Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001759

Physical Location & Seq

Genomic Coordinates Reverse (-)

1244821 .. 1246705

Gene Structure 1885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54470

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGGCTCTTGTTACTAACTTGCTTAAGGAGCTAAATATGAGCACTCTCTCCAATCTTTTCCTGCTTTTTGTTCTCTTGCTTACTATTTTCATGTTATTTTCAATTTTTAGATCAGGTGAGAAACTAAAATCACCGCCATCCCCAACAAGGTTACCCATAATCGGAAACCTCCACCAACTAGGTACACTGCCACACCGTTCTCTTCATACCCTCTCAAAGAAGTATGGCCCTCTAATGTTATTGCACTTGGGCCAATCTTTGACACTAGTAGTTTCATCGGCAGACATGGCCAAAGAAATAATGAAGACTCATGACAGTGTTTGTTGTAGCCGTCCCAATTTTACAGCTACAAATATATTACTCTATGGATGCAAAGACATAGGGTTTTCTCCTTATGGAGAGTACTGGAGAAAAGTTCGTAAACTCTGTGTTGTTGAACTTCTGACCCTAAAAAGAGTGCAAGAATTTCTGTATGTAAGGGAAGAAGAAATTTCAGAATTGGTCAAGACGATAAGCAAAGAGTGCCTCAGTGAGTCTCCTATTGATCTAAGTGCCATGCTGATGAAAACCTCCAACAACATACTTTCTAGGTGTGTTATTGGAAAAAGGTTTGTAGAGGAAAATGATAATTGGTTTGGAGAGGCATCAAGAAGGTTGACGGATCAAATAATGTCTTTTAGTGTCGGAGATTTCTTCCCTAGTTTGAGATGGATTGACAATCTTAGAGGATTCATTGCACGCTTGAAAGCAACTTCTGCCGAATTAGATGGATTCTTTGATCAGTTGATTGAAGAACGCAAGGCTACAAAGGGAGAATGTAAACTCAAAACAAGAGATTTTGTGGATATTCTTCTCAAATATGGAAAGGATGATGCACTTTACTTGAATCTCACTCAAGATAACTTAAAAGCAATCCTACAAGACATGTTTATTGCGGGAAGTGATTCAACATCATCAGCTTTGGAATGGTTAATGGCAGAGCTTGTCAGAAATCCAAATGTGATGGAAAAAGTCCAACAAGAGGTAAGAAGAGTGGTGGGACAAAAGGCAAAGGTAGATGTGGATGATATCAATCGAATGGACTTCTTGAAATGTGTCATCAAAGAAACTCTGAGGCTCCATCCTATAGCTCCTCTTTTACTTCCGCGAGAAACAATTGAAGGTGTTACACTGGGAGGTTACTATATCCCAGCAAAAACAAGAGTACTCATCAATGCATTTGCAATCCAAAGGGACCCCAAGTTCTGGGACAAGCCAGAAGAGTTCCTCCCGGATCGATTTGAGGAAAACTCGATTGACTTCAATGGTCAGGACTTCCAATTTATCCCGTTTGGTGGTGGGAGAAGACAATGTCCCGGACAGGCATTTGCAATGGCTACAATGGAATATGAGGTTGCCAATCTTTTGTATTGGTTTGATTGGAAATTGCCTAGTGATACTATATTGGCTGAGGCCGTAGACATGAGTGAAGTTTATGGACTTGCTGTCCATAAGAAAGCTCATCTTCGTCTTGTCCCCATACCATTCTCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00460 ko00590 ko00591 ko00830 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00460 map00590 map00591 map00830 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

511

Amino Acids

58.31

Weight (kDa)

7.07

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	45 - 479	2.3e-106	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g17450 FvH4_5g06440 FvH4_5g06460
malus_domestica	MD00G1167000.v1.1 MD06G1164400.v1.1 MD06G1164700.v1.1 MD14G1169200.v1.1 MD14G1169600.v1.1 MD14G1169700.v1.1
prunus_persica	Prupe.3G184200_v2.0.a1 Prupe.5G163700_v2.0.a1 Prupe.5G163800_v2.0.a1 Prupe.5G164000_v2.0.a1 Prupe.5G164100_v2.0.a1
pyrus_communis	pycom06g14730 pycom14g14150
rosa_chinensis	RchiOBHm_Chr1g0314001 RchiOBHm_Chr4g0420441 RchiOBHm_Chr5g0028981 RchiOBHm_Chr7g0192271 RchiOBHm_Chr7g0192301 RchiOBHm_Chr7g0233491
rosa_laevigata	RLG00000004378 RLG00000004380 RLG00000007763 RLG00000033133
rosa_multiflora	Rmu_sc0001559.1_g000001 Rmu_sc0009042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00050910 Rroxscaffold_3G00263130
rosa_rugosa	Rorug03G0295500 Rorug05G0112200 Rorug07G0000300 Rorug07G0000400
rosa_samantha	Rh4AG225500 Rh5AG204200 Rh5CG223300 Rh7AG124500 Rh7AG124700 Rh7BG126300 Rh7BG126500 Rh7DG128100 Rh7DG128300
rosa_wichuraiana	Rw0G008520 Rw4G011870 Rw5G018510 Rw7G010670 Rw7G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1245
AccI	GTMKAC	1 cut(s)	1458
AccII	CGCG	1 cut(s)	1147
AciI	CCGC	3 cut(s)	134, 935, 1145
AclWI	GGATC	2 cut(s)	669, 1281
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	464, 489
AfaI	GTAC	3 cut(s)	184, 404, 1206
AfiI	CCNNNNNNNGG	5 cut(s)	147, 161, 1021, 1245, 1334
AflII	CTTAAG	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	924
AgsI	TTSAA	9 cut(s)	102, 437, 745, 791, 886, 948, 1090, 1160, 1303
AhdI	GACNNNNNGTC	1 cut(s)	1484
AhlI	ACTAGT	1 cut(s)	265
AloI	GAACNNNNNNTCC	2 cut(s)	1226, 1258
AluBI	AGCT	6 cut(s)	31, 347, 959, 982, 1130, 1499
AluI	AGCT	6 cut(s)	31, 347, 959, 982, 1130, 1499
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	2 cut(s)	669, 1281
AoxI	GGCC	4 cut(s)	226, 250, 288, 1452
ApoI	RAATTY	2 cut(s)	464, 489
Asp700I	GAANNNNTTC	1 cut(s)	943
AspS9I	GGNCC	3 cut(s)	227, 250, 1234
AsuC2I	CCSGG	2 cut(s)	1271, 1356
AsuHPI	GGTGA	2 cut(s)	123, 128
AvaII	GGWCC	1 cut(s)	1234
BalI	TGGCCA	1 cut(s)	290
BbsI	GAAGAC	2 cut(s)	311, 1351
Bbv12I	GWGCWC	1 cut(s)	44
BbvCI	CCTCAGC	1 cut(s)	1449
BccI	CCATC	5 cut(s)	145, 702, 761, 997, 1128
BceAI	ACGGC	2 cut(s)	315, 1439
BclI	TGATCA	1 cut(s)	778
BcnI	CCSGG	2 cut(s)	1271, 1356
BcoDI	GTCTC	1 cut(s)	540
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	5 cut(s)	179, 266, 588, 699, 1431
BfmI	CTRYAG	1 cut(s)	1125
BfrI	CTTAAG	1 cut(s)	23
BmcAI	AGTACT	2 cut(s)	404, 1206
Bme1390I	CCNGG	2 cut(s)	1271, 1356
Bme18I	GGWCC	1 cut(s)	1234
BmeRI	GACNNNNNGTC	1 cut(s)	1484
BmgT120I	GGNCC	3 cut(s)	227, 250, 1234
BmiI	GGNNCC	3 cut(s)	1118, 1235, 1236
BmrFI	CCNGG	2 cut(s)	1271, 1356
BmrI	ACTGGG	1 cut(s)	1181
BmsI	GCATC	3 cut(s)	359, 653, 862
BmuI	ACTGGG	1 cut(s)	1181
BpiI	GAAGAC	2 cut(s)	311, 1351
BplI	GAGNNNNNCTC	2 cut(s)	1274, 1306
BpmI	CTGGAG	1 cut(s)	427
Bpu10I	CCTNAGC	1 cut(s)	1449
BpuEI	CTTGAG	1 cut(s)	879
BpuMI	CCSGG	2 cut(s)	1271, 1356
Bsa29I	ATCGAT	1 cut(s)	1276
BsaBI	GATNNNNATC	1 cut(s)	1071
Bsc4I	CCNNNNNNNGG	5 cut(s)	147, 161, 1021, 1245, 1334
Bse1I	ACTGG	2 cut(s)	410, 1176
Bse3DI	GCAATG	2 cut(s)	732, 1377
Bse8I	GATNNNNATC	1 cut(s)	1071
BseCI	ATCGAT	1 cut(s)	1276
BseGI	GGATG	5 cut(s)	137, 374, 874, 1069, 1120
BseJI	GATNNNNATC	1 cut(s)	1071
BseLI	CCNNNNNNNGG	5 cut(s)	147, 161, 1021, 1245, 1334
BseMI	GCAATG	2 cut(s)	732, 1377
BseMII	CTCAG	3 cut(s)	541, 1103, 1440
BseNI	ACTGG	2 cut(s)	410, 1176
BseRI	GAGGAG	2 cut(s)	1122, 1519
BseYI	CCCAGC	1 cut(s)	1189
Bsh1236I	CGCG	1 cut(s)	1147
BshFI	GGCC	4 cut(s)	228, 252, 290, 1454
BshVI	ATCGAT	1 cut(s)	1276
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	1271, 1356
BslFI	GGGAC	6 cut(s)	318, 1053, 1247, 1262, 1338, 1499
BslI	CCNNNNNNNGG	5 cut(s)	147, 161, 1021, 1245, 1334
BsmAI	GTCTC	1 cut(s)	540
BsmFI	GGGAC	6 cut(s)	318, 1053, 1247, 1262, 1338, 1499
BsnI	GGCC	4 cut(s)	228, 252, 290, 1454
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	5 cut(s)	110, 544, 661, 778, 1273
BspACI	CCGC	3 cut(s)	134, 935, 1145
BspANI	GGCC	4 cut(s)	228, 252, 290, 1454
BspCNI	CTCAG	3 cut(s)	540, 1104, 1441
BspDI	ATCGAT	1 cut(s)	1276
BspFNI	CGCG	1 cut(s)	1147
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	3 cut(s)	1118, 1235, 1236
BspPI	GGATC	2 cut(s)	669, 1281
BspTI	CTTAAG	1 cut(s)	23
BsrDI	GCAATG	2 cut(s)	732, 1377
BsrI	ACTGG	2 cut(s)	410, 1176
BssMI	GATC	5 cut(s)	110, 544, 661, 778, 1273
Bst4CI	ACNGT	2 cut(s)	197, 317
Bst6I	CTCTTC	3 cut(s)	207, 1024, 1254
BstAFI	CTTAAG	1 cut(s)	23
BstAPI	GCANNNNNTGC	2 cut(s)	522, 755
BstC8I	GCNNGC	1 cut(s)	739
BstDEI	CTNAG	5 cut(s)	527, 548, 722, 1112, 1449
BstEII	GGTNACC	1 cut(s)	150
BstF5I	GGATG	5 cut(s)	137, 374, 874, 1069, 1120
BstFNI	CGCG	1 cut(s)	1147
BstKTI	GATC	5 cut(s)	113, 547, 664, 781, 1276
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	5 cut(s)	110, 544, 661, 778, 1273
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 287, 522, 755
BstNSI	RCATGY	1 cut(s)	928
BstPI	GGTNACC	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	1269, 1354
BstSFI	CTRYAG	1 cut(s)	1125
BstUI	CGCG	1 cut(s)	1147
BstV2I	GAAGAC	2 cut(s)	311, 1351
Bsu15I	ATCGAT	1 cut(s)	1276
BsuRI	GGCC	4 cut(s)	228, 252, 290, 1454
BsuTUI	ATCGAT	1 cut(s)	1276
BtsCI	GGATG	5 cut(s)	137, 374, 874, 1069, 1120
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	4 cut(s)	185, 322, 535, 1169
Cac8I	GCNNGC	1 cut(s)	739
CciI	TCATGA	1 cut(s)	310
Cfr13I	GGNCC	3 cut(s)	227, 250, 1234
ClaI	ATCGAT	1 cut(s)	1276
Csp6I	GTAC	3 cut(s)	183, 403, 1205
CviAII	CATG	6 cut(s)	91, 286, 311, 556, 925, 1462
CviQI	GTAC	3 cut(s)	183, 403, 1205
DdeI	CTNAG	5 cut(s)	527, 548, 722, 1112, 1449
DpnI	GATC	5 cut(s)	112, 546, 663, 780, 1275
DpnII	GATC	5 cut(s)	110, 544, 661, 778, 1273
DriI	GACNNNNNGTC	1 cut(s)	1484
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	3 cut(s)	207, 1024, 1254
Eam1105I	GACNNNNNGTC	1 cut(s)	1484
EarI	CTCTTC	3 cut(s)	207, 1024, 1254
Eco32I	GATATC	1 cut(s)	1069
Eco47I	GGWCC	1 cut(s)	1234
Eco91I	GGTNACC	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	1234
EcoO65I	GGTNACC	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	1069
EcoT22I	ATGCAT	1 cut(s)	1219
FaeI	CATG	6 cut(s)	94, 289, 314, 559, 928, 1465
FalI	AAGNNNNNCTT	2 cut(s)	1488, 1520
FaqI	GGGAC	6 cut(s)	318, 1053, 1247, 1262, 1338, 1499
FatI	CATG	6 cut(s)	90, 285, 310, 555, 924, 1461
FauI	CCCGC	1 cut(s)	928
FbaI	TGATCA	1 cut(s)	778
FblI	GTMKAC	1 cut(s)	1458
FokI	GGATG	5 cut(s)	124, 381, 881, 1076, 1107
FspBI	CTAG	5 cut(s)	179, 266, 588, 699, 1431
GsaI	CCCAGC	1 cut(s)	1193
GsuI	CTGGAG	1 cut(s)	427
HaeIII	GGCC	4 cut(s)	228, 252, 290, 1454
HapII	CCGG	2 cut(s)	1271, 1356
Hin1II	CATG	6 cut(s)	94, 289, 314, 559, 928, 1465
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HinfI	GANTC	6 cut(s)	307, 533, 729, 771, 886, 944
HpaII	CCGG	2 cut(s)	1271, 1356
HphI	GGTGA	2 cut(s)	123, 128
Hpy166II	GTNNAC	5 cut(s)	185, 422, 657, 821, 1459
Hpy188I	TCNGA	6 cut(s)	164, 444, 496, 686, 989, 1113
Hpy188III	TCNNGA	7 cut(s)	311, 505, 648, 896, 1087, 1310, 1533
Hpy8I	GTNNAC	5 cut(s)	185, 422, 657, 821, 1459
HpyAV	CCTTC	2 cut(s)	645, 1154
HpyCH4III	ACNGT	2 cut(s)	197, 317
HpyCH4V	TGCA	8 cut(s)	244, 372, 460, 737, 875, 1217, 1223, 1370
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 287, 522, 755
HpyF3I	CTNAG	5 cut(s)	527, 548, 722, 1112, 1449
Hsp92II	CATG	6 cut(s)	94, 289, 314, 559, 928, 1465
KflI	GGGWCCC	1 cut(s)	1234
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	5 cut(s)	110, 544, 661, 778, 1273
LmnI	GCTCC	3 cut(s)	28, 1122, 1135
LweI	GCATC	3 cut(s)	359, 653, 862
MaeI	CTAG	5 cut(s)	179, 266, 588, 699, 1431
MaeIII	GTNAC	4 cut(s)	10, 150, 1165, 1178
MalI	GATC	5 cut(s)	112, 546, 663, 780, 1275
MboI	GATC	5 cut(s)	110, 544, 661, 778, 1273
MfeI	CAATTG	1 cut(s)	1155
MhlI	GDGCHC	1 cut(s)	44
MlsI	TGGCCA	1 cut(s)	290
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	2 cut(s)	301, 542
MmeI	TCCRAC	3 cut(s)	597, 664, 1039
Mox20I	TGGCCA	1 cut(s)	290
Mph1103I	ATGCAT	1 cut(s)	1219
MroXI	GAANNNNTTC	1 cut(s)	943
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	3 cut(s)	24, 905, 971
MslI	CAYNNNNRTG	2 cut(s)	315, 560
Msp20I	TGGCCA	1 cut(s)	290
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	2 cut(s)	1271, 1356
MspR9I	CCNGG	2 cut(s)	1271, 1356
MunI	CAATTG	1 cut(s)	1155
MvnI	CGCG	1 cut(s)	1147
MwoI	GCNNNNNNNGC	4 cut(s)	28, 287, 522, 755
NciI	CCSGG	2 cut(s)	1271, 1356
NdeII	GATC	5 cut(s)	110, 544, 661, 778, 1273
NlaIII	CATG	6 cut(s)	94, 289, 314, 559, 928, 1465
NlaIV	GGNNCC	3 cut(s)	1118, 1235, 1236
NsiI	ATGCAT	1 cut(s)	1219
NspI	RCATGY	1 cut(s)	928
PagI	TCATGA	1 cut(s)	310
PciI	ACATGT	1 cut(s)	924
PdmI	GAANNNNTTC	1 cut(s)	943
PfeI	GAWTC	4 cut(s)	729, 771, 886, 944
PflFI	GACNNNGTC	1 cut(s)	1350
PflMI	CCANNNNNTGG	1 cut(s)	1245
PfoI	TCCNGGA	2 cut(s)	1269, 1354
PleI	GAGTC	2 cut(s)	301, 541
PpsI	GAGTC	2 cut(s)	301, 541
PpuMI	RGGWCCY	1 cut(s)	1234
PscI	ACATGT	1 cut(s)	924
Psp5II	RGGWCCY	1 cut(s)	1234
PspEI	GGTNACC	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	1189
PspN4I	GGNNCC	3 cut(s)	1118, 1235, 1236
PspPI	GGNCC	3 cut(s)	227, 250, 1234
PspPPI	RGGWCCY	1 cut(s)	1234
PsyI	GACNNNGTC	1 cut(s)	1350
RsaI	GTAC	3 cut(s)	184, 404, 1206
RsaNI	GTAC	3 cut(s)	183, 403, 1205
RseI	CAYNNNNRTG	2 cut(s)	315, 560
SaqAI	TTAA	3 cut(s)	24, 905, 971
Sau3AI	GATC	5 cut(s)	110, 544, 661, 778, 1273
Sau96I	GGNCC	3 cut(s)	227, 250, 1234
ScaI	AGTACT	2 cut(s)	404, 1206
SchI	GAGTC	2 cut(s)	301, 542
ScrFI	CCNGG	2 cut(s)	1271, 1356
SduI	GDGCHC	1 cut(s)	44
SfaNI	GCATC	3 cut(s)	359, 653, 862
SfcI	CTRYAG	1 cut(s)	1125
SinI	GGWCC	1 cut(s)	1234
SmiMI	CAYNNNNRTG	2 cut(s)	315, 560
SmlI	CTYRAG	2 cut(s)	23, 894
SmoI	CTYRAG	2 cut(s)	23, 894
SpeI	ACTAGT	1 cut(s)	265
SsiI	CCGC	3 cut(s)	134, 935, 1145
SspMI	CTAG	5 cut(s)	179, 266, 588, 699, 1431
StyD4I	CCNGG	2 cut(s)	1269, 1354
TaaI	ACNGT	2 cut(s)	197, 317
TaqI	TCGA	3 cut(s)	1075, 1276, 1292
TatI	WGTACW	2 cut(s)	402, 1204
TfiI	GAWTC	4 cut(s)	729, 771, 886, 944
Tru1I	TTAA	3 cut(s)	24, 905, 971
Tru9I	TTAA	3 cut(s)	24, 905, 971
TscAI	CASTG	4 cut(s)	192, 322, 535, 1176
TspDTI	ATGAA	6 cut(s)	79, 194, 264, 317, 578, 721
TspGWI	ACGGA	1 cut(s)	674
TspRI	CASTG	4 cut(s)	192, 322, 535, 1176
Tth111I	GACNNNGTC	1 cut(s)	1350
Van91I	CCANNNNNTGG	1 cut(s)	1245
Vha464I	CTTAAG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	1234
XapI	RAATTY	2 cut(s)	464, 489
XceI	RCATGY	1 cut(s)	928
XmiI	GTMKAC	1 cut(s)	1458
XmnI	GAANNNNTTC	1 cut(s)	943
XspI	CTAG	5 cut(s)	179, 266, 588, 699, 1431
ZrmI	AGTACT	2 cut(s)	404, 1206
Zsp2I	ATGCAT	1 cut(s)	1219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.