Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001759

Physical Location & Seq

Genomic Coordinates Reverse (-)

22752631 .. 22754030

Gene Structure 1400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG223300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCCAAGGAAGTCATGAAGACCCATGATACTGTTTTCTCCAGCCGTCCCAAAACTACAGCTGCAAACATATTAGTCTATGGATGCCACGACATCGGCTTTGCTCCTTATGGGGAGTACTGGAGACAAGTTCGGAAACTTTGTGTTCTTGAACTTCTCAGCCTCAAAAGGGTGCAACAATTTCAGTATGCAAGAGAAGAAGAAATTGGGGAGTTGGTAAACAAGATAGGAAAAGCGTGCCTCGGCCAGTCTCCTATTAATCTAAGTGAGATGCTGATAAAAGCCTCCAACAACATAATGTCTAGGTGCGTTCTTGGACAGAATTTTATAGAAGAAAATGGAAATTGGTTTGGAGAGTTGTCAAGAACGTTGATGGCTCAACTAATGGTTTTCAGCTTCGGAGATTTCTTCCCTTCTTTGAGATGGATTGACAATCTTAGAGGACTAACTGCGCGGTTGAATAAAACCTTTGTCGAAGTAGATGGATTCCTTGATCAGTTAATTGAAAAGCATAAGACAGCAAATGGAGAAGTTGATTCCAAGGACTTTGTGGATATTCTCCTCCAGCTTCAAAAGGATAGCATCCTTGACTTCGAGCTTACTCGAGACAACCTGAAAGCCATCCTAGTGGACATGCTCATTGGGGGAAGTGATACTAGTTCAACCGCGTTGGAATGGTTAATGGCAGAGCTGGTGAGAAATCCAAATGTAATGGCCAAAGTCCAAGAAGAAGTTAGACGGGTGGTGGGAAAAAAGGCAAGGGTGGATGTGAGTGATATCGAACAAATGGACTACCTAAAATGTGTCATCAAAGAAGCTCTAAGACTACATCCTCCAGCTCCTCTTTTAATTCCTAGAGAAACAATTGCAGGTGTGGAATTGGGAGGTTACTATATCCCTGCGAAAACAAGAGTGTTTGTGAATGCATTTGCAATCCAAAGGGACCCTGAATTCTGGGACAGACCAGAGGAGTTCCTTCCGGAACGATTTGAGGGCAACTCAGTTGATTTCAGAGGTCAGGACTTCCAGTTCATCGCATTTGGTGGTGGGAGAAGGGGGTGTCCTGGAGTGACCTTTGCGGTTGCTGCAGCTGAATACGAGCTTGCAAACCTTCTTTATTGGTTTGATTGGAAATTGCCTAGTAGTGGTAGTGCATTGGCCGAGACCTTGGACATGACTGAAGTTTACGGTCTCACTGTCCATAAAAAAGCTCCTCTTCATGTCGTGCCATTATTGTACTCCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00460 ko00590 ko00591 ko00830 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00460 map00590 map00591 map00830 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

415

Amino Acids

46.97

Weight (kDa)

5.49

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 383	2.2e-86	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g17450 FvH4_5g06440 FvH4_5g06460
malus_domestica	MD00G1167000.v1.1 MD06G1164400.v1.1 MD06G1164700.v1.1 MD14G1169200.v1.1 MD14G1169600.v1.1 MD14G1169700.v1.1
prunus_persica	Prupe.3G184200_v2.0.a1 Prupe.5G163700_v2.0.a1 Prupe.5G163800_v2.0.a1 Prupe.5G164000_v2.0.a1 Prupe.5G164100_v2.0.a1
pyrus_communis	pycom06g14730 pycom14g14150
rosa_chinensis	RchiOBHm_Chr1g0314001 RchiOBHm_Chr4g0420441 RchiOBHm_Chr5g0028981 RchiOBHm_Chr7g0192271 RchiOBHm_Chr7g0192301 RchiOBHm_Chr7g0233491
rosa_laevigata	RLG00000004378 RLG00000004380 RLG00000007763 RLG00000033133
rosa_multiflora	Rmu_sc0001559.1_g000001 Rmu_sc0009042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00050910 Rroxscaffold_3G00263130
rosa_rugosa	Rorug03G0295500 Rorug05G0112200 Rorug07G0000300 Rorug07G0000400
rosa_samantha	Rh4AG225500 Rh5AG204200 Rh5CG223300 Rh7AG124500 Rh7AG124700 Rh7BG126300 Rh7BG126500 Rh7DG128100 Rh7DG128300
rosa_wichuraiana	Rw0G008520 Rw4G011870 Rw5G018510 Rw7G010670 Rw7G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	860
Acc36I	ACCTGC	1 cut(s)	860
AccII	CGCG	2 cut(s)	454, 668
AccIII	TCCGGA	1 cut(s)	979
AciI	CCGC	3 cut(s)	454, 666, 1079
AclI	AACGTT	1 cut(s)	368
AcoI	YGGCCR	4 cut(s)	3, 244, 714, 1158
AcsI	RAATTY	2 cut(s)	322, 950
AcuI	CTGAAG	1 cut(s)	1200
AfaI	GTAC	2 cut(s)	119, 1238
AfiI	CCNNNNNNNGG	2 cut(s)	169, 1145
AgsI	TTSAA	5 cut(s)	152, 460, 506, 572, 663
AhlI	ACTAGT	1 cut(s)	656
AjnI	CCWGG	1 cut(s)	1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AloI	GAACNNNNNNTCC	2 cut(s)	1013, 1045
Alw26I	GTCTC	5 cut(s)	118, 255, 600, 1157, 1196
Ama87I	CYCGRG	1 cut(s)	603
Aor13HI	TCCGGA	1 cut(s)	979
AoxI	GGCC	4 cut(s)	3, 244, 714, 1158
ApeKI	GCWGC	3 cut(s)	62, 1085, 1088
ApoI	RAATTY	2 cut(s)	322, 950
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AseI	ATTAAT	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	1 cut(s)	943
AsuHPI	GGTGA	1 cut(s)	706
AvaI	CYCGRG	1 cut(s)	603
AvaII	GGWCC	1 cut(s)	943
BalI	TGGCCA	2 cut(s)	5, 716
BbsI	GAAGAC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	49, 1072, 1100
BccI	CCATC	4 cut(s)	367, 417, 476, 629
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	1065
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	5 cut(s)	118, 255, 600, 1157, 1196
BcuI	ACTAGT	1 cut(s)	656
BfaI	CTAG	5 cut(s)	303, 626, 657, 855, 1140
BfmI	CTRYAG	2 cut(s)	57, 1086
BfuAI	ACCTGC	1 cut(s)	860
BisI	GCNGC	3 cut(s)	63, 1086, 1089
BlsI	GCNGC	3 cut(s)	64, 1087, 1090
BmcAI	AGTACT	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	1065
Bme18I	GGWCC	1 cut(s)	943
BmeT110I	CYCGRG	1 cut(s)	603
BmgT120I	GGNCC	1 cut(s)	943
BmiI	GGNNCC	2 cut(s)	944, 945
BmrFI	CCNGG	1 cut(s)	1065
BmsI	GCATC	3 cut(s)	74, 261, 591
BpiI	GAAGAC	1 cut(s)	26
BplI	GAGNNNNNCTC	2 cut(s)	983, 1015
BpmI	CTGGAG	5 cut(s)	25, 142, 548, 819, 1086
BsaI	GGTCTC	2 cut(s)	1157, 1196
BsaJI	CCNNGG	4 cut(s)	6, 241, 540, 1167
BsaWI	WCCGGW	1 cut(s)	979
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 1145
Bse1I	ACTGG	3 cut(s)	125, 247, 1027
BseAI	TCCGGA	1 cut(s)	979
BseBI	CCWGG	1 cut(s)	1065
BseDI	CCNNGG	4 cut(s)	6, 241, 540, 1167
BseGI	GGATG	5 cut(s)	89, 582, 621, 772, 829
BseLI	CCNNNNNNNGG	2 cut(s)	169, 1145
BseMII	CTCAG	2 cut(s)	172, 1014
BseNI	ACTGG	3 cut(s)	125, 247, 1027
BseRI	GAGGAG	4 cut(s)	551, 831, 983, 1203
BseXI	GCAGC	3 cut(s)	49, 1072, 1100
Bsh1236I	CGCG	2 cut(s)	454, 668
BshFI	GGCC	4 cut(s)	5, 246, 716, 1160
BsiHKCI	CYCGRG	1 cut(s)	603
BsiSI	CCGG	1 cut(s)	980
BslFI	GGGAC	3 cut(s)	33, 956, 971
BslI	CCNNNNNNNGG	2 cut(s)	169, 1145
BsmAI	GTCTC	5 cut(s)	118, 255, 600, 1157, 1196
BsmFI	GGGAC	3 cut(s)	33, 956, 971
BsmI	GAATGC	1 cut(s)	928
BsnI	GGCC	4 cut(s)	5, 246, 716, 1160
Bso31I	GGTCTC	2 cut(s)	1157, 1196
BsoBI	CYCGRG	1 cut(s)	603
Bsp13I	TCCGGA	1 cut(s)	979
Bsp143I	GATC	1 cut(s)	493
BspACI	CCGC	3 cut(s)	454, 666, 1079
BspANI	GGCC	4 cut(s)	5, 246, 716, 1160
BspCNI	CTCAG	2 cut(s)	171, 1013
BspEI	TCCGGA	1 cut(s)	979
BspFNI	CGCG	2 cut(s)	454, 668
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	944, 945
BspMAI	CTGCAG	1 cut(s)	1090
BspMI	ACCTGC	1 cut(s)	860
BspTNI	GGTCTC	2 cut(s)	1157, 1196
BsrI	ACTGG	3 cut(s)	125, 247, 1027
BssECI	CCNNGG	4 cut(s)	6, 241, 540, 1167
BssMI	GATC	1 cut(s)	493
BssT1I	CCWWGG	3 cut(s)	6, 540, 1167
Bst2UI	CCWGG	1 cut(s)	1065
Bst4CI	ACNGT	3 cut(s)	34, 1190, 1198
Bst6I	CTCTTC	1 cut(s)	1221
BstC8I	GCNNGC	2 cut(s)	238, 1104
BstDEI	CTNAG	5 cut(s)	158, 263, 437, 821, 1000
BstF5I	GGATG	5 cut(s)	89, 582, 621, 772, 829
BstFNI	CGCG	2 cut(s)	454, 668
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	1 cut(s)	496
BstMAI	GTCTC	5 cut(s)	118, 255, 600, 1157, 1196
BstMBI	GATC	1 cut(s)	493
BstMWI	GCNNNNNNNGC	1 cut(s)	1085
BstNI	CCWGG	1 cut(s)	1065
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	1 cut(s)	1063
BstSFI	CTRYAG	2 cut(s)	57, 1086
BstUI	CGCG	2 cut(s)	454, 668
BstV1I	GCAGC	3 cut(s)	49, 1072, 1100
BstV2I	GAAGAC	1 cut(s)	26
BstXI	CCANNNNNNTGG	1 cut(s)	628
BsuRI	GGCC	4 cut(s)	5, 246, 716, 1160
BtgZI	GCGATG	1 cut(s)	1018
BtsCI	GGATG	5 cut(s)	89, 582, 621, 772, 829
BtsIMutI	CAGTG	1 cut(s)	1194
BveI	ACCTGC	1 cut(s)	860
Cac8I	GCNNGC	2 cut(s)	238, 1104
CciI	TCATGA	1 cut(s)	15
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	943
Csp6I	GTAC	2 cut(s)	118, 1237
CviAII	CATG	5 cut(s)	16, 26, 634, 1174, 1220
CviQI	GTAC	2 cut(s)	118, 1237
DdeI	CTNAG	5 cut(s)	158, 263, 437, 821, 1000
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
EaeI	YGGCCR	4 cut(s)	3, 244, 714, 1158
Eam1104I	CTCTTC	1 cut(s)	1221
EarI	CTCTTC	1 cut(s)	1221
Eco130I	CCWWGG	3 cut(s)	6, 540, 1167
Eco31I	GGTCTC	2 cut(s)	1157, 1196
Eco32I	GATATC	1 cut(s)	778
Eco47I	GGWCC	1 cut(s)	943
Eco57I	CTGAAG	1 cut(s)	1200
Eco88I	CYCGRG	1 cut(s)	603
EcoO109I	RGGNCCY	1 cut(s)	943
EcoRI	GAATTC	1 cut(s)	950
EcoRII	CCWGG	1 cut(s)	1063
EcoRV	GATATC	1 cut(s)	778
EcoT14I	CCWWGG	3 cut(s)	6, 540, 1167
EcoT22I	ATGCAT	1 cut(s)	928
ErhI	CCWWGG	3 cut(s)	6, 540, 1167
FaeI	CATG	5 cut(s)	19, 29, 637, 1177, 1223
FalI	AAGNNNNNCTT	2 cut(s)	1200, 1232
FaqI	GGGAC	3 cut(s)	33, 956, 971
FatI	CATG	5 cut(s)	15, 25, 633, 1173, 1219
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	3 cut(s)	63, 1086, 1089
FokI	GGATG	5 cut(s)	96, 569, 608, 779, 816
Fsp4HI	GCNGC	3 cut(s)	63, 1086, 1089
FspBI	CTAG	5 cut(s)	303, 626, 657, 855, 1140
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	3 cut(s)	63, 1086, 1089
GsuI	CTGGAG	5 cut(s)	25, 142, 548, 819, 1086
HaeIII	GGCC	4 cut(s)	5, 246, 716, 1160
HapII	CCGG	1 cut(s)	980
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	5 cut(s)	19, 29, 637, 1177, 1223
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HinfI	GANTC	2 cut(s)	486, 536
HpaII	CCGG	1 cut(s)	980
HphI	GGTGA	1 cut(s)	706
Hpy166II	GTNNAC	3 cut(s)	220, 631, 1186
Hpy188I	TCNGA	3 cut(s)	135, 401, 1013
Hpy188III	TCNNGA	6 cut(s)	16, 149, 363, 605, 980, 1019
Hpy8I	GTNNAC	3 cut(s)	220, 631, 1186
HpyAV	CCTTC	4 cut(s)	423, 986, 1047, 1121
HpyCH4III	ACNGT	3 cut(s)	34, 1190, 1198
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	9 cut(s)	65, 175, 191, 869, 926, 932, 1088, 1106, 1154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1085
HpyF3I	CTNAG	5 cut(s)	158, 263, 437, 821, 1000
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	5 cut(s)	19, 29, 637, 1177, 1223
HspAI	GCGC	1 cut(s)	452
KflI	GGGWCCC	1 cut(s)	943
Kpn2I	TCCGGA	1 cut(s)	979
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	1 cut(s)	493
LmnI	GCTCC	3 cut(s)	109, 844, 1216
Lsp1109I	GCAGC	3 cut(s)	49, 1072, 1100
LweI	GCATC	3 cut(s)	74, 261, 591
MaeI	CTAG	5 cut(s)	303, 626, 657, 855, 1140
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	2 cut(s)	887, 1069
MalI	GATC	1 cut(s)	495
MboI	GATC	1 cut(s)	493
MboII	GAAGA	7 cut(s)	31, 209, 212, 344, 400, 740, 1208
MfeI	CAATTG	1 cut(s)	864
MlsI	TGGCCA	2 cut(s)	5, 716
MluNI	TGGCCA	2 cut(s)	5, 716
MmeI	TCCRAC	2 cut(s)	312, 651
Mox20I	TGGCCA	2 cut(s)	5, 716
Mph1103I	ATGCAT	1 cut(s)	928
MroI	TCCGGA	1 cut(s)	979
MscI	TGGCCA	2 cut(s)	5, 716
MseI	TTAA	4 cut(s)	258, 500, 680, 848
MslI	CAYNNNNRTG	1 cut(s)	626
Msp20I	TGGCCA	2 cut(s)	5, 716
MspA1I	CMGCKG	2 cut(s)	62, 1091
MspI	CCGG	1 cut(s)	980
MspR9I	CCNGG	1 cut(s)	1065
MunI	CAATTG	1 cut(s)	864
Mva1269I	GAATGC	1 cut(s)	928
MvaI	CCWGG	1 cut(s)	1065
MvnI	CGCG	2 cut(s)	454, 668
MwoI	GCNNNNNNNGC	1 cut(s)	1085
NdeII	GATC	1 cut(s)	493
NlaIII	CATG	5 cut(s)	19, 29, 637, 1177, 1223
NlaIV	GGNNCC	2 cut(s)	944, 945
NmeAIII	GCCGAG	2 cut(s)	222, 1186
NmuCI	GTSAC	1 cut(s)	1069
NsiI	ATGCAT	1 cut(s)	928
NspI	RCATGY	1 cut(s)	637
PaeR7I	CTCGAG	1 cut(s)	603
PagI	TCATGA	1 cut(s)	15
PaqCI	CACCTGC	1 cut(s)	860
PctI	GAATGC	1 cut(s)	928
PfeI	GAWTC	2 cut(s)	486, 536
PfoI	TCCNGGA	1 cut(s)	1063
PkrI	GCNGC	3 cut(s)	64, 1087, 1090
PpuMI	RGGWCCY	1 cut(s)	943
PshBI	ATTAAT	1 cut(s)	258
Psp1406I	AACGTT	1 cut(s)	368
Psp5II	RGGWCCY	1 cut(s)	943
Psp6I	CCWGG	1 cut(s)	1063
PspGI	CCWGG	1 cut(s)	1063
PspN4I	GGNNCC	2 cut(s)	944, 945
PspPI	GGNCC	1 cut(s)	943
PspPPI	RGGWCCY	1 cut(s)	943
PstI	CTGCAG	1 cut(s)	1090
PvuII	CAGCTG	2 cut(s)	62, 1091
RsaI	GTAC	2 cut(s)	119, 1238
RsaNI	GTAC	2 cut(s)	118, 1237
RseI	CAYNNNNRTG	1 cut(s)	626
SaqAI	TTAA	4 cut(s)	258, 500, 680, 848
SatI	GCNGC	3 cut(s)	63, 1086, 1089
Sau3AI	GATC	1 cut(s)	493
Sau96I	GGNCC	1 cut(s)	943
ScaI	AGTACT	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	1065
SfaNI	GCATC	3 cut(s)	74, 261, 591
SfcI	CTRYAG	2 cut(s)	57, 1086
Sfr274I	CTCGAG	1 cut(s)	603
SinI	GGWCC	1 cut(s)	943
SlaI	CTCGAG	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	626
SmlI	CTYRAG	1 cut(s)	603
SmoI	CTYRAG	1 cut(s)	603
SpeI	ACTAGT	1 cut(s)	656
SsiI	CCGC	3 cut(s)	454, 666, 1079
SspMI	CTAG	5 cut(s)	303, 626, 657, 855, 1140
StyD4I	CCNGG	1 cut(s)	1063
StyI	CCWWGG	3 cut(s)	6, 540, 1167
TaaI	ACNGT	3 cut(s)	34, 1190, 1198
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	4 cut(s)	474, 594, 604, 780
TatI	WGTACW	2 cut(s)	117, 1236
TfiI	GAWTC	2 cut(s)	486, 536
Tru1I	TTAA	4 cut(s)	258, 500, 680, 848
Tru9I	TTAA	4 cut(s)	258, 500, 680, 848
TscAI	CASTG	1 cut(s)	1201
TseFI	GTSAC	1 cut(s)	1069
TseI	GCWGC	3 cut(s)	62, 1085, 1088
Tsp45I	GTSAC	1 cut(s)	1069
TspDTI	ATGAA	3 cut(s)	32, 1021, 1208
TspRI	CASTG	1 cut(s)	1201
VpaK11BI	GGWCC	1 cut(s)	943
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	2 cut(s)	322, 950
XceI	RCATGY	1 cut(s)	637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XhoI	CTCGAG	1 cut(s)	603
XspI	CTAG	5 cut(s)	303, 626, 657, 855, 1140
ZrmI	AGTACT	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.