(s) 465, 655, 908
NspI RCATGY 1 cut(s) 940
NspV TTCGAA 1 cut(s) 877
PagI TCATGA 1 cut(s) 379
PaqCI CACCTGC 1 cut(s) 591
PciI ACATGT 1 cut(s) 936
PciSI GCTCTTC 1 cut(s) 12
PdiI GCCGGC 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 851
PfeI GAWTC 1 cut(s) 517
PflMI CCANNNNNTGG 2 cut(s) 167, 978
PfoI TCCNGGA 2 cut(s) 355, 410
PkrI GCNGC 3 cut(s) 30, 33, 335
PleI GAGTC 5 cut(s) 262, 415, 540, 1074, 1197
PpsI GAGTC 5 cut(s) 262, 415, 540, 1074, 1197
PpuMI RGGWCCY 1 cut(s) 548
PscI ACATGT 1 cut(s) 936
Psp124BI GAGCTC 1 cut(s) 903
Psp5II RGGWCCY 1 cut(s) 548
Psp6I CCWGG 3 cut(s) 355, 410, 1075
PspFI CCCAGC 1 cut(s) 1058
PspGI CCWGG 3 cut(s) 355, 410, 1075
PspN4I GGNNCC 2 cut(s) 549, 1224
PspPI GGNCC 3 cut(s) 548, 710, 771
PspPPI RGGWCCY 1 cut(s) 548
PstI CTGCAG 4 cut(s) 36, 289, 335, 602
PvuII CAGCTG 2 cut(s) 31, 1103
SacI GAGCTC 1 cut(s) 903
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 3 cut(s) 239, 456, 750
SatI GCNGC 3 cut(s) 29, 32, 334
Sau3AI GATC 2 cut(s) 98, 565
Sau96I GGNCC 3 cut(s) 548, 710, 771
SchI GAGTC 5 cut(s) 262, 416, 541, 1074, 1197
ScrFI CCNGG 3 cut(s) 357, 412, 1077
SduI GDGCHC 2 cut(s) 903, 1076
SfcI CTRYAG 4 cut(s) 32, 285, 331, 598
SfuI TTCGAA 1 cut(s) 877
SinI GGWCC 3 cut(s) 548, 710, 771
SmlI CTYRAG 3 cut(s) 131, 440, 455
SmoI CTYRAG 3 cut(s) 131, 440, 455
SpeI ACTAGT 1 cut(s) 959
Sse9I AATT 5 cut(s) 235, 765, 776, 920, 1145
SsiI CCGC 3 cut(s) 149, 197, 543
SspI AATATT 1 cut(s) 363
SspMI CTAG 6 cut(s) 11, 96, 245, 738, 960, 1152
SstI GAGCTC 1 cut(s) 903
StyD4I CCNGG 3 cut(s) 355, 410, 1075
StyI CCWWGG 3 cut(s) 152, 297, 1179
TaaI ACNGT 2 cut(s) 471, 734
TaqI TCGA 4 cut(s) 221, 266, 792, 877
TasI AATT 5 cut(s) 235, 765, 776, 920, 1145
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 3 cut(s) 239, 456, 750
Tru9I TTAA 3 cut(s) 239, 456, 750
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 3 cut(s) 465, 655, 908
TseI GCWGC 3 cut(s) 28, 31, 333
Tsp45I GTSAC 3 cut(s) 465, 655, 908
TspDTI ATGAA 5 cut(s) 67, 323, 1031, 1157, 1206
TspGWI ACGGA 1 cut(s) 713
TspRI CASTG 1 cut(s) 355
Van91I CCANNNNNTGG 2 cut(s) 167, 978
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 3 cut(s) 548, 710, 771
XapI RAATTY 1 cut(s) 776
XceI RCATGY 1 cut(s) 940
XmnI GAANNNNTTC 1 cut(s) 851
XspI CTAG 6 cut(s) 11, 96, 245, 738, 960, 1152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.