Rh4AG225500

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
52617248 .. 52620204
2957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG225500.1

Sequence Viewer

Length: 1533 bp
ATGGCTCCTGTTACTAACTTCCTTAATGAGCTAAATATGAGCACTCTCTCCAATCTTTTCCTGCTTTCTGTTCTCTTGCTTACTATTTTCAATTTTTTTTCAATTTTAAGATCAGGTGAGAAACTAAAATCGCCGCCATCCCCAACAAGGTTACCCATAATCGGAAACCTCCACCAGCTAGGCACACTCCCACACCGTTCTCTTCACACTCTCTCAAAGAAGTATGGCCCTCTAATGTTATTGCACTTGGGCCAATTTCCGACACTAGTAGTTTCATCAGCAGACATGGCCAAGGAAATAAAGAAGACTCATGACAGTGTTTGCTGTAACCGTCCCCAATTTACAGCTACAAATATATTACTTTATGGATGCAAAGACCTAGCGTTTTCTCCTTATGGAGAGTACTGGAGACAAGTTCGGAAACTCTGTGTTGTTGAACTTCTGAGCCTGAAAAAAGTGCAACAATTTCAGAATGCAAGGGAAGAAGAAGTTGCAAAATTGGTCAAGAAGATACGCAAAGAATGCCACAGTGAGTCTCCTATTGATCTAAGTGACATGCTGAAAAAAACGTCCAACAACATACTGTCTAGTTGTGTTATTGGAAAAAGGTTTGTAGAGGAAAATGATAATTGGTTTGGAGAGGCATCAAGAAGGTTGATGGTTCAACTAATGTCTTTCAGTGTTGGAGATTTCTTCCCTAGTTTGAGATGGATTGACAATCTTAGAGGATTCATTGCACGTTTGAAAGCAACTTCTGCCGAATTAGATGGATTCTTTGATAAGTTGATTGAAGAACACAAGGCTATAAAGAGAGAATGTGAACTCAAAACAAGAGATTTTGTGGATATACTCCTCAAATACGGAAAGAATGATGCGCTGAACTTGGATCTCACTCAAGATAACTTAAAAGCAATCATACAGGACATGTTTATTGGAGGAAGTGATACAACATCAACGACTTTGGAATGGTTAATGGCAGAGCTTGTCAGAAATCCAAATGTGATGGAAAAAGTCCAACAAGAGGTAAGAAGAGTGGTGGGACAAAAGGCAAAAGTAGATGTGGATGATATCAATCAAATGGACTACTTAAAATGTGTCATCAAAGAAACTCTAAGATTACATCCCCCAACTACTCTTATACATCGGGAAACAACCAGAGCTGTAACATTGGGAGGTTACTATATCCCCGCGAAAACAAGAGTACTTGTCAATACATTTGCAATCCAAAGGGACCCCACGTTCTGGGACAAGCCAGAGGAATTCCTCCCGGATAGATTTGAGGACAACTTGATTCACTTCAATGGTCAGGACTTCCAATTTGTCCCATTTGGTGGTGGGAGAAGAGGGTGTCCCGGACAGGCCTTTGCTCTGGCCGCAGCTGAATATATGGTTGCCAATCTTTTGTATTGGTTTGATTGGAAGTTGCCTAGTGGTAATGTATCAGTCGAGGCCGTAGACATGAGTGAAGTGTATGGACTCGTTGTCTATAAGAAAGCTCATCTTCGTCTTGTCCCCATACCATTCTCCACTTGA

Protein Analysis

510

Amino Acids

58.19

Weight (kDa)

8.67

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 45 - 479 4.6e-108 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1242, 1331
AccI GTMKAC 1 cut(s) 1455
AccII CGCG 1 cut(s) 1190
AciI CCGC 3 cut(s) 134, 1188, 1374
AclWI GGATC 1 cut(s) 894
AcoI YGGCCR 2 cut(s) 288, 1371
AcsI RAATTY 1 cut(s) 1259
AfaI GTAC 2 cut(s) 404, 1203
AfiI CCNNNNNNNGG 5 cut(s) 147, 161, 1021, 1242, 1331
AflIII ACRYGT 1 cut(s) 924
AgsI TTSAA 7 cut(s) 91, 102, 437, 665, 745, 791, 1300
AhdI GACNNNNNGTC 1 cut(s) 1481
AhlI ACTAGT 1 cut(s) 265
AloI GAACNNNNNNTCC 2 cut(s) 1223, 1255
AluBI AGCT 7 cut(s) 31, 178, 347, 982, 1160, 1379, 1496
AluI AGCT 7 cut(s) 31, 178, 347, 982, 1160, 1379, 1496
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 2 cut(s) 403, 540
AlwI GGATC 1 cut(s) 894
AoxI GGCC 6 cut(s) 226, 250, 288, 1359, 1371, 1449
ApeKI GCWGC 1 cut(s) 1376
ApoI RAATTY 1 cut(s) 1259
ArsI GACNNNNNNTTYG 2 cut(s) 1301, 1333
AspLEI GCGC 1 cut(s) 877
AspS9I GGNCC 3 cut(s) 227, 250, 1231
AsuC2I CCSGG 2 cut(s) 1268, 1353
AsuHPI GGTGA 1 cut(s) 128
AvaII GGWCC 1 cut(s) 1231
BalI TGGCCA 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 1388
BccI CCATC 5 cut(s) 145, 652, 702, 761, 997
BceAI ACGGC 1 cut(s) 1436
BcnI CCSGG 2 cut(s) 1268, 1353
BcoDI GTCTC 2 cut(s) 403, 540
BcuI ACTAGT 1 cut(s) 265
BfaI CTAG 6 cut(s) 179, 266, 380, 588, 699, 1428
BisI GCNGC 3 cut(s) 134, 1374, 1377
BlsI GCNGC 3 cut(s) 135, 1375, 1378
BmcAI AGTACT 2 cut(s) 404, 1203
Bme1390I CCNGG 2 cut(s) 1268, 1353
Bme18I GGWCC 1 cut(s) 1231
BmeRI GACNNNNNGTC 1 cut(s) 1481
BmgT120I GGNCC 3 cut(s) 227, 250, 1231
BmiI GGNNCC 3 cut(s) 6, 1232, 1233
BmrFI CCNGG 2 cut(s) 1268, 1353
BmsI GCATC 3 cut(s) 359, 653, 862
BpiI GAAGAC 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 427
BpuEI CTTGAG 1 cut(s) 879
BpuMI CCSGG 2 cut(s) 1268, 1353
BsaBI GATNNNNATC 1 cut(s) 1071
BsaJI CCNNGG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 5 cut(s) 147, 161, 1021, 1242, 1331
Bse1I ACTGG 1 cut(s) 410
Bse3DI GCAATG 1 cut(s) 732
Bse8I GATNNNNATC 1 cut(s) 1071
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 4 cut(s) 137, 374, 1069, 1120
BseJI GATNNNNATC 1 cut(s) 1071
BseLI CCNNNNNNNGG 5 cut(s) 147, 161, 1021, 1242, 1331
BseMI GCAATG 1 cut(s) 732
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 1 cut(s) 410
BseRI GAGGAG 1 cut(s) 842
BseXI GCAGC 1 cut(s) 1388
Bsh1236I CGCG 1 cut(s) 1190
BshFI GGCC 6 cut(s) 228, 252, 290, 1361, 1373, 1451
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 2 cut(s) 1268, 1353
BslFI GGGAC 7 cut(s) 318, 1053, 1244, 1259, 1307, 1335, 1496
BslI CCNNNNNNNGG 5 cut(s) 147, 161, 1021, 1242, 1331
BsmAI GTCTC 2 cut(s) 403, 540
BsmFI GGGAC 7 cut(s) 318, 1053, 1244, 1259, 1307, 1335, 1496
BsmI GAATGC 2 cut(s) 478, 527
BsnI GGCC 6 cut(s) 228, 252, 290, 1361, 1373, 1451
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 3 cut(s) 110, 544, 886
BspACI CCGC 3 cut(s) 134, 1188, 1374
BspANI GGCC 6 cut(s) 228, 252, 290, 1361, 1373, 1451
BspCNI CTCAG 1 cut(s) 435
BspFNI CGCG 1 cut(s) 1190
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 3 cut(s) 6, 1232, 1233
BspPI GGATC 1 cut(s) 894
BsrDI GCAATG 1 cut(s) 732
BsrI ACTGG 1 cut(s) 410
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 3 cut(s) 110, 544, 886
BssT1I CCWWGG 1 cut(s) 291
Bst4CI ACNGT 5 cut(s) 197, 317, 332, 530, 585
Bst6I CTCTTC 3 cut(s) 207, 1024, 1336
BstAPI GCANNNNNTGC 2 cut(s) 522, 755
BstDEI CTNAG 4 cut(s) 443, 548, 722, 1112
BstEII GGTNACC 1 cut(s) 150
BstF5I GGATG 4 cut(s) 137, 374, 1069, 1120
BstFNI CGCG 1 cut(s) 1190
BstHHI GCGC 1 cut(s) 877
BstKTI GATC 3 cut(s) 113, 547, 889
BstMAI GTCTC 2 cut(s) 403, 540
BstMBI GATC 3 cut(s) 110, 544, 886
BstMWI GCNNNNNNNGC 4 cut(s) 287, 522, 755, 1373
BstNSI RCATGY 2 cut(s) 559, 928
BstPI GGTNACC 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 1266, 1351
BstUI CGCG 1 cut(s) 1190
BstV1I GCAGC 1 cut(s) 1388
BstV2I GAAGAC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 886
BstYI RGATCY 1 cut(s) 886
BsuRI GGCC 6 cut(s) 228, 252, 290, 1361, 1373, 1451
BtsCI GGATG 4 cut(s) 137, 374, 1069, 1120
BtsIMutI CAGTG 3 cut(s) 322, 535, 685
CciI TCATGA 1 cut(s) 310
CfoI GCGC 1 cut(s) 877
Cfr13I GGNCC 3 cut(s) 227, 250, 1231
Csp6I GTAC 2 cut(s) 403, 1202
CviAII CATG 5 cut(s) 286, 311, 556, 925, 1459
CviQI GTAC 2 cut(s) 403, 1202
DdeI CTNAG 4 cut(s) 443, 548, 722, 1112
DpnI GATC 3 cut(s) 112, 546, 888
DpnII GATC 3 cut(s) 110, 544, 886
DriI GACNNNNNGTC 1 cut(s) 1481
EaeI YGGCCR 2 cut(s) 288, 1371
Eam1104I CTCTTC 3 cut(s) 207, 1024, 1336
Eam1105I GACNNNNNGTC 1 cut(s) 1481
EarI CTCTTC 3 cut(s) 207, 1024, 1336
Eco130I CCWWGG 1 cut(s) 291
Eco147I AGGCCT 1 cut(s) 1361
Eco32I GATATC 1 cut(s) 1069
Eco47I GGWCC 1 cut(s) 1231
Eco91I GGTNACC 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 1231
EcoO65I GGTNACC 1 cut(s) 150
EcoRI GAATTC 1 cut(s) 1259
EcoRV GATATC 1 cut(s) 1069
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 5 cut(s) 289, 314, 559, 928, 1462
FalI AAGNNNNNCTT 2 cut(s) 1485, 1517
FaqI GGGAC 7 cut(s) 318, 1053, 1244, 1259, 1307, 1335, 1496
FatI CATG 5 cut(s) 285, 310, 555, 924, 1458
FauI CCCGC 1 cut(s) 1195
FblI GTMKAC 1 cut(s) 1455
Fnu4HI GCNGC 3 cut(s) 134, 1374, 1377
FokI GGATG 4 cut(s) 124, 381, 1076, 1107
Fsp4HI GCNGC 3 cut(s) 134, 1374, 1377
FspBI CTAG 6 cut(s) 179, 266, 380, 588, 699, 1428
GlaI GCGC 1 cut(s) 876
GluI GCNGC 3 cut(s) 134, 1374, 1377
GsuI CTGGAG 1 cut(s) 427
HaeIII GGCC 6 cut(s) 228, 252, 290, 1361, 1373, 1451
HapII CCGG 2 cut(s) 1268, 1353
HhaI GCGC 1 cut(s) 877
Hin1II CATG 5 cut(s) 289, 314, 559, 928, 1462
Hin6I GCGC 1 cut(s) 875
HinP1I GCGC 1 cut(s) 875
HinfI GANTC 6 cut(s) 307, 533, 729, 771, 1291, 1476
HpaII CCGG 2 cut(s) 1268, 1353
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 821, 1456
Hpy188I TCNGA 6 cut(s) 164, 261, 420, 444, 471, 989
Hpy188III TCNNGA 6 cut(s) 311, 505, 648, 896, 1145, 1307
Hpy8I GTNNAC 2 cut(s) 821, 1456
HpyAV CCTTC 1 cut(s) 645
HpyCH4III ACNGT 5 cut(s) 197, 317, 332, 530, 585
HpyCH4IV ACGT 3 cut(s) 569, 739, 1238
HpyCH4V TGCA 7 cut(s) 244, 372, 460, 476, 494, 737, 1220
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 522, 755, 1373
HpyF3I CTNAG 4 cut(s) 443, 548, 722, 1112
HpySE526I ACGT 3 cut(s) 569, 739, 1238
Hsp92II CATG 5 cut(s) 289, 314, 559, 928, 1462
HspAI GCGC 1 cut(s) 875
KflI GGGWCCC 1 cut(s) 1231
Kzo9I GATC 3 cut(s) 110, 544, 886
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 1 cut(s) 1388
LweI GCATC 3 cut(s) 359, 653, 862
MaeI CTAG 6 cut(s) 179, 266, 380, 588, 699, 1428
MaeII ACGT 3 cut(s) 569, 739, 1238
MaeIII GTNAC 6 cut(s) 10, 150, 326, 551, 1162, 1175
MalI GATC 3 cut(s) 112, 546, 888
MboI GATC 3 cut(s) 110, 544, 886
MflI RGATCY 1 cut(s) 886
MhlI GDGCHC 1 cut(s) 44
MlsI TGGCCA 1 cut(s) 290
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 3 cut(s) 301, 542, 1470
MmeI TCCRAC 4 cut(s) 284, 597, 664, 1039
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
MseI TTAA 5 cut(s) 24, 107, 905, 971, 1088
MslI CAYNNNNRTG 2 cut(s) 315, 1299
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 1379
MspI CCGG 2 cut(s) 1268, 1353
MspR9I CCNGG 2 cut(s) 1268, 1353
Mva1269I GAATGC 2 cut(s) 478, 527
MvnI CGCG 1 cut(s) 1190
MwoI GCNNNNNNNGC 4 cut(s) 287, 522, 755, 1373
NciI CCSGG 2 cut(s) 1268, 1353
NdeII GATC 3 cut(s) 110, 544, 886
NlaIII CATG 5 cut(s) 289, 314, 559, 928, 1462
NlaIV GGNNCC 3 cut(s) 6, 1232, 1233
NmuCI GTSAC 1 cut(s) 551
NspI RCATGY 2 cut(s) 559, 928
PagI TCATGA 1 cut(s) 310
PceI AGGCCT 1 cut(s) 1361
PciI ACATGT 1 cut(s) 924
PctI GAATGC 2 cut(s) 478, 527
PfeI GAWTC 3 cut(s) 729, 771, 1291
PflMI CCANNNNNTGG 2 cut(s) 1242, 1331
PfoI TCCNGGA 2 cut(s) 1266, 1351
PkrI GCNGC 3 cut(s) 135, 1375, 1378
PleI GAGTC 3 cut(s) 301, 541, 1470
PpsI GAGTC 3 cut(s) 301, 541, 1470
PpuMI RGGWCCY 1 cut(s) 1231
PscI ACATGT 1 cut(s) 924
Psp5II RGGWCCY 1 cut(s) 1231
PspEI GGTNACC 1 cut(s) 150
PspN4I GGNNCC 3 cut(s) 6, 1232, 1233
PspPI GGNCC 3 cut(s) 227, 250, 1231
PspPPI RGGWCCY 1 cut(s) 1231
PsuI RGATCY 1 cut(s) 886
PvuII CAGCTG 1 cut(s) 1379
RsaI GTAC 2 cut(s) 404, 1203
RsaNI GTAC 2 cut(s) 403, 1202
RseI CAYNNNNRTG 2 cut(s) 315, 1299
SaqAI TTAA 5 cut(s) 24, 107, 905, 971, 1088
SatI GCNGC 3 cut(s) 134, 1374, 1377
Sau3AI GATC 3 cut(s) 110, 544, 886
Sau96I GGNCC 3 cut(s) 227, 250, 1231
ScaI AGTACT 2 cut(s) 404, 1203
SchI GAGTC 3 cut(s) 301, 542, 1470
ScrFI CCNGG 2 cut(s) 1268, 1353
SduI GDGCHC 1 cut(s) 44
SfaNI GCATC 3 cut(s) 359, 653, 862
SinI GGWCC 1 cut(s) 1231
SmiMI CAYNNNNRTG 2 cut(s) 315, 1299
SmlI CTYRAG 1 cut(s) 894
SmoI CTYRAG 1 cut(s) 894
SpeI ACTAGT 1 cut(s) 265
SseBI AGGCCT 1 cut(s) 1361
SsiI CCGC 3 cut(s) 134, 1188, 1374
SspMI CTAG 6 cut(s) 179, 266, 380, 588, 699, 1428
StuI AGGCCT 1 cut(s) 1361
StyD4I CCNGG 2 cut(s) 1266, 1351
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 5 cut(s) 197, 317, 332, 530, 585
TaiI ACGT 3 cut(s) 572, 742, 1241
TaqI TCGA 1 cut(s) 1446
TatI WGTACW 2 cut(s) 402, 1201
TauI GCSGC 2 cut(s) 136, 1376
TfiI GAWTC 3 cut(s) 729, 771, 1291
Tru1I TTAA 5 cut(s) 24, 107, 905, 971, 1088
Tru9I TTAA 5 cut(s) 24, 107, 905, 971, 1088
TscAI CASTG 3 cut(s) 322, 535, 685
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 1 cut(s) 1376
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 2 cut(s) 264, 721
TspGWI ACGGA 1 cut(s) 876
TspRI CASTG 3 cut(s) 322, 535, 685
Van91I CCANNNNNTGG 2 cut(s) 1242, 1331
VpaK11BI GGWCC 1 cut(s) 1231
XapI RAATTY 1 cut(s) 1259
XceI RCATGY 2 cut(s) 559, 928
XmiI GTMKAC 1 cut(s) 1455
XspI CTAG 6 cut(s) 179, 266, 380, 588, 699, 1428
ZrmI AGTACT 2 cut(s) 404, 1203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.