Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001759

Physical Location & Seq

Genomic Coordinates Forward (+)

28058513 .. 28060159

Gene Structure 1647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G011870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGGCTCCTGTTACTAACTTGCTTAAGGAGCTAAATATGATCACTCTCTCCAATCTTTTCCTGCTTTCTATTCTCTTACTTACTATTTTCATTTTATTTTCAATTTTTAGATTAGGTGAGAAACTAAAATCGCCGCCATCCCCAACAAGGTTACCCATAATTGGAAACCTCCACCAGCTAAGTACACTTGCACACCGTTCTCTTCACACCCTCTCAAAGAAGTATGGCCCTCTAATGTTATTGCACTTGGGCCAATTTCCGACACTAGTAGTTTCATCGGCAGACATGGCCAGGGAAATAAAGAAGACTCATGACAGTGTTTTATGTGGCCGTCCCCAATCTACAGCTTCAAATATATTATTCTATGGATGCAAAAACCTAGCCTTATCTCCTTATGGAGAGTACTGGAGACAAGTTCGGAAACTCTGTGTTGTTGAACTTCTGAGCCTGAAAAGAGTGCAACAATTTCAGTATGCAAGGGAAGAAGAAGTTGCAGAATTGGTCATGAGGATACGCAAAAAGTGCCTCAGTGAGTCTCCTATTGATCTAAGTGACATGATGGTAAAAACTGCCAACAATATACTGTCTAGGTGTGTTATTGGAAAAAGATTTGGAGGAGAGGAAAATGATGATTGGTTTGGAGAGGCATCAAGAAGGTTGTTGGTTCAACTAATGTCTTTCAGTATCGGAGATTTCTTCCCTAGTTTGAGATGGATTGACAATCTTAGAGGATTCATTGCACATTTGAAAGCAACTTCTGCCGAATTTGATGGATTCTTTGATCAGTTGATTGAACAACACAAGGCTACAAAGGGAGAATGTAAACTCGAAACAAGAGATTTTGTGGATATTCTCCTCAAATATGGAAAGGATTATGCTCTTGACTTGGATCTCACTCAAGATAACTTAAAAGCAATCCTACAGGACATGTTTGTTGCCGGAGGTGATACAACAGCAACAACTATGGAATGGTTAATGGCAGAGCTTGTCAGAAATCCAAATGTGATGGAAAAAGTCCAACAAGAGGTAAGAAGAGTGGTGGGACAAAAGGCAAAAGTAGATGTGGATGATATCAATCAAATGGACTACTTAAAATGTGTGATCAAAGAAACTCTAAGACTACATCCTCCAATTCCTCTTATACCTCAAGAAACAATCAGAGGTGTAACACTGGGGGGTTACTATATCCCTGCAAAAACAAGAGTATTTGTCAATGTATTTGCAATCCAAAGGGACCCCAAGTTCTGGGACAAGCCAGAGGAGTTCCTCCCTGATCGATTTGAGGATAACTCAATTGACTTCAATGGTCAGGACTTCCAATATATGCCATTTGGTGGTGGGAGAAGAGGGTGTCCTGGACAGGCCTTTGCAATGGCTGAAATTGGATATTTGGTTGCCAATCTTCTGTATTGGTTTGATTGGAAGTTGCCTGGTGGTACTGTATCGCCTGAGACAGTAGACATGAGTGAACTTTATGGAGCAGTTGTCTATAAGAAAAGTCATATTCGTCTTGTCCCCGTACCATTCTCCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00460 ko00590 ko00591 ko00830 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00460 map00590 map00591 map00830 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

511

Amino Acids

58.19

Weight (kDa)

8.0

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	45 - 484	2.3e-107	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g17450 FvH4_5g06440 FvH4_5g06460
malus_domestica	MD00G1167000.v1.1 MD06G1164400.v1.1 MD06G1164700.v1.1 MD14G1169200.v1.1 MD14G1169600.v1.1 MD14G1169700.v1.1
prunus_persica	Prupe.3G184200_v2.0.a1 Prupe.5G163700_v2.0.a1 Prupe.5G163800_v2.0.a1 Prupe.5G164000_v2.0.a1 Prupe.5G164100_v2.0.a1
pyrus_communis	pycom06g14730 pycom14g14150
rosa_chinensis	RchiOBHm_Chr1g0314001 RchiOBHm_Chr4g0420441 RchiOBHm_Chr5g0028981 RchiOBHm_Chr7g0192271 RchiOBHm_Chr7g0192301 RchiOBHm_Chr7g0233491
rosa_laevigata	RLG00000004378 RLG00000004380 RLG00000007763 RLG00000033133
rosa_multiflora	Rmu_sc0001559.1_g000001 Rmu_sc0009042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00050910 Rroxscaffold_3G00263130
rosa_rugosa	Rorug03G0295500 Rorug05G0112200 Rorug07G0000300 Rorug07G0000400
rosa_samantha	Rh4AG225500 Rh5AG204200 Rh5CG223300 Rh7AG124500 Rh7AG124700 Rh7BG126300 Rh7BG126500 Rh7DG128100 Rh7DG128300
rosa_wichuraiana	Rw0G008520 Rw4G011870 Rw5G018510 Rw7G010670 Rw7G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1245, 1334
AccI	GTMKAC	1 cut(s)	1458
AciI	CCGC	1 cut(s)	134
AclWI	GGATC	1 cut(s)	897
AcoI	YGGCCR	2 cut(s)	288, 328
AcsI	RAATTY	1 cut(s)	764
AfaI	GTAC	4 cut(s)	184, 404, 1438, 1521
AfiI	CCNNNNNNNGG	5 cut(s)	147, 161, 1024, 1245, 1334
AflII	CTTAAG	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	927
AgsI	TTSAA	7 cut(s)	102, 351, 437, 668, 748, 794, 1303
AhlI	ACTAGT	1 cut(s)	265
AjnI	CCWGG	3 cut(s)	290, 1354, 1429
AloI	GAACNNNNNNTCC	2 cut(s)	1226, 1258
AluBI	AGCT	4 cut(s)	31, 178, 347, 985
AluI	AGCT	4 cut(s)	31, 178, 347, 985
Alw26I	GTCTC	3 cut(s)	403, 540, 1445
AlwI	GGATC	1 cut(s)	897
AoxI	GGCC	5 cut(s)	226, 250, 288, 328, 1362
ApoI	RAATTY	1 cut(s)	764
AspS9I	GGNCC	3 cut(s)	227, 250, 1234
AsuHPI	GGTGA	2 cut(s)	128, 956
AvaII	GGWCC	1 cut(s)	1234
BalI	TGGCCA	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	311
BccI	CCATC	5 cut(s)	145, 553, 705, 764, 1000
BceAI	ACGGC	1 cut(s)	315
BciT130I	CCWGG	3 cut(s)	292, 1356, 1431
BciVI	GTATCC	1 cut(s)	504
BclI	TGATCA	3 cut(s)	39, 781, 1101
BcoDI	GTCTC	3 cut(s)	403, 540, 1445
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	4 cut(s)	266, 380, 588, 702
BfmI	CTRYAG	2 cut(s)	342, 920
BfrI	CTTAAG	1 cut(s)	23
BfuI	GTATCC	1 cut(s)	504
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
BmcAI	AGTACT	1 cut(s)	404
Bme1390I	CCNGG	3 cut(s)	292, 1356, 1431
Bme18I	GGWCC	1 cut(s)	1234
BmgT120I	GGNCC	3 cut(s)	227, 250, 1234
BmiI	GGNNCC	3 cut(s)	6, 1235, 1236
BmrFI	CCNGG	3 cut(s)	292, 1356, 1431
BmrI	ACTGGG	1 cut(s)	1181
BmsI	GCATC	2 cut(s)	359, 656
BmuI	ACTGGG	1 cut(s)	1181
BpiI	GAAGAC	1 cut(s)	311
BplI	GAGNNNNNCTC	2 cut(s)	1274, 1306
BpmI	CTGGAG	1 cut(s)	427
BpuEI	CTTGAG	2 cut(s)	882, 1131
Bsa29I	ATCGAT	1 cut(s)	1276
BsaBI	GATNNNNATC	1 cut(s)	1074
BsaJI	CCNNGG	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	1470, 1500
Bsc4I	CCNNNNNNNGG	5 cut(s)	147, 161, 1024, 1245, 1334
Bse1I	ACTGG	2 cut(s)	410, 1176
Bse3DI	GCAATG	2 cut(s)	735, 1377
Bse8I	GATNNNNATC	1 cut(s)	1074
BseBI	CCWGG	3 cut(s)	292, 1356, 1431
BseCI	ATCGAT	1 cut(s)	1276
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	4 cut(s)	137, 374, 1072, 1123
BseJI	GATNNNNATC	1 cut(s)	1074
BseLI	CCNNNNNNNGG	5 cut(s)	147, 161, 1024, 1245, 1334
BseMI	GCAATG	2 cut(s)	735, 1377
BseMII	CTCAG	3 cut(s)	434, 541, 1440
BseNI	ACTGG	2 cut(s)	410, 1176
BseRI	GAGGAG	3 cut(s)	630, 845, 1274
BshFI	GGCC	5 cut(s)	228, 252, 290, 330, 1364
BshVI	ATCGAT	1 cut(s)	1276
BsiSI	CCGG	1 cut(s)	939
BslFI	GGGAC	5 cut(s)	318, 1056, 1247, 1262, 1499
BslI	CCNNNNNNNGG	5 cut(s)	147, 161, 1024, 1245, 1334
BsmAI	GTCTC	3 cut(s)	403, 540, 1445
BsmFI	GGGAC	5 cut(s)	318, 1056, 1247, 1262, 1499
BsnI	GGCC	5 cut(s)	228, 252, 290, 330, 1364
Bsp143I	GATC	6 cut(s)	39, 544, 781, 889, 1101, 1273
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	5 cut(s)	228, 252, 290, 330, 1364
BspCNI	CTCAG	3 cut(s)	435, 540, 1441
BspDI	ATCGAT	1 cut(s)	1276
BspHI	TCATGA	2 cut(s)	310, 504
BspLI	GGNNCC	3 cut(s)	6, 1235, 1236
BspPI	GGATC	1 cut(s)	897
BspTI	CTTAAG	1 cut(s)	23
BsrDI	GCAATG	2 cut(s)	735, 1377
BsrI	ACTGG	2 cut(s)	410, 1176
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	6 cut(s)	39, 544, 781, 889, 1101, 1273
Bst2UI	CCWGG	3 cut(s)	292, 1356, 1431
Bst4CI	ACNGT	5 cut(s)	197, 317, 585, 1441, 1456
Bst6I	CTCTTC	3 cut(s)	207, 1027, 1339
BstAFI	CTTAAG	1 cut(s)	23
BstAPI	GCANNNNNTGC	2 cut(s)	522, 758
BstDEI	CTNAG	7 cut(s)	179, 443, 527, 548, 725, 1115, 1449
BstEII	GGTNACC	1 cut(s)	150
BstF5I	GGATG	4 cut(s)	137, 374, 1072, 1123
BstKTI	GATC	6 cut(s)	42, 547, 784, 892, 1104, 1276
BstMAI	GTCTC	3 cut(s)	403, 540, 1445
BstMBI	GATC	6 cut(s)	39, 544, 781, 889, 1101, 1273
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 287, 522, 758
BstNI	CCWGG	3 cut(s)	292, 1356, 1431
BstNSI	RCATGY	1 cut(s)	931
BstPI	GGTNACC	1 cut(s)	150
BstSCI	CCNGG	3 cut(s)	290, 1354, 1429
BstSFI	CTRYAG	2 cut(s)	342, 920
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	889
BstYI	RGATCY	1 cut(s)	889
Bsu15I	ATCGAT	1 cut(s)	1276
BsuI	GTATCC	1 cut(s)	504
BsuRI	GGCC	5 cut(s)	228, 252, 290, 330, 1364
BsuTUI	ATCGAT	1 cut(s)	1276
BtsCI	GGATG	4 cut(s)	137, 374, 1072, 1123
BtsIMutI	CAGTG	3 cut(s)	322, 535, 1169
CciI	TCATGA	2 cut(s)	310, 504
Cfr13I	GGNCC	3 cut(s)	227, 250, 1234
ClaI	ATCGAT	1 cut(s)	1276
Csp6I	GTAC	4 cut(s)	183, 403, 1437, 1520
CviAII	CATG	6 cut(s)	286, 311, 505, 556, 928, 1462
CviQI	GTAC	4 cut(s)	183, 403, 1437, 1520
DdeI	CTNAG	7 cut(s)	179, 443, 527, 548, 725, 1115, 1449
DpnI	GATC	6 cut(s)	41, 546, 783, 891, 1103, 1275
DpnII	GATC	6 cut(s)	39, 544, 781, 889, 1101, 1273
EaeI	YGGCCR	2 cut(s)	288, 328
Eam1104I	CTCTTC	3 cut(s)	207, 1027, 1339
EarI	CTCTTC	3 cut(s)	207, 1027, 1339
Eco147I	AGGCCT	1 cut(s)	1364
Eco32I	GATATC	1 cut(s)	1072
Eco47I	GGWCC	1 cut(s)	1234
Eco91I	GGTNACC	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	1234
EcoO65I	GGTNACC	1 cut(s)	150
EcoRII	CCWGG	3 cut(s)	290, 1354, 1429
EcoRV	GATATC	1 cut(s)	1072
FaeI	CATG	6 cut(s)	289, 314, 508, 559, 931, 1465
FaqI	GGGAC	5 cut(s)	318, 1056, 1247, 1262, 1499
FatI	CATG	6 cut(s)	285, 310, 504, 555, 927, 1461
FbaI	TGATCA	3 cut(s)	39, 781, 1101
FblI	GTMKAC	1 cut(s)	1458
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	4 cut(s)	124, 381, 1079, 1110
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	4 cut(s)	266, 380, 588, 702
GluI	GCNGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	427
HaeIII	GGCC	5 cut(s)	228, 252, 290, 330, 1364
HapII	CCGG	1 cut(s)	939
Hin1II	CATG	6 cut(s)	289, 314, 508, 559, 931, 1465
HinfI	GANTC	4 cut(s)	307, 533, 732, 774
HpaII	CCGG	1 cut(s)	939
HphI	GGTGA	2 cut(s)	128, 956
Hpy166II	GTNNAC	4 cut(s)	185, 824, 1459, 1469
Hpy188I	TCNGA	6 cut(s)	261, 420, 444, 689, 992, 1160
Hpy188III	TCNNGA	7 cut(s)	311, 505, 651, 881, 899, 1148, 1310
Hpy8I	GTNNAC	4 cut(s)	185, 824, 1459, 1469
HpyAV	CCTTC	1 cut(s)	648
HpyCH4III	ACNGT	5 cut(s)	197, 317, 585, 1441, 1456
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 287, 522, 758
HpyF3I	CTNAG	7 cut(s)	179, 443, 527, 548, 725, 1115, 1449
Hsp92II	CATG	6 cut(s)	289, 314, 508, 559, 931, 1465
KflI	GGGWCCC	1 cut(s)	1234
Ksp22I	TGATCA	3 cut(s)	39, 781, 1101
Kzo9I	GATC	6 cut(s)	39, 544, 781, 889, 1101, 1273
LmnI	GCTCC	3 cut(s)	10, 28, 1478
LweI	GCATC	2 cut(s)	359, 656
MaeI	CTAG	4 cut(s)	266, 380, 588, 702
MaeIII	GTNAC	5 cut(s)	10, 150, 551, 1165, 1178
MalI	GATC	6 cut(s)	41, 546, 783, 891, 1103, 1275
MboI	GATC	6 cut(s)	39, 544, 781, 889, 1101, 1273
MboII	GAAGA	8 cut(s)	194, 316, 494, 497, 688, 1044, 1356, 1394
MfeI	CAATTG	1 cut(s)	1293
MflI	RGATCY	1 cut(s)	889
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	9 cut(s)	102, 159, 254, 464, 497, 764, 1131, 1293, 1380
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	2 cut(s)	301, 542
MmeI	TCCRAC	2 cut(s)	284, 1042
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	4 cut(s)	24, 908, 974, 1091
MslI	CAYNNNNRTG	1 cut(s)	315
Msp20I	TGGCCA	1 cut(s)	290
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	1 cut(s)	939
MspR9I	CCNGG	3 cut(s)	292, 1356, 1431
MunI	CAATTG	1 cut(s)	1293
MvaI	CCWGG	3 cut(s)	292, 1356, 1431
MwoI	GCNNNNNNNGC	4 cut(s)	28, 287, 522, 758
NdeII	GATC	6 cut(s)	39, 544, 781, 889, 1101, 1273
NlaIII	CATG	6 cut(s)	289, 314, 508, 559, 931, 1465
NlaIV	GGNNCC	3 cut(s)	6, 1235, 1236
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	1 cut(s)	931
PagI	TCATGA	2 cut(s)	310, 504
PceI	AGGCCT	1 cut(s)	1364
PciI	ACATGT	1 cut(s)	927
PfeI	GAWTC	2 cut(s)	732, 774
PflMI	CCANNNNNTGG	2 cut(s)	1245, 1334
PfoI	TCCNGGA	1 cut(s)	1354
PkrI	GCNGC	1 cut(s)	135
PleI	GAGTC	2 cut(s)	301, 541
PpsI	GAGTC	2 cut(s)	301, 541
PpuMI	RGGWCCY	1 cut(s)	1234
PscI	ACATGT	1 cut(s)	927
Psp5II	RGGWCCY	1 cut(s)	1234
Psp6I	CCWGG	3 cut(s)	290, 1354, 1429
PspEI	GGTNACC	1 cut(s)	150
PspGI	CCWGG	3 cut(s)	290, 1354, 1429
PspN4I	GGNNCC	3 cut(s)	6, 1235, 1236
PspPI	GGNCC	3 cut(s)	227, 250, 1234
PspPPI	RGGWCCY	1 cut(s)	1234
PsuI	RGATCY	1 cut(s)	889
RsaI	GTAC	4 cut(s)	184, 404, 1438, 1521
RsaNI	GTAC	4 cut(s)	183, 403, 1437, 1520
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	4 cut(s)	24, 908, 974, 1091
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	6 cut(s)	39, 544, 781, 889, 1101, 1273
Sau96I	GGNCC	3 cut(s)	227, 250, 1234
ScaI	AGTACT	1 cut(s)	404
SchI	GAGTC	2 cut(s)	301, 542
ScrFI	CCNGG	3 cut(s)	292, 1356, 1431
SfaNI	GCATC	2 cut(s)	359, 656
SfcI	CTRYAG	2 cut(s)	342, 920
SinI	GGWCC	1 cut(s)	1234
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	3 cut(s)	23, 897, 1146
SmoI	CTYRAG	3 cut(s)	23, 897, 1146
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	9 cut(s)	102, 159, 254, 464, 497, 764, 1131, 1293, 1380
SseBI	AGGCCT	1 cut(s)	1364
SsiI	CCGC	1 cut(s)	134
SspMI	CTAG	4 cut(s)	266, 380, 588, 702
StuI	AGGCCT	1 cut(s)	1364
StyD4I	CCNGG	3 cut(s)	290, 1354, 1429
TaaI	ACNGT	5 cut(s)	197, 317, 585, 1441, 1456
TaqI	TCGA	2 cut(s)	828, 1276
TasI	AATT	9 cut(s)	102, 159, 254, 464, 497, 764, 1131, 1293, 1380
TatI	WGTACW	2 cut(s)	182, 402
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	2 cut(s)	732, 774
Tru1I	TTAA	4 cut(s)	24, 908, 974, 1091
Tru9I	TTAA	4 cut(s)	24, 908, 974, 1091
TscAI	CASTG	3 cut(s)	322, 535, 1176
TseFI	GTSAC	1 cut(s)	551
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	79, 264, 724
TspRI	CASTG	3 cut(s)	322, 535, 1176
Van91I	CCANNNNNTGG	2 cut(s)	1245, 1334
Vha464I	CTTAAG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	1234
XapI	RAATTY	1 cut(s)	764
XceI	RCATGY	1 cut(s)	931
XmiI	GTMKAC	1 cut(s)	1458
XspI	CTAG	4 cut(s)	266, 380, 588, 702
ZrmI	AGTACT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.