Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001759

Physical Location & Seq

Genomic Coordinates Reverse (-)

57952269 .. 57954657

Gene Structure 2389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20930

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGATTGTTTACAAACTACAAAACTCTTCTAGGATTATAGCTATATATATCGTGACAAAGGCTCCTGTTACTAACTTGCTTAAGGAGCTAAATATGAGCACTCTCTCCAATATTTTCCTGCTTTCTGTTCTCTTGCTTACTATTTTCATTTTCTTTTCAATTTTTAGATCAGGTGAGAAACTAAAATCGCCGCCATCCCCAATAAGGTTACCCATAATCGGAAACCTCCACCAGCTAGGTACACTCCCACATCGTTCTCTTCACACCCTCTCAAAGAAGTATGGCCCTCTAATGTTAATGCACTTGGGCCAATTGCCGACACTAGTAGTTTCATCGACAGACATGGACAAGGAAATAAAGACGATTCATGACAGTTGGAGACAAGTTCGGAAACTCTGTGTTGTTGAACTTCTGAGCCTGAAAAGAGTGCAACAATTTCAGTATGCAAGGGAAGAAGAAGTTGCAGAATTGGTCAAGAAGATACGCAAAGAGTGCCTCAGTGAATCTCCTATTGATCTAAGTGACATGCTGATAAAAACGTCCAACAACATACTATCTAGTTGTGTAATTGGAAAAAGGTTTGTAGAGGAAAATAAGAATTGGTTTGGAGAGGCATCAAGAAGGTTGATGGTTCAACTCATGTCTTTCAGTGTTGGAGATTTCTTCCCTAGTTTGAGATGGATTGACAATCTTAGAGGATTCATTGCACGTTTGAAAGCAACTTCTGCCGAATTAGATGGATTCTTTGATCAGTTGATTGAAGAACAAAAGGCTATAAAGGGAGAATGTGAACTCAAAACAAGAGATTTTGTGGATATACTCCTCAAATACGGAAAGGATGATGCGCTTAACTTGGATCTTACTCAAGATAACTTAAAAGCAATCCTCCAGGACATGTTTATTAGAGGAAGTGATACAACATCAACAACTTTGGAATGGTTAATGGCAGAGCTTGTCAGAAATCCAAATGTGATGGAAAAAGTCCAACAAGAGGTAAGAAGAGTGGAGGGACAAAAGGCAAAATTAGATGTGGATGATATCAATCAAATGGACTACTTAAAATGTGTCATCAAAGAAACTCTAAGACTGCATCCTCCAATTACTCTTGTACATCAGGAAACAACTGGAGCTGTAACGTTGGGAGGTTACTATATCCCCGCGAAAACAAGAGACAAGCCAGAGGAATTCCTTCCGGATCGATTTGAGGACAACTCGATTGACTTCAATGGTCAGGACTTCCAGTTTTTCCCATTTGGTGGTGGGAGAAGAGGGTGTCCTAGACAGGCCTTTGCACTGGCTATAGTTGAATATATGGTTGCCAATCTTCTATTTTGGTTTGATTGGAAGTTGCCTAGTGGTAATGTATCGGTGGAGGCTATAGATATGAGTGAAGTGTATGGACTCGTTGTCTATAAGAAAGCTCCTCTTTGTCTTGTCCCCGTACCATTCTCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00460 ko00590 ko00591 ko00830 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00460 map00590 map00591 map00830 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

485

Amino Acids

55.43

Weight (kDa)

7.57

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	64 - 119	2.8e-07	Cytochrome P450
p450	PF00067	124 - 389	3.5e-53	Cytochrome P450
p450	PF00067	392 - 454	3e-12	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g17450 FvH4_5g06440 FvH4_5g06460
malus_domestica	MD00G1167000.v1.1 MD06G1164400.v1.1 MD06G1164700.v1.1 MD14G1169200.v1.1 MD14G1169600.v1.1 MD14G1169700.v1.1
prunus_persica	Prupe.3G184200_v2.0.a1 Prupe.5G163700_v2.0.a1 Prupe.5G163800_v2.0.a1 Prupe.5G164000_v2.0.a1 Prupe.5G164100_v2.0.a1
pyrus_communis	pycom06g14730 pycom14g14150
rosa_chinensis	RchiOBHm_Chr1g0314001 RchiOBHm_Chr4g0420441 RchiOBHm_Chr5g0028981 RchiOBHm_Chr7g0192271 RchiOBHm_Chr7g0192301 RchiOBHm_Chr7g0233491
rosa_laevigata	RLG00000004378 RLG00000004380 RLG00000007763 RLG00000033133
rosa_multiflora	Rmu_sc0001559.1_g000001 Rmu_sc0009042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00050910 Rroxscaffold_3G00263130
rosa_rugosa	Rorug03G0295500 Rorug05G0112200 Rorug07G0000300 Rorug07G0000400
rosa_samantha	Rh4AG225500 Rh5AG204200 Rh5CG223300 Rh7AG124500 Rh7AG124700 Rh7BG126300 Rh7BG126500 Rh7DG128100 Rh7DG128300
rosa_wichuraiana	Rw0G008520 Rw4G011870 Rw5G018510 Rw7G010670 Rw7G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1256
AccII	CGCG	1 cut(s)	1160
AccIII	TCCGGA	1 cut(s)	1192
AciI	CCGC	2 cut(s)	191, 1158
AclI	AACGTT	1 cut(s)	1136
AclWI	GGATC	2 cut(s)	864, 1203
AcsI	RAATTY	1 cut(s)	1184
AfaI	GTAC	3 cut(s)	241, 1110, 1443
AfiI	CCNNNNNNNGG	4 cut(s)	204, 218, 991, 1256
AflII	CTTAAG	1 cut(s)	80
AflIII	ACRYGT	1 cut(s)	894
AgsI	TTSAA	7 cut(s)	159, 407, 635, 715, 761, 1225, 1307
AhdI	GACNNNNNGTC	1 cut(s)	1406
AhlI	ACTAGT	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	888
AluBI	AGCT	6 cut(s)	41, 88, 235, 952, 1130, 1421
AluI	AGCT	6 cut(s)	41, 88, 235, 952, 1130, 1421
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	2 cut(s)	373, 1164
AlwI	GGATC	2 cut(s)	864, 1203
Aor13HI	TCCGGA	1 cut(s)	1192
AoxI	GGCC	3 cut(s)	283, 307, 1284
ApoI	RAATTY	1 cut(s)	1184
Asp700I	GAANNNNTTC	1 cut(s)	1188
AspLEI	GCGC	1 cut(s)	847
AspS9I	GGNCC	2 cut(s)	284, 307
AsuHPI	GGTGA	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	101
BccI	CCATC	5 cut(s)	202, 622, 672, 731, 967
BciT130I	CCWGG	1 cut(s)	890
BclI	TGATCA	1 cut(s)	748
BcoDI	GTCTC	2 cut(s)	373, 1164
BcuI	ACTAGT	1 cut(s)	322
BfaI	CTAG	7 cut(s)	30, 236, 323, 558, 669, 1278, 1353
BfmI	CTRYAG	2 cut(s)	1299, 1377
BfrI	CTTAAG	1 cut(s)	80
BisI	GCNGC	1 cut(s)	191
BlsI	GCNGC	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	890
BmeRI	GACNNNNNGTC	1 cut(s)	1406
BmgT120I	GGNCC	2 cut(s)	284, 307
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	890
BmsI	GCATC	3 cut(s)	623, 832, 1099
BplI	GAGNNNNNCTC	2 cut(s)	1196, 1228
BpmI	CTGGAG	2 cut(s)	872, 1146
BpuEI	CTTGAG	1 cut(s)	849
Bsa29I	ATCGAT	1 cut(s)	1198
BsaBI	GATNNNNATC	1 cut(s)	1041
BsaWI	WCCGGW	1 cut(s)	1192
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	4 cut(s)	204, 218, 991, 1256
Bse1I	ACTGG	3 cut(s)	1129, 1240, 1299
Bse3DI	GCAATG	1 cut(s)	702
Bse8I	GATNNNNATC	1 cut(s)	1041
BseAI	TCCGGA	1 cut(s)	1192
BseBI	CCWGG	1 cut(s)	890
BseCI	ATCGAT	1 cut(s)	1198
BseGI	GGATG	4 cut(s)	194, 844, 1039, 1090
BseJI	GATNNNNATC	1 cut(s)	1041
BseLI	CCNNNNNNNGG	4 cut(s)	204, 218, 991, 1256
BseMI	GCAATG	1 cut(s)	702
BseMII	CTCAG	2 cut(s)	404, 511
BseNI	ACTGG	3 cut(s)	1129, 1240, 1299
BseRI	GAGGAG	2 cut(s)	812, 1413
Bsh1236I	CGCG	1 cut(s)	1160
BshFI	GGCC	3 cut(s)	285, 309, 1286
BshVI	ATCGAT	1 cut(s)	1198
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	1193
BslFI	GGGAC	2 cut(s)	1023, 1421
BslI	CCNNNNNNNGG	4 cut(s)	204, 218, 991, 1256
BsmAI	GTCTC	2 cut(s)	373, 1164
BsmFI	GGGAC	2 cut(s)	1023, 1421
BsnI	GGCC	3 cut(s)	285, 309, 1286
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp13I	TCCGGA	1 cut(s)	1192
Bsp1407I	TGTACA	1 cut(s)	1108
Bsp143I	GATC	5 cut(s)	167, 514, 748, 856, 1195
BspACI	CCGC	2 cut(s)	191, 1158
BspANI	GGCC	3 cut(s)	285, 309, 1286
BspCNI	CTCAG	2 cut(s)	405, 510
BspDI	ATCGAT	1 cut(s)	1198
BspEI	TCCGGA	1 cut(s)	1192
BspFNI	CGCG	1 cut(s)	1160
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	1 cut(s)	63
BspPI	GGATC	2 cut(s)	864, 1203
BspTI	CTTAAG	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	702
BsrGI	TGTACA	1 cut(s)	1108
BsrI	ACTGG	3 cut(s)	1129, 1240, 1299
BssMI	GATC	5 cut(s)	167, 514, 748, 856, 1195
Bst2UI	CCWGG	1 cut(s)	890
Bst4CI	ACNGT	1 cut(s)	374
Bst6I	CTCTTC	4 cut(s)	31, 264, 994, 1261
BstAFI	CTTAAG	1 cut(s)	80
BstAPI	GCANNNNNTGC	2 cut(s)	492, 725
BstAUI	TGTACA	1 cut(s)	1108
BstDEI	CTNAG	5 cut(s)	413, 497, 518, 692, 1082
BstEII	GGTNACC	1 cut(s)	207
BstF5I	GGATG	4 cut(s)	194, 844, 1039, 1090
BstFNI	CGCG	1 cut(s)	1160
BstHHI	GCGC	1 cut(s)	847
BstKTI	GATC	5 cut(s)	170, 517, 751, 859, 1198
BstMAI	GTCTC	2 cut(s)	373, 1164
BstMBI	GATC	5 cut(s)	167, 514, 748, 856, 1195
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 492, 725
BstNI	CCWGG	1 cut(s)	890
BstNSI	RCATGY	2 cut(s)	529, 898
BstPI	GGTNACC	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	888
BstSFI	CTRYAG	2 cut(s)	1299, 1377
BstUI	CGCG	1 cut(s)	1160
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
Bsu15I	ATCGAT	1 cut(s)	1198
BsuRI	GGCC	3 cut(s)	285, 309, 1286
BsuTUI	ATCGAT	1 cut(s)	1198
BtsCI	GGATG	4 cut(s)	194, 844, 1039, 1090
BtsIMutI	CAGTG	3 cut(s)	505, 655, 1292
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	847
Cfr13I	GGNCC	2 cut(s)	284, 307
ClaI	ATCGAT	1 cut(s)	1198
Csp6I	GTAC	3 cut(s)	240, 1109, 1442
CviAII	CATG	5 cut(s)	343, 368, 526, 640, 895
CviQI	GTAC	3 cut(s)	240, 1109, 1442
DdeI	CTNAG	5 cut(s)	413, 497, 518, 692, 1082
DpnI	GATC	5 cut(s)	169, 516, 750, 858, 1197
DpnII	GATC	5 cut(s)	167, 514, 748, 856, 1195
DriI	GACNNNNNGTC	1 cut(s)	1406
Eam1104I	CTCTTC	4 cut(s)	31, 264, 994, 1261
Eam1105I	GACNNNNNGTC	1 cut(s)	1406
EarI	CTCTTC	4 cut(s)	31, 264, 994, 1261
Eco147I	AGGCCT	1 cut(s)	1286
Eco32I	GATATC	1 cut(s)	1039
Eco91I	GGTNACC	1 cut(s)	207
EcoO65I	GGTNACC	1 cut(s)	207
EcoRI	GAATTC	1 cut(s)	1184
EcoRII	CCWGG	1 cut(s)	888
EcoRV	GATATC	1 cut(s)	1039
FaeI	CATG	5 cut(s)	346, 371, 529, 643, 898
FalI	AAGNNNNNCTT	2 cut(s)	1410, 1442
FaqI	GGGAC	2 cut(s)	1023, 1421
FatI	CATG	5 cut(s)	342, 367, 525, 639, 894
FauI	CCCGC	1 cut(s)	1165
FbaI	TGATCA	1 cut(s)	748
Fnu4HI	GCNGC	1 cut(s)	191
FokI	GGATG	4 cut(s)	181, 851, 1046, 1077
Fsp4HI	GCNGC	1 cut(s)	191
FspBI	CTAG	7 cut(s)	30, 236, 323, 558, 669, 1278, 1353
GlaI	GCGC	1 cut(s)	846
GluI	GCNGC	1 cut(s)	191
GsuI	CTGGAG	2 cut(s)	872, 1146
HaeIII	GGCC	3 cut(s)	285, 309, 1286
HapII	CCGG	1 cut(s)	1193
HhaI	GCGC	1 cut(s)	847
Hin1II	CATG	5 cut(s)	346, 371, 529, 643, 898
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HinfI	GANTC	5 cut(s)	364, 503, 699, 741, 1401
HpaII	CCGG	1 cut(s)	1193
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	3 cut(s)	10, 242, 791
Hpy188I	TCNGA	4 cut(s)	221, 390, 414, 959
Hpy188III	TCNNGA	8 cut(s)	52, 368, 475, 618, 866, 1115, 1193, 1232
Hpy8I	GTNNAC	3 cut(s)	10, 242, 791
HpyAV	CCTTC	2 cut(s)	615, 1199
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	3 cut(s)	539, 709, 1136
HpyCH4V	TGCA	7 cut(s)	301, 430, 446, 464, 707, 1090, 1292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 492, 725
HpyF3I	CTNAG	5 cut(s)	413, 497, 518, 692, 1082
HpySE526I	ACGT	3 cut(s)	539, 709, 1136
Hsp92II	CATG	5 cut(s)	346, 371, 529, 643, 898
HspAI	GCGC	1 cut(s)	845
Kpn2I	TCCGGA	1 cut(s)	1192
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	5 cut(s)	167, 514, 748, 856, 1195
LmnI	GCTCC	4 cut(s)	67, 85, 1127, 1426
LweI	GCATC	3 cut(s)	623, 832, 1099
MaeI	CTAG	7 cut(s)	30, 236, 323, 558, 669, 1278, 1353
MaeII	ACGT	3 cut(s)	539, 709, 1136
MaeIII	GTNAC	6 cut(s)	52, 67, 207, 521, 1132, 1145
MalI	GATC	5 cut(s)	169, 516, 750, 858, 1197
MboI	GATC	5 cut(s)	167, 514, 748, 856, 1195
MfeI	CAATTG	1 cut(s)	311
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	1395
MmeI	TCCRAC	4 cut(s)	356, 567, 634, 1009
MroI	TCCGGA	1 cut(s)	1192
MroXI	GAANNNNTTC	1 cut(s)	1188
MseI	TTAA	6 cut(s)	81, 296, 849, 875, 941, 1058
MspCI	CTTAAG	1 cut(s)	80
MspI	CCGG	1 cut(s)	1193
MspR9I	CCNGG	1 cut(s)	890
MunI	CAATTG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	890
MvnI	CGCG	1 cut(s)	1160
MwoI	GCNNNNNNNGC	3 cut(s)	85, 492, 725
NdeII	GATC	5 cut(s)	167, 514, 748, 856, 1195
NlaIII	CATG	5 cut(s)	346, 371, 529, 643, 898
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	2 cut(s)	52, 521
NspI	RCATGY	2 cut(s)	529, 898
PagI	TCATGA	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	1286
PciI	ACATGT	1 cut(s)	894
PdmI	GAANNNNTTC	1 cut(s)	1188
PfeI	GAWTC	4 cut(s)	364, 503, 699, 741
PflMI	CCANNNNNTGG	1 cut(s)	1256
PfoI	TCCNGGA	1 cut(s)	888
PkrI	GCNGC	1 cut(s)	192
PleI	GAGTC	1 cut(s)	1395
PpsI	GAGTC	1 cut(s)	1395
PscI	ACATGT	1 cut(s)	894
Psp1406I	AACGTT	1 cut(s)	1136
Psp6I	CCWGG	1 cut(s)	888
PspEI	GGTNACC	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	888
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	284, 307
PsuI	RGATCY	1 cut(s)	856
RsaI	GTAC	3 cut(s)	241, 1110, 1443
RsaNI	GTAC	3 cut(s)	240, 1109, 1442
SaqAI	TTAA	6 cut(s)	81, 296, 849, 875, 941, 1058
SatI	GCNGC	1 cut(s)	191
Sau3AI	GATC	5 cut(s)	167, 514, 748, 856, 1195
Sau96I	GGNCC	2 cut(s)	284, 307
SchI	GAGTC	1 cut(s)	1395
ScrFI	CCNGG	1 cut(s)	890
SduI	GDGCHC	1 cut(s)	101
SfaNI	GCATC	3 cut(s)	623, 832, 1099
SfcI	CTRYAG	2 cut(s)	1299, 1377
SmlI	CTYRAG	2 cut(s)	80, 864
SmoI	CTYRAG	2 cut(s)	80, 864
SpeI	ACTAGT	1 cut(s)	322
SseBI	AGGCCT	1 cut(s)	1286
SsiI	CCGC	2 cut(s)	191, 1158
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	7 cut(s)	30, 236, 323, 558, 669, 1278, 1353
StuI	AGGCCT	1 cut(s)	1286
StyD4I	CCNGG	1 cut(s)	888
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	3 cut(s)	542, 712, 1139
TaqI	TCGA	3 cut(s)	335, 1198, 1214
TatI	WGTACW	1 cut(s)	1108
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	4 cut(s)	364, 503, 699, 741
Tru1I	TTAA	6 cut(s)	81, 296, 849, 875, 941, 1058
Tru9I	TTAA	6 cut(s)	81, 296, 849, 875, 941, 1058
TscAI	CASTG	3 cut(s)	505, 655, 1299
TseFI	GTSAC	2 cut(s)	52, 521
Tsp45I	GTSAC	2 cut(s)	52, 521
TspDTI	ATGAA	4 cut(s)	136, 321, 356, 691
TspGWI	ACGGA	1 cut(s)	846
TspRI	CASTG	3 cut(s)	505, 655, 1299
Van91I	CCANNNNNTGG	1 cut(s)	1256
Vha464I	CTTAAG	1 cut(s)	80
XapI	RAATTY	1 cut(s)	1184
XceI	RCATGY	2 cut(s)	529, 898
XmnI	GAANNNNTTC	1 cut(s)	1188
XspI	CTAG	7 cut(s)	30, 236, 323, 558, 669, 1278, 1353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.