Rw0G008520

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00323
Physical Location & Seq
Forward (+)
44774 .. 47096
2323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G008520.1

Sequence Viewer

Length: 1443 bp
ATGGCTCCTATTACTAACTTGCTTAAGGAGCTAAATATGAGCACTCTCTCCAATCTTTTCCTGTTTTCTGTTCTCTTGCTTACTGTTTTCATTTTCTTTTCAATTTTTAGATCAGGTGAGAAACTAAAATCGCCGCCATCCCCAACAAGGTTACCCATAATCGGAAACCTCCACCAGCTAGGTACATTCCCACACCGTTCTCTTCACACCCTCTCAAAGAAGTATGGCCCTCTAATGTTAATGCACTTGGGCCAATTGCCGACACTAGTAGTTTCATCGACAGACATGGCCAAGGAAATAAAGACGACTCACGACAGTGTTTGCTGTAGCCGTCCACAACTTATAGCTACAAATATATTACTTTATGGATGCAAAGACCTTGCGTTTTCTCCTTATGGAGAGTACTGGAGACAAGTTCGGAAACTCTGTGTTGTTGAACTTCTGAGCCTGAAAAGAGTGCAACAATTTCAGTATGCAAGGGAAGAAGAAGTTGCAGAATTGGTCAAGAAGATACGCAAAGATGACATGTTGATAAAAACGTCCAACAACATACTATCTAGTTGTGTTATTGGAAAAAGGTTTGTAGAGGAAAATAAGAATTGGTTTGGAGAGGCATCAAGAAGGTTGATGGTTCAACTCATGTCTTACAGTGTTGGAGATTTCTTCCCTAGTTTGAGATGGATTGACAATCTTAGAGGATTCATTGCACGTTTGAAAGCAACTTCTGCCGAATTAGATGGATTCTTTGATCAGTTGATTGAAGAACACAAGGCTATAAAGGGAGAATATGAACTCAAAACAAGAGATTTTGTGGATATACTCCTCAAATACAGAAAGGATGATGCGTTTAACTTGGATCTTACTCAAGATAACTTAAAAGCAATCCTACAGGATCAACAACAACCTTTGGAATGGTTAATGGCAGAGCTTGTCAGAAATACAAATGTGATGGAAAAGCAAAAAGTAGATGTGGATGATATCAATCAAATGGACTACTTAAAATGTGTCATCAAAGAAACTCTACGACTACATCCTCCAATTACTCTTGTACATCAGGAAACAACTGGAGCTGTAACATTGGGAGGTTACTATATCCCGGCGAAAACAAGAGTACTTGTCAATACATTTGCAATCCAAAGAGACCCCAAGTTCTGGGACAAGCCAGAGGAATTCCTTCCGGATCGATTTGAGGACAACTCAATTGATTTCAATGGTCAGGACTTCCAATTTTTCCCATTTGGTGGTGGGAGAAGAGGGTGTCCTGGACAGGCCTTTGCGCTGGCTGTAGTTGAATATATGGTTGCCAATCTTCTATTTTGGTTTGATTGGAAGTTGCCTAGTGGTAATGTATCGGTGGAGGCTGTAGATATGAGTGAAGTGTATGGACTCGTTGTCTATAAGAAAGCTCCTCTTTGTCTTGTCCCCATACCATTCTGCACTTGA

Protein Analysis

480

Amino Acids

55.11

Weight (kDa)

7.54

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 45 - 449 2.2e-70 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1152, 1241
AccIII TCCGGA 1 cut(s) 1177
AciI CCGC 1 cut(s) 134
AclWI GGATC 3 cut(s) 864, 900, 1188
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 1169
AfaI GTAC 4 cut(s) 184, 404, 1050, 1113
AfiI CCNNNNNNNGG 4 cut(s) 147, 161, 1152, 1241
AflII CTTAAG 1 cut(s) 23
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 7 cut(s) 102, 437, 635, 715, 761, 1210, 1292
AhdI GACNNNNNGTC 1 cut(s) 1391
AhlI ACTAGT 1 cut(s) 265
AjnI CCWGG 1 cut(s) 1261
AleI CACNNNNGTG 1 cut(s) 315
AluBI AGCT 6 cut(s) 31, 178, 347, 928, 1070, 1406
AluI AGCT 6 cut(s) 31, 178, 347, 928, 1070, 1406
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 2 cut(s) 403, 1134
AlwI GGATC 3 cut(s) 864, 900, 1188
Aor13HI TCCGGA 1 cut(s) 1177
AoxI GGCC 4 cut(s) 226, 250, 288, 1269
ApoI RAATTY 1 cut(s) 1169
Asp700I GAANNNNTTC 1 cut(s) 1173
AspLEI GCGC 1 cut(s) 1279
AspS9I GGNCC 2 cut(s) 227, 250
AsuC2I CCSGG 1 cut(s) 1097
AsuHPI GGTGA 1 cut(s) 128
BalI TGGCCA 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 44
BccI CCATC 5 cut(s) 145, 622, 672, 731, 943
BceAI ACGGC 1 cut(s) 315
BciT130I CCWGG 1 cut(s) 1263
BclI TGATCA 1 cut(s) 748
BcnI CCSGG 1 cut(s) 1097
BcoDI GTCTC 2 cut(s) 403, 1134
BcuI ACTAGT 1 cut(s) 265
BfaI CTAG 5 cut(s) 179, 266, 558, 669, 1338
BfmI CTRYAG 4 cut(s) 325, 887, 1284, 1362
BfrI CTTAAG 1 cut(s) 23
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
BmcAI AGTACT 2 cut(s) 404, 1113
Bme1390I CCNGG 2 cut(s) 1097, 1263
BmeRI GACNNNNNGTC 1 cut(s) 1391
BmgT120I GGNCC 2 cut(s) 227, 250
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 1097, 1263
BmsI GCATC 3 cut(s) 359, 623, 832
BplI GAGNNNNNCTC 2 cut(s) 1181, 1213
BpmI CTGGAG 2 cut(s) 427, 1086
BpuEI CTTGAG 1 cut(s) 849
BpuMI CCSGG 1 cut(s) 1097
Bsa29I ATCGAT 1 cut(s) 1183
BsaBI GATNNNNATC 1 cut(s) 981
BsaI GGTCTC 1 cut(s) 1134
BsaJI CCNNGG 1 cut(s) 291
BsaWI WCCGGW 1 cut(s) 1177
Bsc4I CCNNNNNNNGG 4 cut(s) 147, 161, 1152, 1241
Bse1I ACTGG 2 cut(s) 410, 1069
Bse3DI GCAATG 1 cut(s) 702
Bse8I GATNNNNATC 1 cut(s) 981
BseAI TCCGGA 1 cut(s) 1177
BseBI CCWGG 1 cut(s) 1263
BseCI ATCGAT 1 cut(s) 1183
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 5 cut(s) 137, 374, 844, 979, 1030
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 4 cut(s) 147, 161, 1152, 1241
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 2 cut(s) 410, 1069
BseRI GAGGAG 2 cut(s) 812, 1398
BsgI GTGCAG 1 cut(s) 1420
BshFI GGCC 4 cut(s) 228, 252, 290, 1271
BshVI ATCGAT 1 cut(s) 1183
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 2 cut(s) 1097, 1178
BslFI GGGAC 2 cut(s) 1169, 1406
BslI CCNNNNNNNGG 4 cut(s) 147, 161, 1152, 1241
BsmAI GTCTC 2 cut(s) 403, 1134
BsmFI GGGAC 2 cut(s) 1169, 1406
BsnI GGCC 4 cut(s) 228, 252, 290, 1271
Bso31I GGTCTC 1 cut(s) 1134
Bsp1286I GDGCHC 1 cut(s) 44
Bsp13I TCCGGA 1 cut(s) 1177
Bsp1407I TGTACA 1 cut(s) 1048
Bsp143I GATC 5 cut(s) 110, 748, 856, 892, 1180
BspACI CCGC 1 cut(s) 134
BspANI GGCC 4 cut(s) 228, 252, 290, 1271
BspCNI CTCAG 1 cut(s) 435
BspDI ATCGAT 1 cut(s) 1183
BspEI TCCGGA 1 cut(s) 1177
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 3 cut(s) 864, 900, 1188
BspTI CTTAAG 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 1134
BsrDI GCAATG 1 cut(s) 702
BsrGI TGTACA 1 cut(s) 1048
BsrI ACTGG 2 cut(s) 410, 1069
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 5 cut(s) 110, 748, 856, 892, 1180
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 1263
Bst4CI ACNGT 4 cut(s) 85, 197, 317, 650
Bst6I CTCTTC 2 cut(s) 207, 1246
BstAFI CTTAAG 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 725
BstAUI TGTACA 1 cut(s) 1048
BstC8I GCNNGC 1 cut(s) 1281
BstDEI CTNAG 2 cut(s) 443, 692
BstEII GGTNACC 1 cut(s) 150
BstF5I GGATG 5 cut(s) 137, 374, 844, 979, 1030
BstHHI GCGC 1 cut(s) 1279
BstKTI GATC 5 cut(s) 113, 751, 859, 895, 1183
BstMAI GTCTC 2 cut(s) 403, 1134
BstMBI GATC 5 cut(s) 110, 748, 856, 892, 1180
BstMWI GCNNNNNNNGC 2 cut(s) 28, 725
BstNI CCWGG 1 cut(s) 1263
BstNSI RCATGY 1 cut(s) 529
BstPI GGTNACC 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 1095, 1261
BstSFI CTRYAG 4 cut(s) 325, 887, 1284, 1362
BstX2I RGATCY 1 cut(s) 856
BstYI RGATCY 1 cut(s) 856
Bsu15I ATCGAT 1 cut(s) 1183
BsuRI GGCC 4 cut(s) 228, 252, 290, 1271
BsuTUI ATCGAT 1 cut(s) 1183
BtsCI GGATG 5 cut(s) 137, 374, 844, 979, 1030
BtsIMutI CAGTG 2 cut(s) 322, 655
Cac8I GCNNGC 1 cut(s) 1281
CfoI GCGC 1 cut(s) 1279
Cfr13I GGNCC 2 cut(s) 227, 250
ClaI ATCGAT 1 cut(s) 1183
Csp6I GTAC 4 cut(s) 183, 403, 1049, 1112
CviAII CATG 3 cut(s) 286, 526, 640
CviQI GTAC 4 cut(s) 183, 403, 1049, 1112
DdeI CTNAG 2 cut(s) 443, 692
DpnI GATC 5 cut(s) 112, 750, 858, 894, 1182
DpnII GATC 5 cut(s) 110, 748, 856, 892, 1180
DriI GACNNNNNGTC 1 cut(s) 1391
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 207, 1246
Eam1105I GACNNNNNGTC 1 cut(s) 1391
EarI CTCTTC 2 cut(s) 207, 1246
Eco130I CCWWGG 1 cut(s) 291
Eco147I AGGCCT 1 cut(s) 1271
Eco31I GGTCTC 1 cut(s) 1134
Eco32I GATATC 1 cut(s) 979
Eco91I GGTNACC 1 cut(s) 150
EcoO65I GGTNACC 1 cut(s) 150
EcoRI GAATTC 1 cut(s) 1169
EcoRII CCWGG 1 cut(s) 1261
EcoRV GATATC 1 cut(s) 979
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 3 cut(s) 289, 529, 643
FalI AAGNNNNNCTT 2 cut(s) 1395, 1427
FaqI GGGAC 2 cut(s) 1169, 1406
FatI CATG 3 cut(s) 285, 525, 639
FbaI TGATCA 1 cut(s) 748
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 5 cut(s) 124, 381, 851, 986, 1017
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 5 cut(s) 179, 266, 558, 669, 1338
GlaI GCGC 1 cut(s) 1278
GluI GCNGC 1 cut(s) 134
GsuI CTGGAG 2 cut(s) 427, 1086
HaeIII GGCC 4 cut(s) 228, 252, 290, 1271
HapII CCGG 2 cut(s) 1097, 1178
HhaI GCGC 1 cut(s) 1279
Hin1II CATG 3 cut(s) 289, 529, 643
Hin6I GCGC 1 cut(s) 1277
HinP1I GCGC 1 cut(s) 1277
HinfI GANTC 4 cut(s) 307, 699, 741, 1386
HpaII CCGG 2 cut(s) 1097, 1178
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 335
Hpy188I TCNGA 4 cut(s) 164, 420, 444, 935
Hpy188III TCNNGA 7 cut(s) 311, 505, 618, 866, 1055, 1178, 1217
Hpy8I GTNNAC 1 cut(s) 335
HpyAV CCTTC 2 cut(s) 615, 1184
HpyCH4III ACNGT 4 cut(s) 85, 197, 317, 650
HpyCH4IV ACGT 2 cut(s) 539, 709
HpyCH4V TGCA 8 cut(s) 244, 372, 460, 476, 494, 707, 1130, 1437
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 725
HpyF3I CTNAG 2 cut(s) 443, 692
HpySE526I ACGT 2 cut(s) 539, 709
Hsp92II CATG 3 cut(s) 289, 529, 643
HspAI GCGC 1 cut(s) 1277
Kpn2I TCCGGA 1 cut(s) 1177
Ksp22I TGATCA 1 cut(s) 748
Kzo9I GATC 5 cut(s) 110, 748, 856, 892, 1180
LmnI GCTCC 4 cut(s) 10, 28, 1067, 1411
LweI GCATC 3 cut(s) 359, 623, 832
MaeI CTAG 5 cut(s) 179, 266, 558, 669, 1338
MaeII ACGT 2 cut(s) 539, 709
MaeIII GTNAC 3 cut(s) 150, 1072, 1085
MalI GATC 5 cut(s) 112, 750, 858, 894, 1182
MboI GATC 5 cut(s) 110, 748, 856, 892, 1180
MboII GAAGA 8 cut(s) 194, 494, 497, 520, 655, 773, 1263, 1301
MfeI CAATTG 2 cut(s) 254, 1200
MflI RGATCY 1 cut(s) 856
MhlI GDGCHC 1 cut(s) 44
MlsI TGGCCA 1 cut(s) 290
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 2 cut(s) 301, 1380
MmeI TCCRAC 2 cut(s) 567, 634
Mox20I TGGCCA 1 cut(s) 290
MroI TCCGGA 1 cut(s) 1177
MroXI GAANNNNTTC 1 cut(s) 1173
MscI TGGCCA 1 cut(s) 290
MseI TTAA 6 cut(s) 24, 239, 849, 875, 917, 998
MslI CAYNNNNRTG 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 23
MspI CCGG 2 cut(s) 1097, 1178
MspR9I CCNGG 2 cut(s) 1097, 1263
MunI CAATTG 2 cut(s) 254, 1200
MvaI CCWGG 1 cut(s) 1263
MwoI GCNNNNNNNGC 2 cut(s) 28, 725
NciI CCSGG 1 cut(s) 1097
NdeII GATC 5 cut(s) 110, 748, 856, 892, 1180
NlaIII CATG 3 cut(s) 289, 529, 643
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 529
OliI CACNNNNGTG 1 cut(s) 315
PceI AGGCCT 1 cut(s) 1271
PciI ACATGT 1 cut(s) 525
PdmI GAANNNNTTC 1 cut(s) 1173
PfeI GAWTC 2 cut(s) 699, 741
PflMI CCANNNNNTGG 2 cut(s) 1152, 1241
PfoI TCCNGGA 1 cut(s) 1261
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 2 cut(s) 301, 1380
PpsI GAGTC 2 cut(s) 301, 1380
PscI ACATGT 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 1261
PspEI GGTNACC 1 cut(s) 150
PspGI CCWGG 1 cut(s) 1261
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 227, 250
PsuI RGATCY 1 cut(s) 856
RsaI GTAC 4 cut(s) 184, 404, 1050, 1113
RsaNI GTAC 4 cut(s) 183, 403, 1049, 1112
RseI CAYNNNNRTG 1 cut(s) 315
SaqAI TTAA 6 cut(s) 24, 239, 849, 875, 917, 998
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 5 cut(s) 110, 748, 856, 892, 1180
Sau96I GGNCC 2 cut(s) 227, 250
ScaI AGTACT 2 cut(s) 404, 1113
SchI GAGTC 2 cut(s) 301, 1380
ScrFI CCNGG 2 cut(s) 1097, 1263
SduI GDGCHC 1 cut(s) 44
SfaNI GCATC 3 cut(s) 359, 623, 832
SfcI CTRYAG 4 cut(s) 325, 887, 1284, 1362
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 2 cut(s) 23, 864
SmoI CTYRAG 2 cut(s) 23, 864
SpeI ACTAGT 1 cut(s) 265
SseBI AGGCCT 1 cut(s) 1271
SsiI CCGC 1 cut(s) 134
SspMI CTAG 5 cut(s) 179, 266, 558, 669, 1338
StuI AGGCCT 1 cut(s) 1271
StyD4I CCNGG 2 cut(s) 1095, 1261
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 4 cut(s) 85, 197, 317, 650
TaiI ACGT 2 cut(s) 542, 712
TaqI TCGA 2 cut(s) 278, 1183
TatI WGTACW 3 cut(s) 402, 1048, 1111
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 2 cut(s) 699, 741
Tru1I TTAA 6 cut(s) 24, 239, 849, 875, 917, 998
Tru9I TTAA 6 cut(s) 24, 239, 849, 875, 917, 998
TscAI CASTG 2 cut(s) 322, 655
TspDTI ATGAA 4 cut(s) 79, 264, 691, 804
TspRI CASTG 2 cut(s) 322, 655
Van91I CCANNNNNTGG 2 cut(s) 1152, 1241
Vha464I CTTAAG 1 cut(s) 23
XapI RAATTY 1 cut(s) 1169
XceI RCATGY 1 cut(s) 529
XmnI GAANNNNTTC 1 cut(s) 1173
XspI CTAG 5 cut(s) 179, 266, 558, 669, 1338
ZrmI AGTACT 2 cut(s) 404, 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.